Wall clock time and date at job start Wed Apr 1 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.30582 * 2 1 4 4 C 1.54388 * 110.34480 * 237.83110 * 2 1 3 5 5 N 1.48307 * 104.53847 * 217.33422 * 4 2 1 6 6 C 1.34779 * 127.77498 * 219.50945 * 5 4 2 7 7 O 1.21274 * 120.00463 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99317 * 359.93961 * 6 5 4 9 9 H 1.08996 * 115.55719 * 34.32457 * 8 6 5 10 10 C 1.53004 * 117.49612 * 248.61663 * 8 6 5 11 11 C 1.52998 * 60.00155 * 252.51240 * 10 8 6 12 12 H 1.08999 * 117.49883 * 107.48721 * 11 10 8 13 13 C 1.50695 * 117.49898 * 252.50969 * 11 10 8 14 14 C 1.39871 * 126.04018 * 8.31405 * 13 11 10 15 15 N 1.30841 * 108.20346 * 179.81428 * 14 13 11 16 16 N 1.40078 * 108.20176 * 0.43947 * 15 14 13 17 17 C 1.46502 * 126.03485 * 179.69541 * 16 15 14 18 18 C 1.34948 * 107.93106 * 359.71813 * 16 15 14 19 19 C 1.48147 * 104.39337 * 39.46011 * 5 4 2 20 20 C 1.54288 * 110.34638 * 122.18019 * 2 1 3 21 21 H 1.08995 * 110.33924 * 359.97438 * 20 2 1 22 22 C 1.53003 * 110.34055 * 237.74483 * 20 2 1 23 23 C 1.53004 * 109.46918 * 174.99707 * 22 20 2 24 24 N 1.46500 * 109.47070 * 179.97438 * 23 22 20 25 25 C 1.36932 * 119.99774 * 180.02562 * 24 23 22 26 26 H 1.08002 * 120.00394 * 0.02562 * 25 24 23 27 27 C 1.38818 * 119.99972 * 180.02562 * 25 24 23 28 28 N 1.31625 * 119.99658 * 359.97438 * 27 25 24 29 29 Si 1.86797 * 119.99982 * 180.02562 * 27 25 24 30 30 H 1.48494 * 109.47159 * 59.99779 * 29 27 25 31 31 H 1.48506 * 109.46666 * 179.97438 * 29 27 25 32 32 H 1.48503 * 109.46896 * 299.99564 * 29 27 25 33 33 H 1.09002 * 109.47153 * 299.29454 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.29644 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.29626 * 1 2 3 36 36 H 1.09006 * 110.40381 * 336.04053 * 4 2 1 37 37 H 1.08995 * 110.41172 * 98.47211 * 4 2 1 38 38 H 1.09003 * 117.49790 * 0.02562 * 10 8 6 39 39 H 1.08991 * 117.49895 * 145.01867 * 10 8 6 40 40 H 1.08002 * 125.89974 * 359.97438 * 14 13 11 41 41 H 1.09006 * 109.47338 * 270.02908 * 17 16 15 42 42 H 1.08999 * 109.47575 * 30.02676 * 17 16 15 43 43 H 1.09000 * 109.47283 * 150.02946 * 17 16 15 44 44 H 1.08002 * 126.12716 * 180.02562 * 18 16 15 45 45 H 1.09001 * 110.40685 * 201.68854 * 19 5 4 46 46 H 1.09002 * 110.50768 * 79.30904 * 19 5 4 47 47 H 1.09006 * 109.46964 * 294.99267 * 22 20 2 48 48 H 1.08996 * 109.47449 * 54.99603 * 22 20 2 49 49 H 1.09000 * 109.46848 * 300.00015 * 23 22 20 50 50 H 1.09004 * 109.46802 * 59.99724 * 23 22 20 51 51 H 0.96999 * 119.99672 * 0.02562 * 24 23 22 52 52 H 0.96994 * 119.99449 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7707 -1.2253 5 7 3.2664 -1.4822 -0.7214 6 6 4.4424 -1.6677 -1.3531 7 8 5.3364 -2.2762 -0.8042 8 6 4.6462 -1.1195 -2.7420 9 1 4.1453 -0.1746 -2.9528 10 6 4.7678 -2.1260 -3.8880 11 6 6.0031 -1.3631 -3.4057 12 1 6.7484 -1.9198 -2.8376 13 6 6.5446 -0.2785 -4.3009 14 6 5.9344 0.2132 -5.4595 15 7 6.7010 1.1480 -5.9599 16 7 7.8297 1.2738 -5.1399 17 6 8.9440 2.2029 -5.3438 18 6 7.7098 0.3877 -4.1291 19 6 2.8802 -1.9416 0.6331 20 6 2.0664 -0.7704 1.2244 21 1 1.2399 -1.1485 1.8260 22 6 2.9692 0.1326 2.0673 23 6 3.3889 -0.6090 3.3380 24 7 4.2538 0.2554 4.1448 25 6 4.7559 -0.1979 5.3354 26 1 4.5147 -1.1928 5.6795 27 6 5.5751 0.6213 6.1001 28 7 5.8695 1.8337 5.6806 29 14 6.2606 0.0027 7.7239 30 1 7.0873 -1.2072 7.4834 31 1 7.1001 1.0604 8.3418 32 1 5.1399 -0.3370 8.6371 33 1 -0.3633 0.5028 0.8963 34 1 -0.3633 -1.0276 -0.0126 35 1 -0.3634 0.5247 -0.8836 36 1 1.3235 -1.4844 -1.5808 37 1 2.3400 -0.0774 -2.0207 38 1 4.6999 -3.1847 -3.6373 39 1 4.3466 -1.8435 -4.8527 40 1 4.9919 -0.1193 -5.8688 41 1 9.7078 1.7251 -5.9575 42 1 8.5821 3.0994 -5.8471 43 1 9.3712 2.4753 -4.3788 44 1 8.4169 0.2376 -3.3267 45 1 3.7673 -2.1313 1.2374 46 1 2.2646 -2.8390 0.5709 47 1 3.8562 0.3984 1.4920 48 1 2.4266 1.0384 2.3377 49 1 2.5020 -0.8749 3.9132 50 1 3.9316 -1.5149 3.0675 51 1 4.4708 1.1488 3.8356 52 1 6.4421 2.4059 6.2148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104706611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:02 Heat of formation + Delta-G solvation = 78.463064 kcal Electronic energy + Delta-G solvation = -29982.749743 eV Core-core repulsion = 25985.024039 eV Total energy + Delta-G solvation = -3997.725704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.54324 -40.25180 -38.50056 -36.45014 -35.01763 -33.31444 -33.04023 -32.06160 -30.47327 -30.08798 -27.59957 -26.95180 -26.46695 -24.86448 -23.32715 -23.19239 -22.43108 -21.27538 -20.62925 -20.10874 -19.67776 -19.00832 -17.60648 -17.01966 -16.82745 -16.06634 -15.80254 -15.64353 -14.80638 -14.68042 -14.59892 -14.48893 -14.17625 -13.77158 -13.55272 -13.34748 -13.28771 -13.12947 -13.06038 -12.85809 -12.78195 -12.59108 -12.25061 -12.12229 -11.98459 -11.84361 -11.30316 -11.17085 -11.06424 -10.94343 -10.80943 -10.77682 -10.64597 -10.49289 -10.36894 -10.26293 -9.91698 -9.77374 -9.69820 -9.59860 -8.79695 -8.68585 -8.49558 -6.84757 -5.70158 -2.98253 1.59342 2.22699 2.31161 2.63997 2.94887 3.48585 3.52188 3.53730 3.81140 4.14396 4.35616 4.46766 4.56931 4.61959 4.65729 4.69412 4.74152 4.77097 4.80153 4.89994 5.00885 5.05753 5.15260 5.18284 5.26648 5.31740 5.37312 5.39526 5.45796 5.55916 5.59165 5.64007 5.71020 5.76797 5.81086 5.86042 5.95405 6.01139 6.06467 6.11769 6.13018 6.17687 6.34294 6.36951 6.45204 6.53602 6.69768 6.92755 6.98111 7.40262 7.59007 7.75394 8.23090 8.49131 9.59713 10.19018 10.53470 11.53019 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.002472 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.971978 B =11322.331910 C =13430.244243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.107 3.893 5 N -0.617 5.617 6 C 0.563 3.437 7 O -0.536 6.536 8 C -0.179 4.179 9 H 0.122 0.878 10 C -0.143 4.143 11 C -0.037 4.037 12 H 0.124 0.876 13 C -0.209 4.209 14 C 0.054 3.946 15 N -0.299 5.299 16 N -0.377 5.377 17 C 0.101 3.899 18 C 0.069 3.931 19 C 0.105 3.895 20 C -0.093 4.093 21 H 0.088 0.912 22 C -0.116 4.116 23 C 0.152 3.848 24 N -0.733 5.733 25 C -0.237 4.237 26 H 0.069 0.931 27 C -0.016 4.016 28 N -0.936 5.936 29 Si 0.907 3.093 30 H -0.286 1.286 31 H -0.291 1.291 32 H -0.286 1.286 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.181 0.819 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.177 0.823 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -3.281 -26.511 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.101 0.899 4 C -0.017 4.017 5 N -0.351 5.351 6 C 0.352 3.648 7 O -0.413 6.413 8 C -0.200 4.200 9 H 0.139 0.861 10 C -0.181 4.181 11 C -0.057 4.057 12 H 0.142 0.858 13 C -0.220 4.220 14 C -0.133 4.133 15 N -0.120 5.120 16 N -0.158 5.158 17 C -0.040 4.040 18 C -0.077 4.077 19 C -0.017 4.017 20 C -0.113 4.113 21 H 0.106 0.894 22 C -0.154 4.154 23 C 0.025 3.975 24 N -0.377 5.377 25 C -0.368 4.368 26 H 0.087 0.913 27 C -0.212 4.212 28 N -0.584 5.584 29 Si 0.738 3.262 30 H -0.213 1.213 31 H -0.217 1.217 32 H -0.213 1.213 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.198 0.802 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.194 0.806 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.395 -2.752 -27.092 27.584 hybrid contribution 0.310 -0.392 1.575 1.652 sum -4.085 -3.144 -25.517 26.033 Atomic orbital electron populations 1.21814 0.94049 1.01944 1.02079 1.22208 0.96013 1.00063 0.94201 0.89853 1.22527 0.86880 0.95400 0.96859 1.48883 1.12776 1.55801 1.17648 1.19226 0.80286 0.79231 0.86095 1.90730 1.41138 1.42107 1.67338 1.22298 1.04079 1.02007 0.91598 0.86055 1.23014 1.01035 0.97348 0.96683 1.20199 0.90285 0.96928 0.98283 0.85827 1.19254 0.97707 1.04927 1.00138 1.23722 0.99791 0.94883 0.94859 1.77349 0.95928 1.21253 1.17487 1.48451 1.17407 1.30142 1.19846 1.21886 0.85970 0.92503 1.03666 1.22353 0.99265 0.92329 0.93758 1.22516 1.00077 0.96239 0.82855 1.22176 0.98151 0.95381 0.95547 0.89424 1.21767 0.98764 0.98256 0.96605 1.20702 0.93322 0.93555 0.89965 1.42352 1.57457 1.15882 1.22035 1.19206 1.23053 0.98466 0.96097 0.91268 1.24743 1.00889 0.96348 0.99197 1.69658 1.41576 1.08054 1.39159 0.86257 0.78680 0.77499 0.83723 1.21265 1.21707 1.21289 0.91962 0.92447 0.92623 0.90977 0.90482 0.87970 0.87805 0.80185 0.90694 0.89264 0.89222 0.80564 0.88948 0.91439 0.92036 0.91759 0.96517 0.96338 0.78391 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.91 37.16 0.33 -0.77 16 2 C -0.11 -1.04 3.30 -89.22 -0.29 -1.33 16 3 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 4 C 0.11 0.97 6.47 -2.32 -0.02 0.95 16 5 N -0.62 -7.79 3.32 -169.17 -0.56 -8.35 16 6 C 0.56 7.99 7.70 -10.98 -0.08 7.91 16 7 O -0.54 -9.90 16.52 5.56 0.09 -9.80 16 8 C -0.18 -1.87 5.29 -91.76 -0.49 -2.35 16 9 H 0.12 1.13 7.06 -51.93 -0.37 0.76 16 10 C -0.14 -1.18 9.73 -26.73 -0.26 -1.44 16 11 C -0.04 -0.38 5.76 -91.77 -0.53 -0.91 16 12 H 0.12 1.44 7.67 -51.93 -0.40 1.04 16 13 C -0.21 -2.09 5.76 -105.05 -0.61 -2.70 16 14 C 0.05 0.52 11.35 -17.36 -0.20 0.32 16 15 N -0.30 -3.34 12.58 30.63 0.39 -2.96 16 16 N -0.38 -3.59 4.01 -68.16 -0.27 -3.87 16 17 C 0.10 0.56 11.47 59.85 0.69 1.24 16 18 C 0.07 0.66 11.40 -17.22 -0.20 0.46 16 19 C 0.11 1.41 6.45 -2.41 -0.02 1.39 16 20 C -0.09 -1.16 2.71 -89.22 -0.24 -1.40 16 21 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 22 C -0.12 -1.93 4.54 -26.73 -0.12 -2.05 16 23 C 0.15 3.19 6.11 -4.04 -0.02 3.17 16 24 N -0.73 -19.63 5.60 -59.90 -0.34 -19.97 16 25 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 26 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 27 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 28 N -0.94 -29.27 13.06 55.49 0.72 -28.54 16 29 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 32 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16 37 H 0.08 0.60 6.78 -51.93 -0.35 0.24 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.62 6.97 -51.93 -0.36 0.26 16 40 H 0.18 1.21 7.19 -52.49 -0.38 0.84 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 45 H 0.09 1.54 6.14 -51.93 -0.32 1.22 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.41 6.66 -51.93 -0.35 0.06 16 51 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 52 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 421.58 15.07 6.35 6.35 Total: -1.00 -37.35 421.58 -9.60 -46.95 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.66 Total: 7.24 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.30 Total: -5.18 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.06 Total: -63.68 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -37.35 -9.60 -46.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104706611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.411 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds