Wall clock time and date at job start Wed Apr 1 2020 04:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.79802 * 2 1 4 4 C 1.54600 * 110.83455 * 236.85255 * 2 1 3 5 5 N 1.48112 * 103.42153 * 204.44737 * 4 2 1 6 6 C 1.34783 * 127.03269 * 219.28320 * 5 4 2 7 7 O 1.21276 * 120.00197 * 179.68344 * 6 5 4 8 8 C 1.50704 * 119.99785 * 359.68958 * 6 5 4 9 9 H 1.08994 * 115.56141 * 34.30299 * 8 6 5 10 10 C 1.52999 * 117.49483 * 248.62036 * 8 6 5 11 11 C 1.52999 * 117.49478 * 179.97438 * 8 6 5 12 12 H 1.08997 * 117.50178 * 359.97438 * 11 8 6 13 13 C 1.50703 * 117.49781 * 214.97301 * 11 8 6 14 14 C 1.34669 * 126.59045 * 324.96580 * 13 11 8 15 15 N 1.34128 * 108.01780 * 180.02562 * 14 13 11 16 16 C 1.30495 * 109.25774 * 359.72199 * 15 14 13 17 17 N 1.35045 * 108.69990 * 0.44365 * 16 15 14 18 18 C 1.46499 * 126.39849 * 179.82112 * 17 16 15 19 19 C 1.47480 * 105.93594 * 39.02369 * 5 4 2 20 20 C 1.54002 * 107.08214 * 334.77996 * 19 5 4 21 21 H 1.09006 * 110.32836 * 120.20059 * 20 19 5 22 22 C 1.53007 * 110.32667 * 242.40933 * 20 19 5 23 23 C 1.52996 * 109.47315 * 293.54987 * 22 20 19 24 24 N 1.46495 * 109.46981 * 179.97438 * 23 22 20 25 25 C 1.36942 * 120.00045 * 179.97438 * 24 23 22 26 26 H 1.07996 * 119.99709 * 0.02562 * 25 24 23 27 27 C 1.38812 * 120.00373 * 179.97438 * 25 24 23 28 28 N 1.31621 * 119.99782 * 0.02562 * 27 25 24 29 29 Si 1.86794 * 120.00206 * 180.02562 * 27 25 24 30 30 H 1.48504 * 109.47046 * 90.00523 * 29 27 25 31 31 H 1.48507 * 109.47147 * 210.00246 * 29 27 25 32 32 H 1.48499 * 109.47305 * 330.00111 * 29 27 25 33 33 H 1.08997 * 109.46890 * 296.70690 * 1 2 3 34 34 H 1.08997 * 109.46768 * 56.70958 * 1 2 3 35 35 H 1.09005 * 109.46829 * 176.70848 * 1 2 3 36 36 H 1.09000 * 110.61588 * 85.93423 * 4 2 1 37 37 H 1.08999 * 110.54404 * 322.92451 * 4 2 1 38 38 H 1.09000 * 117.49692 * 145.02518 * 10 8 6 39 39 H 1.08999 * 117.49709 * 359.97438 * 10 8 6 40 40 H 1.08000 * 125.99191 * 0.02748 * 14 13 11 41 41 H 1.07997 * 125.65170 * 180.29145 * 16 15 14 42 42 H 1.09002 * 109.47391 * 269.69091 * 18 17 16 43 43 H 1.09001 * 109.46813 * 149.69147 * 18 17 16 44 44 H 1.09004 * 109.47041 * 29.69274 * 18 17 16 45 45 H 1.08999 * 109.91802 * 94.13998 * 19 5 4 46 46 H 1.08999 * 109.91505 * 215.41626 * 19 5 4 47 47 H 1.09006 * 109.46657 * 53.54548 * 22 20 19 48 48 H 1.08994 * 109.47241 * 173.54161 * 22 20 19 49 49 H 1.08998 * 109.47205 * 299.99333 * 23 22 20 50 50 H 1.08997 * 109.47209 * 60.00036 * 23 22 20 51 51 H 0.96996 * 120.00514 * 359.97438 * 24 23 22 52 52 H 0.96998 * 120.00001 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0799 -0.7901 -1.2098 5 7 3.4279 -1.2099 -0.7622 6 6 4.5539 -1.2471 -1.5021 7 8 5.5971 -1.6095 -1.0010 8 6 4.5164 -0.8384 -2.9522 9 1 3.8219 -0.0347 -3.1965 10 6 4.7272 -1.9329 -4.0003 11 6 5.8276 -0.9021 -3.7381 12 1 6.7173 -1.2391 -3.2063 13 6 6.0596 0.1509 -4.7910 14 6 5.1273 0.7117 -5.5846 15 7 5.7403 1.5997 -6.3813 16 6 7.0161 1.6148 -6.1074 17 7 7.2586 0.7208 -5.1247 18 6 8.5606 0.4213 -4.5238 19 6 3.2875 -1.5728 0.6603 20 6 2.0775 -0.7937 1.2086 21 1 1.3210 -1.4835 1.5829 22 6 2.5199 0.1639 2.3170 23 6 3.0094 -0.6420 3.5219 24 7 3.4336 0.2749 4.5828 25 6 3.9124 -0.2215 5.7659 26 1 3.9777 -1.2888 5.9166 27 6 4.3148 0.6473 6.7710 28 7 4.2356 1.9482 6.5871 29 14 4.9685 -0.0298 8.3845 30 1 6.4402 -0.2042 8.2880 31 1 4.6534 0.9183 9.4832 32 1 4.3319 -1.3418 8.6650 33 1 -0.3633 0.4619 0.9180 34 1 -0.3633 0.5641 -0.8590 35 1 -0.3633 -1.0260 -0.0590 36 1 2.1488 -0.1482 -2.0881 37 1 1.4548 -1.6591 -1.4151 38 1 4.1713 -1.8492 -4.9342 39 1 4.8933 -2.9485 -3.6409 40 1 4.0711 0.4860 -5.5803 41 1 7.7559 2.2371 -6.5888 42 1 9.0380 -0.3885 -5.0758 43 1 8.4210 0.1203 -3.4856 44 1 9.1918 1.3092 -4.5631 45 1 3.1126 -2.6445 0.7546 46 1 4.1883 -1.2917 1.2059 47 1 3.3287 0.7958 1.9497 48 1 1.6778 0.7883 2.6153 49 1 2.2008 -1.2738 3.8892 50 1 3.8516 -1.2662 3.2236 51 1 3.3753 1.2336 4.4474 52 1 4.5165 2.5553 7.2896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104699561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:56 Heat of formation + Delta-G solvation = 38.317528 kcal Electronic energy + Delta-G solvation = -29950.930137 eV Core-core repulsion = 25951.463592 eV Total energy + Delta-G solvation = -3999.466545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.10430 -41.37627 -39.58267 -37.47550 -36.87917 -34.94036 -34.59591 -33.46800 -31.84708 -30.44967 -28.83428 -27.84337 -27.28937 -26.40078 -24.86495 -24.29988 -23.79929 -22.34963 -21.95809 -20.94942 -20.58660 -19.96577 -19.18809 -18.63730 -17.73478 -17.35501 -16.74142 -16.67512 -16.61545 -15.88065 -15.60279 -15.53574 -15.42549 -15.09864 -15.02249 -14.54436 -14.42642 -14.35208 -13.95040 -13.82064 -13.69233 -13.55283 -13.47813 -13.16777 -12.95108 -12.88212 -12.82121 -12.71635 -12.46225 -12.33083 -12.13541 -12.05404 -11.91820 -11.72103 -11.61697 -11.48356 -11.24005 -10.98643 -10.97549 -10.95878 -10.49863 -9.75140 -9.22729 -9.04537 -7.99282 -5.28868 0.90260 1.43421 1.43703 1.46436 1.54878 1.76435 1.96837 2.14821 2.52722 2.91055 3.27454 3.34068 3.51536 3.56653 3.62432 3.65305 3.79897 3.87681 3.91497 4.03641 4.07400 4.13744 4.27517 4.30144 4.33632 4.36811 4.42203 4.48726 4.58183 4.62007 4.66549 4.68552 4.73784 4.74682 4.76229 4.88440 4.91065 4.96743 5.00759 5.05372 5.16131 5.23424 5.29048 5.34657 5.41525 5.41576 5.45480 5.58235 5.73022 6.23445 6.25663 6.50694 7.06428 7.08962 7.28764 8.04957 8.27928 9.24553 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002107 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.414134 B =13286.481948 C =14591.025725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.073 0.927 4 C 0.105 3.895 5 N -0.615 5.615 6 C 0.551 3.449 7 O -0.593 6.593 8 C -0.168 4.168 9 H 0.148 0.852 10 C -0.105 4.105 11 C -0.062 4.062 12 H 0.106 0.894 13 C -0.001 4.001 14 C -0.036 4.036 15 N -0.532 5.532 16 C 0.181 3.819 17 N -0.461 5.461 18 C 0.064 3.936 19 C 0.106 3.894 20 C -0.082 4.082 21 H 0.105 0.895 22 C -0.102 4.102 23 C 0.150 3.850 24 N -0.750 5.750 25 C -0.249 4.249 26 H 0.075 0.925 27 C -0.079 4.079 28 N -0.971 5.971 29 Si 0.977 3.023 30 H -0.288 1.288 31 H -0.291 1.291 32 H -0.267 1.267 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.183 0.817 41 H 0.238 0.762 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.026 0.974 50 H 0.011 0.989 51 H 0.373 0.627 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -6.415 -30.417 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.016 4.016 5 N -0.347 5.347 6 C 0.341 3.659 7 O -0.474 6.474 8 C -0.189 4.189 9 H 0.166 0.834 10 C -0.142 4.142 11 C -0.083 4.083 12 H 0.125 0.875 13 C -0.116 4.116 14 C -0.184 4.184 15 N -0.250 5.250 16 C -0.101 4.101 17 N -0.142 5.142 18 C -0.078 4.078 19 C -0.017 4.017 20 C -0.101 4.101 21 H 0.123 0.877 22 C -0.140 4.140 23 C 0.024 3.976 24 N -0.392 5.392 25 C -0.380 4.380 26 H 0.093 0.907 27 C -0.271 4.271 28 N -0.622 5.622 29 Si 0.805 3.195 30 H -0.215 1.215 31 H -0.218 1.218 32 H -0.192 1.192 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.200 0.800 41 H 0.254 0.746 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.029 0.971 51 H 0.204 0.796 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.913 -6.313 -30.628 31.330 hybrid contribution 1.268 -0.070 2.150 2.497 sum -0.644 -6.383 -28.478 29.191 Atomic orbital electron populations 1.21708 0.91717 1.03205 1.02674 1.22287 0.97679 0.98873 0.92956 0.90892 1.22882 0.80990 0.99902 0.97860 1.48809 1.09542 1.65066 1.11275 1.19853 0.81515 0.76618 0.87874 1.90695 1.31837 1.50627 1.74240 1.22297 1.02506 1.05621 0.88447 0.83439 1.23255 0.98354 0.93929 0.98708 1.20049 0.93922 0.97713 0.96566 0.87547 1.20331 0.86477 1.02306 1.02524 1.22301 1.00301 0.98684 0.97103 1.70272 1.05929 1.22022 1.26774 1.25607 0.95343 0.96394 0.92747 1.45468 1.08523 1.30727 1.29528 1.22316 0.81195 1.04826 0.99452 1.22154 0.98653 0.99535 0.81325 1.22090 0.96251 0.97037 0.94753 0.87733 1.21628 1.00270 0.97842 0.94253 1.20883 0.95949 0.92689 0.88129 1.42627 1.77236 1.05315 1.14029 1.19660 1.33505 0.92330 0.92546 0.90740 1.25642 1.03340 0.95682 1.02394 1.69824 1.55448 1.02068 1.34812 0.85094 0.77931 0.77482 0.78995 1.21503 1.21773 1.19194 0.92804 0.90667 0.90962 0.87777 0.88107 0.84449 0.87550 0.79968 0.74622 0.88798 0.90421 0.86890 0.90691 0.93673 0.93861 0.91212 0.95557 0.97076 0.79591 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.16 71.98 0.66 -0.99 16 2 C -0.10 -1.65 3.19 -9.70 -0.03 -1.68 16 3 H 0.07 1.43 7.86 -2.39 -0.02 1.41 16 4 C 0.10 1.44 6.38 86.61 0.55 1.99 16 5 N -0.62 -13.98 3.29 -810.10 -2.67 -16.65 16 6 C 0.55 14.26 7.67 87.66 0.67 14.94 16 7 O -0.59 -21.15 16.59 -3.02 -0.05 -21.20 16 8 C -0.17 -2.84 5.08 -11.54 -0.06 -2.90 16 9 H 0.15 1.90 6.83 -2.39 -0.02 1.89 16 10 C -0.10 -1.31 9.76 30.61 0.30 -1.01 16 11 C -0.06 -1.10 5.53 -11.52 -0.06 -1.17 16 12 H 0.11 2.26 6.93 -2.39 -0.02 2.25 16 13 C 0.00 -0.02 6.63 40.95 0.27 0.25 16 14 C -0.04 -0.68 10.94 83.52 0.91 0.23 16 15 N -0.53 -11.43 11.25 -200.32 -2.25 -13.68 16 16 C 0.18 2.88 12.56 180.26 2.26 5.14 16 17 N -0.46 -7.25 3.15 -537.88 -1.70 -8.95 16 18 C 0.06 0.60 10.96 127.77 1.40 2.00 16 19 C 0.11 2.81 6.16 86.53 0.53 3.35 16 20 C -0.08 -1.88 2.61 -9.90 -0.03 -1.91 16 21 H 0.10 2.09 7.85 -2.38 -0.02 2.07 16 22 C -0.10 -3.29 4.53 30.60 0.14 -3.15 16 23 C 0.15 6.22 6.08 86.38 0.53 6.75 16 24 N -0.75 -40.31 5.60 -343.47 -1.92 -42.24 16 25 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 26 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 27 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 28 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 29 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 31 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 32 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.70 8.10 -2.38 -0.02 0.68 16 36 H 0.10 0.98 6.71 -2.39 -0.02 0.96 16 37 H 0.10 0.96 8.01 -2.39 -0.02 0.95 16 38 H 0.14 1.03 7.95 -2.39 -0.02 1.01 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.24 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 0.94 7.38 -2.39 -0.02 0.92 16 44 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.57 6.64 -2.39 -0.02 1.55 16 47 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.01 0.49 6.88 -2.39 -0.02 0.47 16 51 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 52 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -83.59 420.89 3.28 -80.31 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.20 Total: 30.05 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 9.36 Total: 3.90 kcal Atomic # 7 Polarization: -134.36 SS G_CDS: -8.26 Total: -142.62 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -83.59 3.28 -80.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104699561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.629 kcal (2) G-P(sol) polarization free energy of solvation -83.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds