Wall clock time and date at job start Wed Apr 1 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.29061 * 2 1 4 4 C 1.54000 * 110.32265 * 237.86915 * 2 1 3 5 5 N 1.47483 * 107.24591 * 242.21397 * 4 2 1 6 6 C 1.34782 * 127.03686 * 154.61862 * 5 4 2 7 7 O 1.21277 * 120.00029 * 174.92895 * 6 5 4 8 8 C 1.50705 * 119.99579 * 354.93046 * 6 5 4 9 9 H 1.08999 * 109.67507 * 334.26122 * 8 6 5 10 10 C 1.53390 * 109.68160 * 94.78053 * 8 6 5 11 11 C 1.53123 * 109.44777 * 169.37500 * 10 8 6 12 12 C 1.53350 * 109.53455 * 289.99682 * 11 10 8 13 13 C 1.50867 * 108.41170 * 49.97870 * 12 11 10 14 14 N 1.33574 * 128.03258 * 163.26171 * 13 12 11 15 15 C 1.30916 * 109.13516 * 180.17567 * 14 13 12 16 16 N 1.35310 * 108.75463 * 359.90592 * 15 14 13 17 17 H 0.96995 * 126.50106 * 180.02562 * 16 15 14 18 18 C 1.35079 * 124.00730 * 343.33257 * 13 12 11 19 19 C 1.48386 * 105.79461 * 334.78076 * 5 4 2 20 20 C 1.54607 * 110.41355 * 122.19561 * 2 1 3 21 21 H 1.09001 * 110.74649 * 22.44983 * 20 2 1 22 22 C 1.53004 * 110.74151 * 259.11760 * 20 2 1 23 23 C 1.53000 * 109.47047 * 174.99929 * 22 20 2 24 24 N 1.46502 * 109.46782 * 180.02562 * 23 22 20 25 25 C 1.36930 * 120.00028 * 180.02562 * 24 23 22 26 26 H 1.07999 * 120.00311 * 0.02562 * 25 24 23 27 27 C 1.38821 * 120.00130 * 179.97438 * 25 24 23 28 28 N 1.31606 * 120.00087 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 119.99754 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47222 * 90.00376 * 29 27 25 31 31 H 1.48502 * 109.47138 * 210.00135 * 29 27 25 32 32 H 1.48503 * 109.47729 * 330.00077 * 29 27 25 33 33 H 1.09002 * 109.47134 * 180.68184 * 1 2 3 34 34 H 1.09008 * 109.46936 * 300.68066 * 1 2 3 35 35 H 1.09004 * 109.47542 * 60.67422 * 1 2 3 36 36 H 1.08996 * 109.91927 * 1.66961 * 4 2 1 37 37 H 1.09005 * 109.91602 * 122.75840 * 4 2 1 38 38 H 1.09004 * 109.47751 * 289.36982 * 10 8 6 39 39 H 1.09004 * 109.47991 * 49.38486 * 10 8 6 40 40 H 1.08995 * 109.45943 * 50.01884 * 11 10 8 41 41 H 1.08999 * 109.45847 * 169.97845 * 11 10 8 42 42 H 1.08998 * 109.67435 * 169.70601 * 12 11 10 43 43 H 1.08998 * 109.67993 * 290.21342 * 12 11 10 44 44 H 1.07999 * 125.62730 * 179.97438 * 15 14 13 45 45 H 1.08996 * 110.52353 * 280.62676 * 19 5 4 46 46 H 1.09004 * 110.68902 * 157.58971 * 19 5 4 47 47 H 1.08995 * 109.47549 * 295.00430 * 22 20 2 48 48 H 1.09008 * 109.46440 * 55.00543 * 22 20 2 49 49 H 1.08995 * 109.47355 * 300.00620 * 23 22 20 50 50 H 1.08998 * 109.46990 * 60.01113 * 23 22 20 51 51 H 0.97006 * 120.00344 * 0.02562 * 24 23 22 52 52 H 0.97002 * 120.00460 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7681 -1.2229 5 7 2.8325 -1.9201 -0.7143 6 6 3.0688 -3.0836 -1.3523 7 8 3.7965 -3.9137 -0.8500 8 6 2.4289 -3.3529 -2.6899 9 1 1.5085 -2.7759 -2.7792 10 6 3.3961 -2.9601 -3.8138 11 6 2.8587 -3.4751 -5.1520 12 6 2.9644 -5.0044 -5.1926 13 6 2.3590 -5.5577 -3.9262 14 7 1.9661 -6.8105 -3.6810 15 6 1.4909 -6.8806 -2.4631 16 7 1.5725 -5.6561 -1.8931 17 1 1.2928 -5.4177 -0.9955 18 6 2.1214 -4.8222 -2.8184 19 6 3.2863 -1.5347 0.6448 20 6 2.0693 -0.7720 1.2262 21 1 1.3210 -1.4693 1.6031 22 6 2.5114 0.1967 2.3249 23 6 2.9218 -0.5952 3.5681 24 7 3.3446 0.3325 4.6202 25 6 3.7590 -0.1504 5.8327 26 1 3.7746 -1.2151 6.0133 27 6 4.1602 0.7285 6.8295 28 7 4.1416 2.0259 6.6094 29 14 4.7248 0.0698 8.4838 30 1 6.1903 -0.1675 8.4480 31 1 4.4095 1.0598 9.5447 32 1 4.0237 -1.2068 8.7739 33 1 -0.3633 -1.0276 0.0122 34 1 -0.3633 0.5244 0.8839 35 1 -0.3634 0.5033 -0.8960 36 1 1.2333 -1.1172 -1.8350 37 1 2.7138 -0.1210 -1.8131 38 1 3.4869 -1.8746 -3.8522 39 1 4.3746 -3.4002 -3.6216 40 1 1.8153 -3.1801 -5.2620 41 1 3.4443 -3.0489 -5.9666 42 1 2.4211 -5.3870 -6.0566 43 1 4.0119 -5.2984 -5.2581 44 1 1.0995 -7.7694 -1.9907 45 1 4.1571 -0.8817 0.5861 46 1 3.5072 -2.4192 1.2424 47 1 3.3591 0.7840 1.9720 48 1 1.6862 0.8636 2.5749 49 1 2.0741 -1.1825 3.9210 50 1 3.7470 -1.2620 3.3181 51 1 3.3309 1.2888 4.4580 52 1 4.4216 2.6402 7.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104665311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:12 Heat of formation + Delta-G solvation = -7.393370 kcal Electronic energy + Delta-G solvation = -30702.066896 eV Core-core repulsion = 26700.618178 eV Total energy + Delta-G solvation = -4001.448719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.32837 -41.26974 -39.31420 -37.36948 -36.89822 -34.67945 -34.09517 -33.43377 -31.92573 -31.14264 -29.91889 -28.58613 -27.35514 -26.19468 -24.97487 -23.95676 -23.20206 -22.67555 -22.09098 -21.08344 -20.50800 -19.86956 -19.19487 -18.69447 -18.32321 -17.05742 -16.69484 -16.61951 -16.19947 -15.81566 -15.64069 -15.43344 -15.32997 -15.18786 -15.02659 -14.72194 -14.54929 -14.34941 -14.25075 -13.98376 -13.62619 -13.48401 -13.23360 -13.16411 -12.93622 -12.90079 -12.68133 -12.44058 -12.33993 -12.29092 -12.14519 -11.92410 -11.87549 -11.82327 -11.59213 -11.53796 -11.28574 -11.13298 -10.95662 -10.84854 -10.72460 -9.78248 -9.15470 -9.03602 -7.99043 -5.27853 0.98945 1.41576 1.44485 1.46195 1.54579 1.84033 2.12307 2.17600 2.52790 3.26684 3.34354 3.46538 3.53961 3.66626 3.70728 3.73429 3.84926 4.01854 4.11288 4.19202 4.23852 4.29561 4.30610 4.38603 4.45356 4.48765 4.49303 4.58096 4.66243 4.68685 4.72283 4.77450 4.89045 4.89623 4.92222 4.98000 5.00175 5.07276 5.11583 5.17116 5.19272 5.28761 5.29645 5.34824 5.40295 5.40736 5.46005 5.54088 5.78097 6.24135 6.41024 6.48507 6.99148 7.08411 7.30198 8.06322 8.29866 9.24326 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002094 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.889850 B =13366.004315 C =14167.485504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.097 0.903 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.528 3.472 7 O -0.584 6.584 8 C -0.016 4.016 9 H 0.130 0.870 10 C -0.102 4.102 11 C -0.105 4.105 12 C -0.039 4.039 13 C -0.011 4.011 14 N -0.526 5.526 15 C 0.181 3.819 16 N -0.551 5.551 17 H 0.426 0.574 18 C -0.021 4.021 19 C 0.107 3.893 20 C -0.080 4.080 21 H 0.080 0.920 22 C -0.099 4.099 23 C 0.150 3.850 24 N -0.747 5.747 25 C -0.249 4.249 26 H 0.070 0.930 27 C -0.074 4.074 28 N -0.967 5.967 29 Si 0.973 3.027 30 H -0.287 1.287 31 H -0.291 1.291 32 H -0.271 1.271 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.240 0.760 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.014 0.986 50 H 0.012 0.988 51 H 0.375 0.625 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -7.608 -28.195 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.116 0.884 4 C -0.022 4.022 5 N -0.348 5.348 6 C 0.318 3.682 7 O -0.464 6.464 8 C -0.038 4.038 9 H 0.148 0.852 10 C -0.140 4.140 11 C -0.142 4.142 12 C -0.077 4.077 13 C -0.141 4.141 14 N -0.245 5.245 15 C -0.102 4.102 16 N -0.152 5.152 17 H 0.264 0.736 18 C -0.139 4.139 19 C -0.016 4.016 20 C -0.100 4.100 21 H 0.098 0.902 22 C -0.138 4.138 23 C 0.023 3.977 24 N -0.390 5.390 25 C -0.381 4.381 26 H 0.088 0.912 27 C -0.267 4.267 28 N -0.617 5.617 29 Si 0.801 3.199 30 H -0.214 1.214 31 H -0.218 1.218 32 H -0.196 1.196 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.256 0.744 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.208 0.792 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.931 -8.948 -28.457 31.440 hybrid contribution 0.485 0.462 2.741 2.822 sum -9.446 -8.486 -25.715 28.680 Atomic orbital electron populations 1.21836 0.92866 1.02102 1.02949 1.22145 0.97319 0.99897 0.92150 0.88424 1.22565 0.96413 0.86411 0.96850 1.49003 1.52994 1.15424 1.17340 1.20709 0.80815 0.79826 0.86861 1.90736 1.39530 1.47139 1.68972 1.19930 1.01474 0.90121 0.92263 0.85222 1.21579 0.96856 1.02857 0.92730 1.21575 1.03125 0.93073 0.96463 1.20085 0.99777 0.95816 0.92021 1.21009 1.05850 0.89509 0.97734 1.70044 1.17479 1.21190 1.15819 1.25739 1.04036 0.89826 0.90627 1.42957 1.47219 1.09788 1.15207 0.73567 1.20552 1.07663 0.94036 0.91604 1.22579 0.97536 0.98761 0.82681 1.22178 0.96253 0.96797 0.94775 0.90209 1.21561 1.01347 0.97615 0.93230 1.20843 0.95750 0.92585 0.88485 1.42583 1.79133 1.05520 1.11747 1.19605 1.35002 0.92291 0.91235 0.91154 1.25568 1.03273 0.95674 1.02169 1.69793 1.55538 1.01746 1.34656 0.85156 0.77966 0.77277 0.79464 1.21398 1.21758 1.19632 0.92709 0.92793 0.90188 0.87972 0.89027 0.87780 0.92923 0.89894 0.88128 0.89824 0.91259 0.74396 0.90916 0.92492 0.91574 0.91042 0.96762 0.97003 0.79250 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.90 71.98 0.64 -0.93 16 2 C -0.10 -1.31 3.17 -9.91 -0.03 -1.34 16 3 H 0.10 1.26 7.85 -2.39 -0.02 1.24 16 4 C 0.10 1.09 6.44 86.53 0.56 1.65 16 5 N -0.62 -11.83 3.30 -808.69 -2.67 -14.50 16 6 C 0.53 11.94 6.84 87.66 0.60 12.54 16 7 O -0.58 -19.25 16.66 -3.02 -0.05 -19.30 16 8 C -0.02 -0.25 2.55 -12.17 -0.03 -0.28 16 9 H 0.13 1.24 6.51 -2.39 -0.02 1.22 16 10 C -0.10 -1.26 5.22 30.77 0.16 -1.10 16 11 C -0.10 -0.97 5.90 30.75 0.18 -0.79 16 12 C -0.04 -0.61 6.30 30.02 0.19 -0.42 16 13 C -0.01 -0.24 6.98 41.62 0.29 0.05 16 14 N -0.53 -12.98 11.25 -187.75 -2.11 -15.09 16 15 C 0.18 3.45 13.05 180.06 2.35 5.80 16 16 N -0.55 -10.45 6.02 -186.30 -1.12 -11.57 16 17 H 0.43 6.73 8.96 -92.71 -0.83 5.90 16 18 C -0.02 -0.43 5.90 41.15 0.24 -0.18 16 19 C 0.11 2.58 5.93 86.68 0.51 3.10 16 20 C -0.08 -1.70 2.59 -9.58 -0.02 -1.73 16 21 H 0.08 1.77 7.86 -2.39 -0.02 1.75 16 22 C -0.10 -2.82 4.70 30.60 0.14 -2.68 16 23 C 0.15 5.92 6.15 86.38 0.53 6.45 16 24 N -0.75 -38.35 5.60 -343.45 -1.92 -40.28 16 25 C -0.25 -14.25 9.99 84.04 0.84 -13.41 16 26 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 27 C -0.07 -4.33 5.50 84.87 0.47 -3.86 16 28 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 29 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 30 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 31 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 32 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.62 6.21 -2.39 -0.01 0.60 16 37 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.93 8.08 -2.38 -0.02 0.91 16 40 H 0.08 0.58 8.11 -2.39 -0.02 0.56 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.24 2.50 8.06 -2.91 -0.02 2.47 16 45 H 0.07 1.81 7.94 -2.39 -0.02 1.80 16 46 H 0.06 1.69 7.89 -2.39 -0.02 1.67 16 47 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 48 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.01 0.49 7.67 -2.39 -0.02 0.47 16 51 H 0.38 20.13 7.67 -92.70 -0.71 19.42 16 52 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -80.64 411.27 1.44 -79.20 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.61 Total: 28.95 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 7.62 Total: 2.87 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -7.55 Total: -140.39 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -80.64 1.44 -79.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104665311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.807 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds