Wall clock time and date at job start Wed Apr 1 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.37481 * 2 1 4 4 C 1.54007 * 110.32685 * 237.80904 * 2 1 3 5 5 N 1.47491 * 107.08419 * 242.41785 * 4 2 1 6 6 C 1.34774 * 127.03392 * 154.51396 * 5 4 2 7 7 O 1.21280 * 119.99923 * 354.96120 * 6 5 4 8 8 C 1.50698 * 119.99839 * 175.22592 * 6 5 4 9 9 H 1.09004 * 109.50832 * 28.16022 * 8 6 5 10 10 C 1.53147 * 109.50922 * 148.29434 * 8 6 5 11 11 C 1.53244 * 109.51132 * 189.40221 * 10 8 6 12 12 N 1.46476 * 108.80018 * 309.64471 * 11 10 8 13 13 C 1.36313 * 127.77721 * 197.15836 * 12 11 10 14 14 C 1.34861 * 106.68742 * 179.90786 * 13 12 11 15 15 N 1.34296 * 108.07081 * 0.02562 * 14 13 12 16 16 C 1.30094 * 109.21266 * 0.02562 * 15 14 13 17 17 C 1.51037 * 127.39061 * 179.97438 * 16 15 14 18 18 C 1.48118 * 105.92950 * 334.77808 * 5 4 2 19 19 C 1.54599 * 103.42402 * 39.02534 * 18 5 4 20 20 H 1.09001 * 110.57326 * 81.17285 * 19 18 5 21 21 C 1.52996 * 110.83254 * 204.44639 * 19 18 5 22 22 C 1.53005 * 109.47258 * 288.56470 * 21 19 18 23 23 N 1.46502 * 109.47268 * 179.97438 * 22 21 19 24 24 C 1.36934 * 119.99801 * 179.97438 * 23 22 21 25 25 H 1.07998 * 120.00181 * 0.02562 * 24 23 22 26 26 C 1.38817 * 119.99603 * 180.02562 * 24 23 22 27 27 N 1.31612 * 120.00254 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99592 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47081 * 90.00060 * 28 26 24 30 30 H 1.48497 * 109.46803 * 209.99988 * 28 26 24 31 31 H 1.48497 * 109.47417 * 329.99894 * 28 26 24 32 32 H 1.08996 * 109.47477 * 180.73948 * 1 2 3 33 33 H 1.08998 * 109.47073 * 300.73862 * 1 2 3 34 34 H 1.09000 * 109.47082 * 60.73788 * 1 2 3 35 35 H 1.08992 * 109.91605 * 123.05247 * 4 2 1 36 36 H 1.09008 * 109.90944 * 1.77287 * 4 2 1 37 37 H 1.09004 * 109.47139 * 309.42320 * 10 8 6 38 38 H 1.09006 * 109.46487 * 69.39913 * 10 8 6 39 39 H 1.09001 * 109.60880 * 189.83769 * 11 10 8 40 40 H 1.09000 * 109.56021 * 69.42392 * 11 10 8 41 41 H 1.07991 * 126.65674 * 359.87100 * 13 12 11 42 42 H 1.07993 * 125.96562 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.71748 * 76.30315 * 17 16 15 44 44 H 1.09005 * 109.74944 * 315.68729 * 17 16 15 45 45 H 1.08997 * 110.65907 * 157.50931 * 18 5 4 46 46 H 1.09000 * 110.66090 * 280.62771 * 18 5 4 47 47 H 1.09005 * 109.47353 * 48.56205 * 21 19 18 48 48 H 1.08997 * 109.47216 * 168.56424 * 21 19 18 49 49 H 1.09005 * 109.46721 * 300.00121 * 22 21 19 50 50 H 1.08997 * 109.47045 * 59.99849 * 22 21 19 51 51 H 0.97003 * 119.99745 * 0.02562 * 23 22 21 52 52 H 0.97001 * 119.99945 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0217 0.0000 4 6 2.0650 -0.7694 -1.2222 5 7 2.8276 -1.9225 -0.7084 6 6 3.0612 -3.0887 -1.3423 7 8 2.5480 -3.3068 -2.4194 8 6 3.9552 -4.1241 -0.7101 9 1 3.9159 -4.0254 0.3747 10 6 3.4826 -5.5235 -1.1146 11 6 4.2359 -6.5754 -0.2934 12 7 5.6718 -6.2972 -0.3733 13 6 6.7030 -7.1370 -0.0743 14 6 7.8407 -6.4489 -0.3001 15 7 7.5067 -5.2198 -0.7258 16 6 6.2104 -5.1202 -0.7717 17 6 5.3971 -3.9188 -1.1916 18 6 3.2788 -1.5392 0.6493 19 6 2.0670 -0.7724 1.2270 20 1 1.3174 -1.4684 1.6035 21 6 2.5094 0.1961 2.3257 22 6 2.9176 -0.5958 3.5696 23 7 3.3419 0.3316 4.6215 24 6 3.7538 -0.1514 5.8348 25 1 3.7663 -1.2160 6.0162 26 6 4.1553 0.7273 6.8316 27 7 4.1396 2.0247 6.6107 28 14 4.7179 0.0684 8.4865 29 1 6.1831 -0.1708 8.4519 30 1 4.4030 1.0593 9.5467 31 1 4.0148 -1.2071 8.7764 32 1 -0.3634 -1.0275 0.0133 33 1 -0.3633 0.5253 0.8833 34 1 -0.3633 0.5023 -0.8965 35 1 2.7180 -0.1245 -1.8101 36 1 1.2333 -1.1176 -1.8348 37 1 2.4127 -5.6141 -0.9270 38 1 3.6799 -5.6812 -2.1750 39 1 4.0332 -7.5679 -0.6960 40 1 3.9119 -6.5275 0.7462 41 1 6.6243 -8.1554 0.2761 42 1 8.8451 -6.8210 -0.1619 43 1 5.4123 -3.8257 -2.2775 44 1 5.8112 -3.0174 -0.7396 45 1 3.4933 -2.4247 1.2475 46 1 4.1522 -0.8893 0.5952 47 1 3.3584 0.7821 1.9733 48 1 1.6851 0.8642 2.5747 49 1 2.0687 -1.1817 3.9220 50 1 3.7420 -1.2639 3.3207 51 1 3.3303 1.2878 4.4586 52 1 4.4205 2.6387 7.3071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104366992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:05 Heat of formation + Delta-G solvation = 6.441812 kcal Electronic energy + Delta-G solvation = -30762.061843 eV Core-core repulsion = 26761.213063 eV Total energy + Delta-G solvation = -4000.848780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.30560 -41.40249 -39.43644 -37.21730 -36.78292 -34.66611 -34.27460 -33.46023 -31.76703 -30.87081 -29.83486 -28.46940 -27.60223 -25.93765 -25.52149 -24.20638 -23.57883 -22.40008 -21.98555 -20.91330 -20.38750 -19.91598 -19.13171 -18.26083 -17.98446 -17.20263 -16.97175 -16.63849 -16.36873 -15.88764 -15.65891 -15.32210 -15.24168 -15.10264 -14.89108 -14.79042 -14.69448 -14.46685 -14.36953 -14.18272 -13.73232 -13.46665 -13.22306 -13.11697 -12.99819 -12.88575 -12.84131 -12.68371 -12.40261 -12.31014 -12.25020 -12.20150 -12.10927 -11.86735 -11.56659 -11.49474 -11.25089 -10.99807 -10.91619 -10.87091 -10.55630 -9.76693 -9.31189 -8.96942 -7.93870 -5.21978 1.08492 1.42483 1.48489 1.49917 1.57985 1.80456 1.87261 2.14445 2.57316 3.08208 3.38594 3.40419 3.43943 3.50015 3.52336 3.64236 3.77091 3.94232 4.03718 4.11190 4.12382 4.21922 4.23794 4.32926 4.40959 4.48596 4.51995 4.53646 4.56098 4.59473 4.62747 4.70164 4.75784 4.76913 4.81762 4.85667 4.89384 4.92471 4.99307 5.05580 5.09183 5.17880 5.30436 5.33236 5.39232 5.43414 5.51931 5.55326 5.84096 6.20346 6.29326 6.43346 7.00831 7.13168 7.35540 8.13613 8.34821 9.29802 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.002953 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.751248 B = 9478.949565 C =12375.275051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.094 0.906 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.543 3.457 7 O -0.574 6.574 8 C -0.102 4.102 9 H 0.110 0.890 10 C -0.112 4.112 11 C 0.103 3.897 12 N -0.456 5.456 13 C -0.040 4.040 14 C -0.063 4.063 15 N -0.530 5.530 16 C 0.191 3.809 17 C -0.013 4.013 18 C 0.101 3.899 19 C -0.082 4.082 20 H 0.086 0.914 21 C -0.101 4.101 22 C 0.150 3.850 23 N -0.749 5.749 24 C -0.244 4.244 25 H 0.075 0.925 26 C -0.076 4.076 27 N -0.969 5.969 28 Si 0.970 3.030 29 H -0.288 1.288 30 H -0.296 1.296 31 H -0.269 1.269 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.212 0.788 42 H 0.183 0.817 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.018 0.982 50 H 0.024 0.976 51 H 0.374 0.626 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -16.846 -18.388 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.113 0.887 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.332 3.668 7 O -0.453 6.453 8 C -0.123 4.123 9 H 0.128 0.872 10 C -0.150 4.150 11 C -0.018 4.018 12 N -0.139 5.139 13 C -0.173 4.173 14 C -0.211 4.211 15 N -0.250 5.250 16 C -0.072 4.072 17 C -0.053 4.053 18 C -0.022 4.022 19 C -0.102 4.102 20 H 0.105 0.895 21 C -0.139 4.139 22 C 0.024 3.976 23 N -0.392 5.392 24 C -0.376 4.376 25 H 0.093 0.907 26 C -0.268 4.268 27 N -0.620 5.620 28 Si 0.799 3.201 29 H -0.215 1.215 30 H -0.222 1.222 31 H -0.194 1.194 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.229 0.771 42 H 0.200 0.800 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.036 0.964 50 H 0.042 0.958 51 H 0.205 0.795 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.197 -16.637 -19.092 25.669 hybrid contribution 0.119 -0.164 1.247 1.263 sum -4.078 -16.801 -17.846 24.847 Atomic orbital electron populations 1.21809 0.93377 1.01940 1.02551 1.22121 0.97036 0.99766 0.92508 0.88723 1.22220 0.95923 0.86622 0.96733 1.48894 1.52958 1.14747 1.18122 1.20192 0.80979 0.81265 0.84368 1.90696 1.52798 1.78675 1.23175 1.21371 0.93515 0.94783 1.02668 0.87153 1.21720 1.01761 0.90621 1.00905 1.22282 0.74983 1.01315 1.03206 1.45654 1.08483 1.11239 1.48537 1.23146 0.86447 0.99302 1.08441 1.22807 1.00148 0.90683 1.07412 1.69981 1.11809 1.21977 1.21199 1.23168 0.89398 0.89812 1.04801 1.19928 0.90131 0.93206 1.02015 1.22776 0.97591 1.00358 0.81442 1.22141 0.96963 0.96928 0.94125 0.89531 1.21563 1.01205 0.97669 0.93452 1.20872 0.96171 0.92546 0.88017 1.42622 1.79138 1.05589 1.11807 1.19632 1.34522 0.92403 0.91047 0.90684 1.25539 1.03528 0.95627 1.02094 1.69802 1.55802 1.01851 1.34572 0.85194 0.77967 0.77297 0.79657 1.21508 1.22231 1.19353 0.92870 0.92132 0.91440 0.90912 0.90859 0.87498 0.90660 0.85996 0.87624 0.77121 0.79977 0.89398 0.88419 0.89086 0.89964 0.91617 0.91667 0.96431 0.95806 0.79467 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.89 71.98 0.64 -1.53 16 2 C -0.10 -1.61 3.17 -9.90 -0.03 -1.65 16 3 H 0.09 1.55 7.85 -2.39 -0.02 1.53 16 4 C 0.11 1.96 6.65 86.53 0.58 2.54 16 5 N -0.62 -12.03 3.29 -810.06 -2.67 -14.70 16 6 C 0.54 11.52 6.89 87.66 0.60 12.13 16 7 O -0.57 -15.89 16.69 -3.03 -0.05 -15.94 16 8 C -0.10 -1.68 2.25 -11.36 -0.03 -1.71 16 9 H 0.11 1.62 6.32 -2.38 -0.02 1.61 16 10 C -0.11 -1.45 4.72 30.73 0.15 -1.31 16 11 C 0.10 1.01 6.98 86.47 0.60 1.62 16 12 N -0.46 -7.85 3.13 -513.85 -1.61 -9.46 16 13 C -0.04 -0.64 11.65 83.22 0.97 0.33 16 14 C -0.06 -1.37 11.87 83.54 0.99 -0.38 16 15 N -0.53 -14.63 11.24 -187.51 -2.11 -16.74 16 16 C 0.19 4.38 7.65 138.23 1.06 5.44 16 17 C -0.01 -0.26 5.63 30.09 0.17 -0.10 16 18 C 0.10 1.88 5.75 86.61 0.50 2.38 16 19 C -0.08 -1.62 2.57 -9.70 -0.02 -1.64 16 20 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16 21 C -0.10 -2.68 4.70 30.59 0.14 -2.54 16 22 C 0.15 5.39 6.15 86.38 0.53 5.92 16 23 N -0.75 -36.72 5.60 -343.44 -1.92 -38.65 16 24 C -0.24 -13.37 9.99 84.04 0.84 -12.53 16 25 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 26 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 27 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 28 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 29 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 30 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 31 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 32 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.43 7.55 -2.38 -0.02 1.41 16 37 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.07 1.19 8.10 -2.38 -0.02 1.17 16 39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.21 1.61 8.06 -2.92 -0.02 1.59 16 42 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16 44 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.09 1.58 6.44 -2.39 -0.02 1.56 16 46 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 47 H 0.07 1.79 7.99 -2.38 -0.02 1.77 16 48 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16 51 H 0.37 19.52 7.67 -92.71 -0.71 18.81 16 52 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -75.57 412.03 2.30 -73.27 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.19 Total: 29.96 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 8.15 Total: 3.13 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -8.03 Total: -137.97 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.05 Total: -15.94 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.57 2.30 -73.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104366992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.716 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds