Wall clock time and date at job start Wed Apr 1 2020 04:54:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08991 * 110.37481 * 2 1
4 4 C 1.54007 * 110.32685 * 237.80904 * 2 1 3
5 5 N 1.47491 * 107.08419 * 242.41785 * 4 2 1
6 6 C 1.34774 * 127.03392 * 154.51396 * 5 4 2
7 7 O 1.21280 * 119.99923 * 354.96120 * 6 5 4
8 8 C 1.50698 * 119.99839 * 175.22592 * 6 5 4
9 9 H 1.09004 * 109.50832 * 28.16022 * 8 6 5
10 10 C 1.53147 * 109.50922 * 148.29434 * 8 6 5
11 11 C 1.53244 * 109.51132 * 189.40221 * 10 8 6
12 12 N 1.46476 * 108.80018 * 309.64471 * 11 10 8
13 13 C 1.36313 * 127.77721 * 197.15836 * 12 11 10
14 14 C 1.34861 * 106.68742 * 179.90786 * 13 12 11
15 15 N 1.34296 * 108.07081 * 0.02562 * 14 13 12
16 16 C 1.30094 * 109.21266 * 0.02562 * 15 14 13
17 17 C 1.51037 * 127.39061 * 179.97438 * 16 15 14
18 18 C 1.48118 * 105.92950 * 334.77808 * 5 4 2
19 19 C 1.54599 * 103.42402 * 39.02534 * 18 5 4
20 20 H 1.09001 * 110.57326 * 81.17285 * 19 18 5
21 21 C 1.52996 * 110.83254 * 204.44639 * 19 18 5
22 22 C 1.53005 * 109.47258 * 288.56470 * 21 19 18
23 23 N 1.46502 * 109.47268 * 179.97438 * 22 21 19
24 24 C 1.36934 * 119.99801 * 179.97438 * 23 22 21
25 25 H 1.07998 * 120.00181 * 0.02562 * 24 23 22
26 26 C 1.38817 * 119.99603 * 180.02562 * 24 23 22
27 27 N 1.31612 * 120.00254 * 0.02562 * 26 24 23
28 28 Si 1.86802 * 119.99592 * 180.02562 * 26 24 23
29 29 H 1.48500 * 109.47081 * 90.00060 * 28 26 24
30 30 H 1.48497 * 109.46803 * 209.99988 * 28 26 24
31 31 H 1.48497 * 109.47417 * 329.99894 * 28 26 24
32 32 H 1.08996 * 109.47477 * 180.73948 * 1 2 3
33 33 H 1.08998 * 109.47073 * 300.73862 * 1 2 3
34 34 H 1.09000 * 109.47082 * 60.73788 * 1 2 3
35 35 H 1.08992 * 109.91605 * 123.05247 * 4 2 1
36 36 H 1.09008 * 109.90944 * 1.77287 * 4 2 1
37 37 H 1.09004 * 109.47139 * 309.42320 * 10 8 6
38 38 H 1.09006 * 109.46487 * 69.39913 * 10 8 6
39 39 H 1.09001 * 109.60880 * 189.83769 * 11 10 8
40 40 H 1.09000 * 109.56021 * 69.42392 * 11 10 8
41 41 H 1.07991 * 126.65674 * 359.87100 * 13 12 11
42 42 H 1.07993 * 125.96562 * 179.97438 * 14 13 12
43 43 H 1.08997 * 109.71748 * 76.30315 * 17 16 15
44 44 H 1.09005 * 109.74944 * 315.68729 * 17 16 15
45 45 H 1.08997 * 110.65907 * 157.50931 * 18 5 4
46 46 H 1.09000 * 110.66090 * 280.62771 * 18 5 4
47 47 H 1.09005 * 109.47353 * 48.56205 * 21 19 18
48 48 H 1.08997 * 109.47216 * 168.56424 * 21 19 18
49 49 H 1.09005 * 109.46721 * 300.00121 * 22 21 19
50 50 H 1.08997 * 109.47045 * 59.99849 * 22 21 19
51 51 H 0.97003 * 119.99745 * 0.02562 * 23 22 21
52 52 H 0.97001 * 119.99945 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9094 1.0217 0.0000
4 6 2.0650 -0.7694 -1.2222
5 7 2.8276 -1.9225 -0.7084
6 6 3.0612 -3.0887 -1.3423
7 8 2.5480 -3.3068 -2.4194
8 6 3.9552 -4.1241 -0.7101
9 1 3.9159 -4.0254 0.3747
10 6 3.4826 -5.5235 -1.1146
11 6 4.2359 -6.5754 -0.2934
12 7 5.6718 -6.2972 -0.3733
13 6 6.7030 -7.1370 -0.0743
14 6 7.8407 -6.4489 -0.3001
15 7 7.5067 -5.2198 -0.7258
16 6 6.2104 -5.1202 -0.7717
17 6 5.3971 -3.9188 -1.1916
18 6 3.2788 -1.5392 0.6493
19 6 2.0670 -0.7724 1.2270
20 1 1.3174 -1.4684 1.6035
21 6 2.5094 0.1961 2.3257
22 6 2.9176 -0.5958 3.5696
23 7 3.3419 0.3316 4.6215
24 6 3.7538 -0.1514 5.8348
25 1 3.7663 -1.2160 6.0162
26 6 4.1553 0.7273 6.8316
27 7 4.1396 2.0247 6.6107
28 14 4.7179 0.0684 8.4865
29 1 6.1831 -0.1708 8.4519
30 1 4.4030 1.0593 9.5467
31 1 4.0148 -1.2071 8.7764
32 1 -0.3634 -1.0275 0.0133
33 1 -0.3633 0.5253 0.8833
34 1 -0.3633 0.5023 -0.8965
35 1 2.7180 -0.1245 -1.8101
36 1 1.2333 -1.1176 -1.8348
37 1 2.4127 -5.6141 -0.9270
38 1 3.6799 -5.6812 -2.1750
39 1 4.0332 -7.5679 -0.6960
40 1 3.9119 -6.5275 0.7462
41 1 6.6243 -8.1554 0.2761
42 1 8.8451 -6.8210 -0.1619
43 1 5.4123 -3.8257 -2.2775
44 1 5.8112 -3.0174 -0.7396
45 1 3.4933 -2.4247 1.2475
46 1 4.1522 -0.8893 0.5952
47 1 3.3584 0.7821 1.9733
48 1 1.6851 0.8642 2.5747
49 1 2.0687 -1.1817 3.9220
50 1 3.7420 -1.2639 3.3207
51 1 3.3303 1.2878 4.4586
52 1 4.4205 2.6387 7.3071
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001104366992.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:05
Heat of formation + Delta-G solvation = 6.441812 kcal
Electronic energy + Delta-G solvation = -30762.061843 eV
Core-core repulsion = 26761.213063 eV
Total energy + Delta-G solvation = -4000.848780 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-43.30560 -41.40249 -39.43644 -37.21730 -36.78292 -34.66611 -34.27460 -33.46023
-31.76703 -30.87081 -29.83486 -28.46940 -27.60223 -25.93765 -25.52149 -24.20638
-23.57883 -22.40008 -21.98555 -20.91330 -20.38750 -19.91598 -19.13171 -18.26083
-17.98446 -17.20263 -16.97175 -16.63849 -16.36873 -15.88764 -15.65891 -15.32210
-15.24168 -15.10264 -14.89108 -14.79042 -14.69448 -14.46685 -14.36953 -14.18272
-13.73232 -13.46665 -13.22306 -13.11697 -12.99819 -12.88575 -12.84131 -12.68371
-12.40261 -12.31014 -12.25020 -12.20150 -12.10927 -11.86735 -11.56659 -11.49474
-11.25089 -10.99807 -10.91619 -10.87091 -10.55630 -9.76693 -9.31189 -8.96942
-7.93870 -5.21978 1.08492 1.42483 1.48489 1.49917 1.57985 1.80456
1.87261 2.14445 2.57316 3.08208 3.38594 3.40419 3.43943 3.50015
3.52336 3.64236 3.77091 3.94232 4.03718 4.11190 4.12382 4.21922
4.23794 4.32926 4.40959 4.48596 4.51995 4.53646 4.56098 4.59473
4.62747 4.70164 4.75784 4.76913 4.81762 4.85667 4.89384 4.92471
4.99307 5.05580 5.09183 5.17880 5.30436 5.33236 5.39232 5.43414
5.51931 5.55326 5.84096 6.20346 6.29326 6.43346 7.00831 7.13168
7.35540 8.13613 8.34821 9.29802
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.007746 B = 0.002953 C = 0.002262
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3613.751248 B = 9478.949565 C =12375.275051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.095 4.095
3 H 0.094 0.906
4 C 0.107 3.893
5 N -0.615 5.615
6 C 0.543 3.457
7 O -0.574 6.574
8 C -0.102 4.102
9 H 0.110 0.890
10 C -0.112 4.112
11 C 0.103 3.897
12 N -0.456 5.456
13 C -0.040 4.040
14 C -0.063 4.063
15 N -0.530 5.530
16 C 0.191 3.809
17 C -0.013 4.013
18 C 0.101 3.899
19 C -0.082 4.082
20 H 0.086 0.914
21 C -0.101 4.101
22 C 0.150 3.850
23 N -0.749 5.749
24 C -0.244 4.244
25 H 0.075 0.925
26 C -0.076 4.076
27 N -0.969 5.969
28 Si 0.970 3.030
29 H -0.288 1.288
30 H -0.296 1.296
31 H -0.269 1.269
32 H 0.052 0.948
33 H 0.060 0.940
34 H 0.067 0.933
35 H 0.073 0.927
36 H 0.073 0.927
37 H 0.107 0.893
38 H 0.075 0.925
39 H 0.122 0.878
40 H 0.106 0.894
41 H 0.212 0.788
42 H 0.183 0.817
43 H 0.088 0.912
44 H 0.097 0.903
45 H 0.091 0.909
46 H 0.082 0.918
47 H 0.065 0.935
48 H 0.065 0.935
49 H 0.018 0.982
50 H 0.024 0.976
51 H 0.374 0.626
52 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.350 -16.846 -18.388 25.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.114 4.114
3 H 0.113 0.887
4 C -0.015 4.015
5 N -0.347 5.347
6 C 0.332 3.668
7 O -0.453 6.453
8 C -0.123 4.123
9 H 0.128 0.872
10 C -0.150 4.150
11 C -0.018 4.018
12 N -0.139 5.139
13 C -0.173 4.173
14 C -0.211 4.211
15 N -0.250 5.250
16 C -0.072 4.072
17 C -0.053 4.053
18 C -0.022 4.022
19 C -0.102 4.102
20 H 0.105 0.895
21 C -0.139 4.139
22 C 0.024 3.976
23 N -0.392 5.392
24 C -0.376 4.376
25 H 0.093 0.907
26 C -0.268 4.268
27 N -0.620 5.620
28 Si 0.799 3.201
29 H -0.215 1.215
30 H -0.222 1.222
31 H -0.194 1.194
32 H 0.071 0.929
33 H 0.079 0.921
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.125 0.875
38 H 0.093 0.907
39 H 0.140 0.860
40 H 0.124 0.876
41 H 0.229 0.771
42 H 0.200 0.800
43 H 0.106 0.894
44 H 0.116 0.884
45 H 0.109 0.891
46 H 0.100 0.900
47 H 0.084 0.916
48 H 0.083 0.917
49 H 0.036 0.964
50 H 0.042 0.958
51 H 0.205 0.795
52 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -4.197 -16.637 -19.092 25.669
hybrid contribution 0.119 -0.164 1.247 1.263
sum -4.078 -16.801 -17.846 24.847
Atomic orbital electron populations
1.21809 0.93377 1.01940 1.02551 1.22121 0.97036 0.99766 0.92508
0.88723 1.22220 0.95923 0.86622 0.96733 1.48894 1.52958 1.14747
1.18122 1.20192 0.80979 0.81265 0.84368 1.90696 1.52798 1.78675
1.23175 1.21371 0.93515 0.94783 1.02668 0.87153 1.21720 1.01761
0.90621 1.00905 1.22282 0.74983 1.01315 1.03206 1.45654 1.08483
1.11239 1.48537 1.23146 0.86447 0.99302 1.08441 1.22807 1.00148
0.90683 1.07412 1.69981 1.11809 1.21977 1.21199 1.23168 0.89398
0.89812 1.04801 1.19928 0.90131 0.93206 1.02015 1.22776 0.97591
1.00358 0.81442 1.22141 0.96963 0.96928 0.94125 0.89531 1.21563
1.01205 0.97669 0.93452 1.20872 0.96171 0.92546 0.88017 1.42622
1.79138 1.05589 1.11807 1.19632 1.34522 0.92403 0.91047 0.90684
1.25539 1.03528 0.95627 1.02094 1.69802 1.55802 1.01851 1.34572
0.85194 0.77967 0.77297 0.79657 1.21508 1.22231 1.19353 0.92870
0.92132 0.91440 0.90912 0.90859 0.87498 0.90660 0.85996 0.87624
0.77121 0.79977 0.89398 0.88419 0.89086 0.89964 0.91617 0.91667
0.96431 0.95806 0.79467 0.94035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.17 8.89 71.98 0.64 -1.53 16
2 C -0.10 -1.61 3.17 -9.90 -0.03 -1.65 16
3 H 0.09 1.55 7.85 -2.39 -0.02 1.53 16
4 C 0.11 1.96 6.65 86.53 0.58 2.54 16
5 N -0.62 -12.03 3.29 -810.06 -2.67 -14.70 16
6 C 0.54 11.52 6.89 87.66 0.60 12.13 16
7 O -0.57 -15.89 16.69 -3.03 -0.05 -15.94 16
8 C -0.10 -1.68 2.25 -11.36 -0.03 -1.71 16
9 H 0.11 1.62 6.32 -2.38 -0.02 1.61 16
10 C -0.11 -1.45 4.72 30.73 0.15 -1.31 16
11 C 0.10 1.01 6.98 86.47 0.60 1.62 16
12 N -0.46 -7.85 3.13 -513.85 -1.61 -9.46 16
13 C -0.04 -0.64 11.65 83.22 0.97 0.33 16
14 C -0.06 -1.37 11.87 83.54 0.99 -0.38 16
15 N -0.53 -14.63 11.24 -187.51 -2.11 -16.74 16
16 C 0.19 4.38 7.65 138.23 1.06 5.44 16
17 C -0.01 -0.26 5.63 30.09 0.17 -0.10 16
18 C 0.10 1.88 5.75 86.61 0.50 2.38 16
19 C -0.08 -1.62 2.57 -9.70 -0.02 -1.64 16
20 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16
21 C -0.10 -2.68 4.70 30.59 0.14 -2.54 16
22 C 0.15 5.39 6.15 86.38 0.53 5.92 16
23 N -0.75 -36.72 5.60 -343.44 -1.92 -38.65 16
24 C -0.24 -13.37 9.99 84.04 0.84 -12.53 16
25 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16
26 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16
27 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16
28 Si 0.97 45.52 29.55 68.60 2.03 47.55 16
29 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
30 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16
31 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
32 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16
33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.07 1.43 7.55 -2.38 -0.02 1.41 16
37 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16
38 H 0.07 1.19 8.10 -2.38 -0.02 1.17 16
39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16
40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16
41 H 0.21 1.61 8.06 -2.92 -0.02 1.59 16
42 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16
43 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16
44 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16
45 H 0.09 1.58 6.44 -2.39 -0.02 1.56 16
46 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16
47 H 0.07 1.79 7.99 -2.38 -0.02 1.77 16
48 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
49 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16
50 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16
51 H 0.37 19.52 7.67 -92.71 -0.71 18.81 16
52 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
Total: -1.00 -75.57 412.03 2.30 -73.27
By element:
Atomic # 1 Polarization: 29.76 SS G_CDS: 0.19 Total: 29.96 kcal
Atomic # 6 Polarization: -5.03 SS G_CDS: 8.15 Total: 3.13 kcal
Atomic # 7 Polarization: -129.94 SS G_CDS: -8.03 Total: -137.97 kcal
Atomic # 8 Polarization: -15.89 SS G_CDS: -0.05 Total: -15.94 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -75.57 2.30 -73.27 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001104366992.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.716 kcal
(2) G-P(sol) polarization free energy of solvation -75.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds