Wall clock time and date at job start Wed Apr 1 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.79802 * 2 1 4 4 C 1.54600 * 110.83455 * 236.85255 * 2 1 3 5 5 N 1.48112 * 103.42153 * 204.44737 * 4 2 1 6 6 C 1.34783 * 127.03269 * 219.28320 * 5 4 2 7 7 O 1.21276 * 120.00197 * 179.68344 * 6 5 4 8 8 C 1.50704 * 119.99785 * 359.68958 * 6 5 4 9 9 H 1.08994 * 115.56141 * 34.30299 * 8 6 5 10 10 C 1.52999 * 117.49483 * 248.62036 * 8 6 5 11 11 C 1.52999 * 117.49478 * 179.97438 * 8 6 5 12 12 H 1.08997 * 117.50178 * 359.97438 * 11 8 6 13 13 C 1.50703 * 117.49781 * 214.97301 * 11 8 6 14 14 C 1.34669 * 126.59045 * 324.96580 * 13 11 8 15 15 N 1.34128 * 108.01780 * 180.02562 * 14 13 11 16 16 C 1.30495 * 109.25774 * 359.72199 * 15 14 13 17 17 N 1.35045 * 108.69990 * 0.44365 * 16 15 14 18 18 C 1.46499 * 126.39849 * 179.82112 * 17 16 15 19 19 C 1.47480 * 105.93594 * 39.02369 * 5 4 2 20 20 C 1.54002 * 107.08214 * 334.77996 * 19 5 4 21 21 H 1.09006 * 110.32836 * 120.20059 * 20 19 5 22 22 C 1.53007 * 110.32667 * 242.40933 * 20 19 5 23 23 C 1.52996 * 109.47315 * 293.54987 * 22 20 19 24 24 N 1.46495 * 109.46981 * 179.97438 * 23 22 20 25 25 C 1.36942 * 120.00045 * 179.97438 * 24 23 22 26 26 H 1.07996 * 119.99709 * 0.02562 * 25 24 23 27 27 C 1.38812 * 120.00373 * 179.97438 * 25 24 23 28 28 N 1.31621 * 119.99782 * 0.02562 * 27 25 24 29 29 Si 1.86794 * 120.00206 * 180.02562 * 27 25 24 30 30 H 1.48504 * 109.47046 * 90.00523 * 29 27 25 31 31 H 1.48507 * 109.47147 * 210.00246 * 29 27 25 32 32 H 1.48499 * 109.47305 * 330.00111 * 29 27 25 33 33 H 1.08997 * 109.46890 * 296.70690 * 1 2 3 34 34 H 1.08997 * 109.46768 * 56.70958 * 1 2 3 35 35 H 1.09005 * 109.46829 * 176.70848 * 1 2 3 36 36 H 1.09000 * 110.61588 * 85.93423 * 4 2 1 37 37 H 1.08999 * 110.54404 * 322.92451 * 4 2 1 38 38 H 1.09000 * 117.49692 * 145.02518 * 10 8 6 39 39 H 1.08999 * 117.49709 * 359.97438 * 10 8 6 40 40 H 1.08000 * 125.99191 * 0.02748 * 14 13 11 41 41 H 1.07997 * 125.65170 * 180.29145 * 16 15 14 42 42 H 1.09002 * 109.47391 * 269.69091 * 18 17 16 43 43 H 1.09001 * 109.46813 * 149.69147 * 18 17 16 44 44 H 1.09004 * 109.47041 * 29.69274 * 18 17 16 45 45 H 1.08999 * 109.91802 * 94.13998 * 19 5 4 46 46 H 1.08999 * 109.91505 * 215.41626 * 19 5 4 47 47 H 1.09006 * 109.46657 * 53.54548 * 22 20 19 48 48 H 1.08994 * 109.47241 * 173.54161 * 22 20 19 49 49 H 1.08998 * 109.47205 * 299.99333 * 23 22 20 50 50 H 1.08997 * 109.47209 * 60.00036 * 23 22 20 51 51 H 0.96996 * 120.00514 * 359.97438 * 24 23 22 52 52 H 0.96998 * 120.00001 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0799 -0.7901 -1.2098 5 7 3.4279 -1.2099 -0.7622 6 6 4.5539 -1.2471 -1.5021 7 8 5.5971 -1.6095 -1.0010 8 6 4.5164 -0.8384 -2.9522 9 1 3.8219 -0.0347 -3.1965 10 6 4.7272 -1.9329 -4.0003 11 6 5.8276 -0.9021 -3.7381 12 1 6.7173 -1.2391 -3.2063 13 6 6.0596 0.1509 -4.7910 14 6 5.1273 0.7117 -5.5846 15 7 5.7403 1.5997 -6.3813 16 6 7.0161 1.6148 -6.1074 17 7 7.2586 0.7208 -5.1247 18 6 8.5606 0.4213 -4.5238 19 6 3.2875 -1.5728 0.6603 20 6 2.0775 -0.7937 1.2086 21 1 1.3210 -1.4835 1.5829 22 6 2.5199 0.1639 2.3170 23 6 3.0094 -0.6420 3.5219 24 7 3.4336 0.2749 4.5828 25 6 3.9124 -0.2215 5.7659 26 1 3.9777 -1.2888 5.9166 27 6 4.3148 0.6473 6.7710 28 7 4.2356 1.9482 6.5871 29 14 4.9685 -0.0298 8.3845 30 1 6.4402 -0.2042 8.2880 31 1 4.6534 0.9183 9.4832 32 1 4.3319 -1.3418 8.6650 33 1 -0.3633 0.4619 0.9180 34 1 -0.3633 0.5641 -0.8590 35 1 -0.3633 -1.0260 -0.0590 36 1 2.1488 -0.1482 -2.0881 37 1 1.4548 -1.6591 -1.4151 38 1 4.1713 -1.8492 -4.9342 39 1 4.8933 -2.9485 -3.6409 40 1 4.0711 0.4860 -5.5803 41 1 7.7559 2.2371 -6.5888 42 1 9.0380 -0.3885 -5.0758 43 1 8.4210 0.1203 -3.4856 44 1 9.1918 1.3092 -4.5631 45 1 3.1126 -2.6445 0.7546 46 1 4.1883 -1.2917 1.2059 47 1 3.3287 0.7958 1.9497 48 1 1.6778 0.7883 2.6153 49 1 2.2008 -1.2738 3.8892 50 1 3.8516 -1.2662 3.2236 51 1 3.3753 1.2336 4.4474 52 1 4.5165 2.5553 7.2896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104699561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:57 Heat of formation + Delta-G solvation = 60.580967 kcal Electronic energy + Delta-G solvation = -29949.964722 eV Core-core repulsion = 25951.463592 eV Total energy + Delta-G solvation = -3998.501130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46589 -40.43735 -38.64773 -36.61539 -35.11706 -34.35347 -33.22821 -32.09637 -30.28244 -29.70736 -27.48809 -27.33296 -26.53610 -24.98373 -23.73969 -23.38952 -22.44644 -21.71354 -20.68681 -20.10933 -19.76453 -19.10235 -17.92328 -17.11169 -16.93340 -16.39264 -16.03760 -15.77586 -14.94995 -14.87074 -14.65083 -14.43824 -14.30261 -13.89603 -13.74019 -13.54544 -13.35441 -13.29010 -13.13664 -13.08981 -12.92370 -12.73773 -12.48074 -12.22797 -12.00254 -11.85944 -11.47566 -11.38020 -11.13745 -11.00190 -10.98884 -10.82750 -10.54563 -10.41384 -10.30526 -10.27964 -9.97962 -9.94398 -9.87637 -9.64001 -8.84062 -8.77774 -8.56244 -6.88809 -5.73740 -3.02194 1.55164 2.32558 2.39916 2.75766 2.85566 3.45608 3.50301 3.52119 3.61843 3.98641 4.25556 4.33549 4.35826 4.38185 4.43235 4.56332 4.57107 4.67875 4.71273 4.75631 4.80927 4.93374 5.01988 5.12380 5.21195 5.24068 5.26985 5.29148 5.34835 5.50068 5.53351 5.55476 5.60721 5.65407 5.71755 5.79980 5.90077 5.99874 6.01404 6.05267 6.05653 6.15796 6.31865 6.37207 6.38984 6.45831 6.82817 6.87000 6.91750 7.42256 7.72657 7.74089 8.04136 8.45493 9.56241 10.15021 10.49313 11.49383 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002107 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.414134 B =13286.481948 C =14591.025725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.103 3.897 5 N -0.614 5.614 6 C 0.560 3.440 7 O -0.539 6.539 8 C -0.168 4.168 9 H 0.128 0.872 10 C -0.131 4.131 11 C -0.055 4.055 12 H 0.124 0.876 13 C 0.010 3.990 14 C -0.024 4.024 15 N -0.492 5.492 16 C 0.181 3.819 17 N -0.456 5.456 18 C 0.068 3.932 19 C 0.107 3.893 20 C -0.091 4.091 21 H 0.087 0.913 22 C -0.117 4.117 23 C 0.151 3.849 24 N -0.734 5.734 25 C -0.238 4.238 26 H 0.070 0.930 27 C -0.016 4.016 28 N -0.935 5.935 29 Si 0.907 3.093 30 H -0.290 1.290 31 H -0.291 1.291 32 H -0.282 1.282 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.206 0.794 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.018 0.982 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -5.508 -28.586 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.348 3.652 7 O -0.416 6.416 8 C -0.190 4.190 9 H 0.146 0.854 10 C -0.168 4.168 11 C -0.075 4.075 12 H 0.142 0.858 13 C -0.105 4.105 14 C -0.172 4.172 15 N -0.210 5.210 16 C -0.101 4.101 17 N -0.138 5.138 18 C -0.075 4.075 19 C -0.015 4.015 20 C -0.111 4.111 21 H 0.105 0.895 22 C -0.155 4.155 23 C 0.024 3.976 24 N -0.378 5.378 25 C -0.369 4.369 26 H 0.088 0.912 27 C -0.212 4.212 28 N -0.584 5.584 29 Si 0.738 3.262 30 H -0.217 1.217 31 H -0.218 1.218 32 H -0.208 1.208 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.185 0.815 41 H 0.223 0.777 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.036 0.964 50 H 0.036 0.964 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.545 -5.372 -28.771 29.273 hybrid contribution 0.813 -0.335 1.599 1.825 sum 0.268 -5.708 -27.171 27.766 Atomic orbital electron populations 1.21732 0.93692 1.02033 1.02350 1.22319 0.96208 0.99853 0.93983 0.89673 1.22619 0.82923 0.98651 0.97749 1.48677 1.08270 1.65798 1.11997 1.19139 0.82107 0.77481 0.86426 1.90726 1.29876 1.48130 1.72910 1.22344 1.01852 1.04045 0.90743 0.85373 1.23149 1.00107 0.94778 0.98815 1.20129 0.94236 0.96665 0.96431 0.85776 1.20246 0.85871 1.01994 1.02400 1.21978 0.99378 0.98728 0.97152 1.70285 1.04531 1.20759 1.25425 1.24954 0.95292 0.96711 0.93152 1.45228 1.07854 1.31096 1.29633 1.22124 0.82058 1.03160 1.00154 1.22263 1.00032 0.98857 0.80345 1.22158 0.96445 0.97434 0.95045 0.89467 1.21793 1.01081 0.97798 0.94803 1.20701 0.96157 0.92903 0.87874 1.42367 1.77100 1.05053 1.13287 1.19243 1.34144 0.91980 0.91527 0.91203 1.24752 1.02410 0.95331 0.98695 1.69664 1.54049 1.00837 1.33812 0.86179 0.78759 0.77675 0.83538 1.21728 1.21769 1.20757 0.91731 0.92504 0.92381 0.90243 0.90652 0.87062 0.87443 0.81521 0.77732 0.90266 0.89182 0.89142 0.91582 0.89527 0.91909 0.91485 0.96434 0.96358 0.78353 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.16 37.16 0.34 -0.74 16 2 C -0.10 -0.99 3.19 -88.93 -0.28 -1.27 16 3 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 4 C 0.10 0.87 6.38 -2.31 -0.01 0.85 16 5 N -0.61 -7.23 3.29 -169.99 -0.56 -7.79 16 6 C 0.56 7.23 7.67 -10.98 -0.08 7.15 16 7 O -0.54 -9.14 16.59 5.56 0.09 -9.04 16 8 C -0.17 -1.54 5.08 -91.77 -0.47 -2.01 16 9 H 0.13 0.99 6.83 -51.93 -0.35 0.64 16 10 C -0.13 -0.94 9.76 -26.71 -0.26 -1.20 16 11 C -0.05 -0.50 5.53 -91.74 -0.51 -1.00 16 12 H 0.12 1.25 6.93 -51.93 -0.36 0.89 16 13 C 0.01 0.09 6.63 -81.60 -0.54 -0.45 16 14 C -0.02 -0.24 10.94 -17.81 -0.19 -0.44 16 15 N -0.49 -5.56 11.25 -14.67 -0.17 -5.73 16 16 C 0.18 1.56 12.56 -90.38 -1.14 0.43 16 17 N -0.46 -3.81 3.15 -121.36 -0.38 -4.19 16 18 C 0.07 0.34 10.96 59.85 0.66 1.00 16 19 C 0.11 1.41 6.16 -2.98 -0.02 1.39 16 20 C -0.09 -1.09 2.61 -89.25 -0.23 -1.32 16 21 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 22 C -0.12 -1.85 4.53 -26.73 -0.12 -1.97 16 23 C 0.15 3.07 6.08 -4.05 -0.02 3.05 16 24 N -0.73 -19.21 5.60 -59.92 -0.34 -19.55 16 25 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 26 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 27 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 28 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 29 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 31 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 32 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 36 H 0.08 0.53 6.71 -51.93 -0.35 0.18 16 37 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 38 H 0.11 0.60 7.95 -51.93 -0.41 0.19 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.52 7.38 -51.93 -0.38 0.14 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.41 6.64 -51.93 -0.34 1.07 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 51 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 52 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 420.89 15.07 6.34 6.34 Total: -1.00 -37.10 420.89 -11.17 -48.26 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.72 Total: 6.15 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.14 Total: -4.13 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.72 Total: -65.47 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -37.10 -11.17 -48.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104699561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.844 kcal (2) G-P(sol) polarization free energy of solvation -37.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds