Wall clock time and date at job start Wed Apr 1 2020 04:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.29061 * 2 1 4 4 C 1.54000 * 110.32265 * 237.86915 * 2 1 3 5 5 N 1.47483 * 107.24591 * 242.21397 * 4 2 1 6 6 C 1.34782 * 127.03686 * 154.61862 * 5 4 2 7 7 O 1.21277 * 120.00029 * 174.92895 * 6 5 4 8 8 C 1.50705 * 119.99579 * 354.93046 * 6 5 4 9 9 H 1.08999 * 109.67507 * 334.26122 * 8 6 5 10 10 C 1.53390 * 109.68160 * 94.78053 * 8 6 5 11 11 C 1.53123 * 109.44777 * 169.37500 * 10 8 6 12 12 C 1.53350 * 109.53455 * 289.99682 * 11 10 8 13 13 C 1.50867 * 108.41170 * 49.97870 * 12 11 10 14 14 N 1.33574 * 128.03258 * 163.26171 * 13 12 11 15 15 C 1.30916 * 109.13516 * 180.17567 * 14 13 12 16 16 N 1.35310 * 108.75463 * 359.90592 * 15 14 13 17 17 H 0.96995 * 126.50106 * 180.02562 * 16 15 14 18 18 C 1.35079 * 124.00730 * 343.33257 * 13 12 11 19 19 C 1.48386 * 105.79461 * 334.78076 * 5 4 2 20 20 C 1.54607 * 110.41355 * 122.19561 * 2 1 3 21 21 H 1.09001 * 110.74649 * 22.44983 * 20 2 1 22 22 C 1.53004 * 110.74151 * 259.11760 * 20 2 1 23 23 C 1.53000 * 109.47047 * 174.99929 * 22 20 2 24 24 N 1.46502 * 109.46782 * 180.02562 * 23 22 20 25 25 C 1.36930 * 120.00028 * 180.02562 * 24 23 22 26 26 H 1.07999 * 120.00311 * 0.02562 * 25 24 23 27 27 C 1.38821 * 120.00130 * 179.97438 * 25 24 23 28 28 N 1.31606 * 120.00087 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 119.99754 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47222 * 90.00376 * 29 27 25 31 31 H 1.48502 * 109.47138 * 210.00135 * 29 27 25 32 32 H 1.48503 * 109.47729 * 330.00077 * 29 27 25 33 33 H 1.09002 * 109.47134 * 180.68184 * 1 2 3 34 34 H 1.09008 * 109.46936 * 300.68066 * 1 2 3 35 35 H 1.09004 * 109.47542 * 60.67422 * 1 2 3 36 36 H 1.08996 * 109.91927 * 1.66961 * 4 2 1 37 37 H 1.09005 * 109.91602 * 122.75840 * 4 2 1 38 38 H 1.09004 * 109.47751 * 289.36982 * 10 8 6 39 39 H 1.09004 * 109.47991 * 49.38486 * 10 8 6 40 40 H 1.08995 * 109.45943 * 50.01884 * 11 10 8 41 41 H 1.08999 * 109.45847 * 169.97845 * 11 10 8 42 42 H 1.08998 * 109.67435 * 169.70601 * 12 11 10 43 43 H 1.08998 * 109.67993 * 290.21342 * 12 11 10 44 44 H 1.07999 * 125.62730 * 179.97438 * 15 14 13 45 45 H 1.08996 * 110.52353 * 280.62676 * 19 5 4 46 46 H 1.09004 * 110.68902 * 157.58971 * 19 5 4 47 47 H 1.08995 * 109.47549 * 295.00430 * 22 20 2 48 48 H 1.09008 * 109.46440 * 55.00543 * 22 20 2 49 49 H 1.08995 * 109.47355 * 300.00620 * 23 22 20 50 50 H 1.08998 * 109.46990 * 60.01113 * 23 22 20 51 51 H 0.97006 * 120.00344 * 0.02562 * 24 23 22 52 52 H 0.97002 * 120.00460 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7681 -1.2229 5 7 2.8325 -1.9201 -0.7143 6 6 3.0688 -3.0836 -1.3523 7 8 3.7965 -3.9137 -0.8500 8 6 2.4289 -3.3529 -2.6899 9 1 1.5085 -2.7759 -2.7792 10 6 3.3961 -2.9601 -3.8138 11 6 2.8587 -3.4751 -5.1520 12 6 2.9644 -5.0044 -5.1926 13 6 2.3590 -5.5577 -3.9262 14 7 1.9661 -6.8105 -3.6810 15 6 1.4909 -6.8806 -2.4631 16 7 1.5725 -5.6561 -1.8931 17 1 1.2928 -5.4177 -0.9955 18 6 2.1214 -4.8222 -2.8184 19 6 3.2863 -1.5347 0.6448 20 6 2.0693 -0.7720 1.2262 21 1 1.3210 -1.4693 1.6031 22 6 2.5114 0.1967 2.3249 23 6 2.9218 -0.5952 3.5681 24 7 3.3446 0.3325 4.6202 25 6 3.7590 -0.1504 5.8327 26 1 3.7746 -1.2151 6.0133 27 6 4.1602 0.7285 6.8295 28 7 4.1416 2.0259 6.6094 29 14 4.7248 0.0698 8.4838 30 1 6.1903 -0.1675 8.4480 31 1 4.4095 1.0598 9.5447 32 1 4.0237 -1.2068 8.7739 33 1 -0.3633 -1.0276 0.0122 34 1 -0.3633 0.5244 0.8839 35 1 -0.3634 0.5033 -0.8960 36 1 1.2333 -1.1172 -1.8350 37 1 2.7138 -0.1210 -1.8131 38 1 3.4869 -1.8746 -3.8522 39 1 4.3746 -3.4002 -3.6216 40 1 1.8153 -3.1801 -5.2620 41 1 3.4443 -3.0489 -5.9666 42 1 2.4211 -5.3870 -6.0566 43 1 4.0119 -5.2984 -5.2581 44 1 1.0995 -7.7694 -1.9907 45 1 4.1571 -0.8817 0.5861 46 1 3.5072 -2.4192 1.2424 47 1 3.3591 0.7840 1.9720 48 1 1.6862 0.8636 2.5749 49 1 2.0741 -1.1825 3.9210 50 1 3.7470 -1.2620 3.3181 51 1 3.3309 1.2888 4.4580 52 1 4.4216 2.6402 7.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104665311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:13 Heat of formation + Delta-G solvation = 15.166617 kcal Electronic energy + Delta-G solvation = -30701.088622 eV Core-core repulsion = 26700.618178 eV Total energy + Delta-G solvation = -4000.470444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59076 -40.40095 -38.39525 -36.70337 -35.20623 -33.52429 -33.18358 -32.13521 -30.75807 -30.04048 -29.24329 -27.27512 -26.69035 -24.90285 -23.81072 -22.59091 -22.57428 -21.89890 -20.85498 -20.18968 -19.70126 -19.19897 -17.94695 -17.52297 -17.13033 -16.11084 -15.78586 -15.44283 -14.97196 -14.79097 -14.73615 -14.63727 -14.27785 -14.04927 -13.90784 -13.62782 -13.43753 -13.33165 -13.21854 -13.07673 -12.87657 -12.60564 -12.41695 -12.18680 -11.80195 -11.70196 -11.44882 -11.33846 -11.30142 -11.27292 -11.06181 -10.85425 -10.67393 -10.51839 -10.34662 -10.29670 -10.08003 -10.01406 -9.87576 -9.69242 -8.91625 -8.88762 -8.40812 -6.94204 -5.78403 -3.07010 1.74117 2.29251 2.66700 2.85459 2.90359 3.42641 3.47799 3.49281 4.00555 4.15560 4.27595 4.30439 4.40453 4.47398 4.59080 4.60060 4.68189 4.79258 4.88194 4.95812 4.99185 5.10149 5.16375 5.21679 5.25638 5.27472 5.39120 5.46783 5.49634 5.54148 5.55169 5.59024 5.65594 5.67846 5.77308 5.78718 5.81182 5.90177 5.91962 5.97280 5.98307 6.07437 6.21199 6.32275 6.35690 6.49171 6.79619 6.83504 7.11662 7.28768 7.68644 7.82847 7.88076 8.40761 9.51837 10.09700 10.44137 11.44569 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002094 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.889850 B =13366.004315 C =14167.485504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.620 5.620 6 C 0.530 3.470 7 O -0.531 6.531 8 C -0.025 4.025 9 H 0.101 0.899 10 C -0.103 4.103 11 C -0.115 4.115 12 C -0.035 4.035 13 C 0.012 3.988 14 N -0.487 5.487 15 C 0.182 3.818 16 N -0.549 5.549 17 H 0.420 0.580 18 C -0.007 4.007 19 C 0.108 3.892 20 C -0.090 4.090 21 H 0.082 0.918 22 C -0.115 4.115 23 C 0.152 3.848 24 N -0.734 5.734 25 C -0.239 4.239 26 H 0.070 0.930 27 C -0.015 4.015 28 N -0.934 5.934 29 Si 0.907 3.093 30 H -0.289 1.289 31 H -0.291 1.291 32 H -0.282 1.282 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.209 0.791 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.016 0.984 50 H 0.018 0.982 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -8.292 -26.469 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.022 4.022 5 N -0.354 5.354 6 C 0.317 3.683 7 O -0.406 6.406 8 C -0.047 4.047 9 H 0.119 0.881 10 C -0.142 4.142 11 C -0.153 4.153 12 C -0.073 4.073 13 C -0.119 4.119 14 N -0.206 5.206 15 C -0.101 4.101 16 N -0.150 5.150 17 H 0.258 0.742 18 C -0.124 4.124 19 C -0.013 4.013 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.153 4.153 23 C 0.024 3.976 24 N -0.378 5.378 25 C -0.371 4.371 26 H 0.088 0.912 27 C -0.211 4.211 28 N -0.583 5.583 29 Si 0.738 3.262 30 H -0.217 1.217 31 H -0.217 1.217 32 H -0.208 1.208 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.034 0.966 50 H 0.036 0.964 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.522 -9.636 -26.698 29.636 hybrid contribution 0.054 0.746 2.197 2.321 sum -8.468 -8.890 -24.502 27.406 Atomic orbital electron populations 1.21843 0.94033 1.01850 1.02270 1.22170 0.96449 0.99956 0.93693 0.89140 1.22304 0.95449 0.87437 0.96993 1.48968 1.53325 1.14849 1.18226 1.20161 0.81552 0.80361 0.86184 1.90761 1.37038 1.45359 1.67485 1.19834 1.00285 0.90765 0.93832 0.88149 1.21526 0.98509 1.01446 0.92679 1.21595 1.01929 0.95097 0.96646 1.19955 1.00468 0.93938 0.92975 1.20458 1.05575 0.89575 0.96309 1.70048 1.15965 1.20235 1.14360 1.25058 1.05070 0.88907 0.91052 1.42874 1.47415 1.09741 1.14985 0.74226 1.20198 1.07599 0.93031 0.91590 1.22727 0.97091 0.99952 0.81560 1.22338 0.96783 0.97342 0.94509 0.89918 1.21728 1.01359 0.97629 0.94581 1.20667 0.96341 0.92824 0.87726 1.42359 1.79092 1.05126 1.11229 1.19233 1.35726 0.92123 0.89969 0.91239 1.24746 1.02428 0.95333 0.98572 1.69651 1.54222 1.00699 1.33717 0.86186 0.78531 0.77620 0.83845 1.21677 1.21737 1.20772 0.92783 0.91718 0.92511 0.90811 0.91127 0.90342 0.90413 0.91290 0.90360 0.90281 0.90483 0.77475 0.90439 0.89632 0.91546 0.91315 0.96572 0.96412 0.78318 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.90 37.16 0.33 -0.71 16 2 C -0.10 -0.86 3.17 -89.25 -0.28 -1.14 16 3 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 4 C 0.10 0.75 6.44 -2.98 -0.02 0.73 16 5 N -0.62 -6.47 3.30 -169.54 -0.56 -7.03 16 6 C 0.53 6.22 6.84 -10.98 -0.08 6.15 16 7 O -0.53 -8.51 16.66 5.56 0.09 -8.42 16 8 C -0.02 -0.22 2.55 -92.74 -0.24 -0.45 16 9 H 0.10 0.69 6.51 -51.93 -0.34 0.35 16 10 C -0.10 -0.76 5.22 -26.47 -0.14 -0.90 16 11 C -0.11 -0.69 5.90 -26.49 -0.16 -0.85 16 12 C -0.04 -0.29 6.30 -27.62 -0.17 -0.47 16 13 C 0.01 0.13 6.98 -82.88 -0.58 -0.45 16 14 N -0.49 -6.01 11.25 -10.70 -0.12 -6.13 16 15 C 0.18 1.77 13.05 -89.78 -1.17 0.60 16 16 N -0.55 -5.34 6.02 -10.24 -0.06 -5.40 16 17 H 0.42 3.39 8.96 -40.82 -0.37 3.02 16 18 C -0.01 -0.07 5.90 -81.83 -0.48 -0.55 16 19 C 0.11 1.32 5.93 -1.97 -0.01 1.31 16 20 C -0.09 -1.01 2.59 -88.75 -0.23 -1.24 16 21 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 22 C -0.11 -1.66 4.70 -26.73 -0.13 -1.78 16 23 C 0.15 2.96 6.15 -4.04 -0.02 2.94 16 24 N -0.73 -18.56 5.60 -59.91 -0.34 -18.90 16 25 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 26 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 27 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 28 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 29 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 31 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 32 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 6.21 -51.93 -0.32 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.21 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 46 H 0.09 1.21 7.89 -51.93 -0.41 0.80 16 47 H 0.07 0.97 7.99 -51.93 -0.42 0.56 16 48 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.02 0.36 7.67 -51.93 -0.40 -0.04 16 51 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -36.03 411.27 -11.54 -47.57 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.83 Total: 6.39 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.62 Total: -4.26 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.35 Total: -65.02 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.03 -11.54 -47.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104665311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.733 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds