Wall clock time and date at job start Wed Apr 1 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.30582 * 2 1 4 4 C 1.54388 * 110.34480 * 237.83110 * 2 1 3 5 5 N 1.48307 * 104.53847 * 217.33422 * 4 2 1 6 6 C 1.34779 * 127.77498 * 219.50945 * 5 4 2 7 7 O 1.21274 * 120.00463 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99317 * 359.93961 * 6 5 4 9 9 H 1.08996 * 115.55719 * 34.32457 * 8 6 5 10 10 C 1.53004 * 117.49612 * 248.61663 * 8 6 5 11 11 C 1.52998 * 60.00155 * 252.51240 * 10 8 6 12 12 H 1.08999 * 117.49883 * 107.48721 * 11 10 8 13 13 C 1.50695 * 117.49898 * 252.50969 * 11 10 8 14 14 C 1.39871 * 126.04018 * 8.31405 * 13 11 10 15 15 N 1.30841 * 108.20346 * 179.81428 * 14 13 11 16 16 N 1.40078 * 108.20176 * 0.43947 * 15 14 13 17 17 C 1.46502 * 126.03485 * 179.69541 * 16 15 14 18 18 C 1.34948 * 107.93106 * 359.71813 * 16 15 14 19 19 C 1.48147 * 104.39337 * 39.46011 * 5 4 2 20 20 C 1.54288 * 110.34638 * 122.18019 * 2 1 3 21 21 H 1.08995 * 110.33924 * 359.97438 * 20 2 1 22 22 C 1.53003 * 110.34055 * 237.74483 * 20 2 1 23 23 C 1.53004 * 109.46918 * 174.99707 * 22 20 2 24 24 N 1.46500 * 109.47070 * 179.97438 * 23 22 20 25 25 C 1.36932 * 119.99774 * 180.02562 * 24 23 22 26 26 H 1.08002 * 120.00394 * 0.02562 * 25 24 23 27 27 C 1.38818 * 119.99972 * 180.02562 * 25 24 23 28 28 N 1.31625 * 119.99658 * 359.97438 * 27 25 24 29 29 Si 1.86797 * 119.99982 * 180.02562 * 27 25 24 30 30 H 1.48494 * 109.47159 * 59.99779 * 29 27 25 31 31 H 1.48506 * 109.46666 * 179.97438 * 29 27 25 32 32 H 1.48503 * 109.46896 * 299.99564 * 29 27 25 33 33 H 1.09002 * 109.47153 * 299.29454 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.29644 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.29626 * 1 2 3 36 36 H 1.09006 * 110.40381 * 336.04053 * 4 2 1 37 37 H 1.08995 * 110.41172 * 98.47211 * 4 2 1 38 38 H 1.09003 * 117.49790 * 0.02562 * 10 8 6 39 39 H 1.08991 * 117.49895 * 145.01867 * 10 8 6 40 40 H 1.08002 * 125.89974 * 359.97438 * 14 13 11 41 41 H 1.09006 * 109.47338 * 270.02908 * 17 16 15 42 42 H 1.08999 * 109.47575 * 30.02676 * 17 16 15 43 43 H 1.09000 * 109.47283 * 150.02946 * 17 16 15 44 44 H 1.08002 * 126.12716 * 180.02562 * 18 16 15 45 45 H 1.09001 * 110.40685 * 201.68854 * 19 5 4 46 46 H 1.09002 * 110.50768 * 79.30904 * 19 5 4 47 47 H 1.09006 * 109.46964 * 294.99267 * 22 20 2 48 48 H 1.08996 * 109.47449 * 54.99603 * 22 20 2 49 49 H 1.09000 * 109.46848 * 300.00015 * 23 22 20 50 50 H 1.09004 * 109.46802 * 59.99724 * 23 22 20 51 51 H 0.96999 * 119.99672 * 0.02562 * 24 23 22 52 52 H 0.96994 * 119.99449 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7707 -1.2253 5 7 3.2664 -1.4822 -0.7214 6 6 4.4424 -1.6677 -1.3531 7 8 5.3364 -2.2762 -0.8042 8 6 4.6462 -1.1195 -2.7420 9 1 4.1453 -0.1746 -2.9528 10 6 4.7678 -2.1260 -3.8880 11 6 6.0031 -1.3631 -3.4057 12 1 6.7484 -1.9198 -2.8376 13 6 6.5446 -0.2785 -4.3009 14 6 5.9344 0.2132 -5.4595 15 7 6.7010 1.1480 -5.9599 16 7 7.8297 1.2738 -5.1399 17 6 8.9440 2.2029 -5.3438 18 6 7.7098 0.3877 -4.1291 19 6 2.8802 -1.9416 0.6331 20 6 2.0664 -0.7704 1.2244 21 1 1.2399 -1.1485 1.8260 22 6 2.9692 0.1326 2.0673 23 6 3.3889 -0.6090 3.3380 24 7 4.2538 0.2554 4.1448 25 6 4.7559 -0.1979 5.3354 26 1 4.5147 -1.1928 5.6795 27 6 5.5751 0.6213 6.1001 28 7 5.8695 1.8337 5.6806 29 14 6.2606 0.0027 7.7239 30 1 7.0873 -1.2072 7.4834 31 1 7.1001 1.0604 8.3418 32 1 5.1399 -0.3370 8.6371 33 1 -0.3633 0.5028 0.8963 34 1 -0.3633 -1.0276 -0.0126 35 1 -0.3634 0.5247 -0.8836 36 1 1.3235 -1.4844 -1.5808 37 1 2.3400 -0.0774 -2.0207 38 1 4.6999 -3.1847 -3.6373 39 1 4.3466 -1.8435 -4.8527 40 1 4.9919 -0.1193 -5.8688 41 1 9.7078 1.7251 -5.9575 42 1 8.5821 3.0994 -5.8471 43 1 9.3712 2.4753 -4.3788 44 1 8.4169 0.2376 -3.3267 45 1 3.7673 -2.1313 1.2374 46 1 2.2646 -2.8390 0.5709 47 1 3.8562 0.3984 1.4920 48 1 2.4266 1.0384 2.3377 49 1 2.5020 -0.8749 3.9132 50 1 3.9316 -1.5149 3.0675 51 1 4.4708 1.1488 3.8356 52 1 6.4421 2.4059 6.2148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104706611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:00 Heat of formation + Delta-G solvation = 54.493871 kcal Electronic energy + Delta-G solvation = -29983.789126 eV Core-core repulsion = 25985.024039 eV Total energy + Delta-G solvation = -3998.765086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.24662 -41.24935 -39.49724 -37.38107 -36.85089 -34.47933 -33.90869 -33.44761 -31.79825 -31.13160 -28.89808 -27.69848 -27.20502 -26.36909 -24.72280 -23.89776 -23.81980 -21.98944 -21.94085 -20.86623 -20.65112 -19.95719 -19.17792 -18.46472 -17.60463 -17.08376 -16.81078 -16.67446 -16.29363 -15.75264 -15.62155 -15.40324 -15.30003 -15.18036 -15.04488 -14.53525 -14.43939 -14.02213 -13.76913 -13.65567 -13.55571 -13.40219 -13.30398 -13.18842 -12.98117 -12.82100 -12.78968 -12.74780 -12.36067 -12.32050 -12.17117 -11.90846 -11.86688 -11.59668 -11.56157 -11.45716 -11.37428 -11.23516 -10.94058 -10.85991 -10.39457 -9.70652 -9.21327 -9.04481 -7.98863 -5.28626 0.88571 1.43285 1.44383 1.47895 1.53842 1.65605 1.74867 2.02339 2.53083 3.02789 3.33919 3.40273 3.55830 3.60838 3.70412 3.80756 3.91242 3.96019 4.06246 4.15083 4.21228 4.29113 4.33438 4.34040 4.39709 4.41968 4.44070 4.48649 4.62412 4.67627 4.68436 4.74870 4.75660 4.81964 4.84976 4.89796 4.93349 5.02899 5.04067 5.13749 5.18586 5.28122 5.30337 5.33071 5.37953 5.40556 5.44845 5.61219 5.68098 6.06515 6.23511 6.60462 6.70717 7.17426 7.28651 8.04572 8.28082 9.24884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.002472 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.971978 B =11322.331910 C =13430.244243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.107 3.893 5 N -0.619 5.619 6 C 0.551 3.449 7 O -0.595 6.595 8 C -0.180 4.180 9 H 0.139 0.861 10 C -0.116 4.116 11 C -0.047 4.047 12 H 0.099 0.901 13 C -0.220 4.220 14 C 0.056 3.944 15 N -0.331 5.331 16 N -0.381 5.381 17 C 0.093 3.907 18 C 0.058 3.942 19 C 0.102 3.898 20 C -0.085 4.085 21 H 0.104 0.896 22 C -0.100 4.100 23 C 0.151 3.849 24 N -0.749 5.749 25 C -0.251 4.251 26 H 0.074 0.926 27 C -0.078 4.078 28 N -0.971 5.971 29 Si 0.978 3.022 30 H -0.280 1.280 31 H -0.291 1.291 32 H -0.273 1.273 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.209 0.791 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.189 0.811 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.037 0.963 48 H 0.066 0.934 49 H 0.027 0.973 50 H 0.009 0.991 51 H 0.372 0.628 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -3.646 -28.048 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.015 4.015 5 N -0.351 5.351 6 C 0.342 3.658 7 O -0.476 6.476 8 C -0.201 4.201 9 H 0.157 0.843 10 C -0.153 4.153 11 C -0.067 4.067 12 H 0.117 0.883 13 C -0.232 4.232 14 C -0.130 4.130 15 N -0.152 5.152 16 N -0.163 5.163 17 C -0.047 4.047 18 C -0.089 4.089 19 C -0.020 4.020 20 C -0.104 4.104 21 H 0.122 0.878 22 C -0.138 4.138 23 C 0.025 3.975 24 N -0.392 5.392 25 C -0.383 4.383 26 H 0.092 0.908 27 C -0.270 4.270 28 N -0.622 5.622 29 Si 0.806 3.194 30 H -0.206 1.206 31 H -0.217 1.217 32 H -0.199 1.199 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.225 0.775 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.206 0.794 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.045 0.955 50 H 0.027 0.973 51 H 0.203 0.797 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.559 -3.122 -28.659 29.566 hybrid contribution 0.980 -0.302 2.060 2.301 sum -5.579 -3.424 -26.600 27.393 Atomic orbital electron populations 1.21781 0.91773 1.02994 1.02756 1.22172 0.97731 0.99117 0.92840 0.90764 1.22800 0.85778 0.96054 0.96840 1.49036 1.13466 1.55381 1.17250 1.19959 0.79914 0.78552 0.87335 1.90696 1.43070 1.44875 1.68945 1.22259 1.04633 1.03269 0.89957 0.84331 1.23141 0.98619 0.96634 0.96894 1.20075 0.90230 0.97644 0.98725 0.88262 1.19318 0.98168 1.05165 1.00509 1.24139 1.00449 0.94109 0.94279 1.77291 0.96920 1.22358 1.18671 1.48756 1.17725 1.30389 1.19442 1.22172 0.85363 0.92186 1.05026 1.22702 0.99707 0.92353 0.94141 1.22488 0.98694 0.97668 0.83173 1.22127 0.97417 0.94566 0.96320 0.87751 1.21605 0.98637 0.98744 0.94855 1.20877 0.92436 0.92946 0.91271 1.42611 1.58302 1.16075 1.22166 1.19632 1.22946 0.98692 0.97004 0.90790 1.25651 1.01612 0.96655 1.03055 1.69824 1.42444 1.09295 1.40594 0.85155 0.78094 0.76884 0.79312 1.20596 1.21743 1.19891 0.92556 0.91232 0.90724 0.88192 0.88518 0.88328 0.84483 0.77498 0.89379 0.88904 0.87573 0.79373 0.93244 0.89092 0.94463 0.91564 0.95530 0.97281 0.79686 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.91 71.98 0.64 -0.96 16 2 C -0.10 -1.70 3.30 -9.89 -0.03 -1.73 16 3 H 0.07 1.44 7.71 -2.38 -0.02 1.42 16 4 C 0.11 1.61 6.47 86.50 0.56 2.17 16 5 N -0.62 -15.14 3.32 -807.53 -2.68 -17.82 16 6 C 0.55 15.88 7.70 87.66 0.67 16.55 16 7 O -0.59 -23.32 16.52 -3.01 -0.05 -23.37 16 8 C -0.18 -3.56 5.29 -11.54 -0.06 -3.63 16 9 H 0.14 2.24 7.06 -2.39 -0.02 2.22 16 10 C -0.12 -1.68 9.73 30.59 0.30 -1.38 16 11 C -0.05 -0.95 5.76 -11.54 -0.07 -1.01 16 12 H 0.10 2.49 7.67 -2.39 -0.02 2.48 16 13 C -0.22 -4.26 5.76 -20.14 -0.12 -4.37 16 14 C 0.06 0.98 11.35 85.24 0.97 1.95 16 15 N -0.33 -7.05 12.58 -57.02 -0.72 -7.76 16 16 N -0.38 -7.03 4.01 -369.55 -1.48 -8.52 16 17 C 0.09 0.94 11.47 127.77 1.47 2.41 16 18 C 0.06 1.10 11.40 83.54 0.95 2.05 16 19 C 0.10 2.72 6.45 86.53 0.56 3.28 16 20 C -0.08 -2.02 2.71 -9.89 -0.03 -2.04 16 21 H 0.10 2.18 7.71 -2.39 -0.02 2.16 16 22 C -0.10 -3.41 4.54 30.60 0.14 -3.27 16 23 C 0.15 6.51 6.11 86.38 0.53 7.04 16 24 N -0.75 -41.36 5.60 -343.44 -1.92 -43.28 16 25 C -0.25 -14.99 9.99 84.04 0.84 -14.15 16 26 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 27 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 28 N -0.97 -62.07 13.06 21.65 0.28 -61.79 16 29 Si 0.98 48.05 29.55 68.60 2.03 50.08 16 30 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 31 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 32 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 1.04 7.85 -2.38 -0.02 1.02 16 37 H 0.10 1.13 6.78 -2.39 -0.02 1.11 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.14 1.08 6.97 -2.39 -0.02 1.06 16 40 H 0.21 2.14 7.19 -2.91 -0.02 2.12 16 41 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.05 1.75 6.14 -2.39 -0.01 1.73 16 46 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.43 8.13 -2.38 -0.02 1.41 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.01 0.42 6.66 -2.39 -0.02 0.40 16 51 H 0.37 21.71 7.67 -92.71 -0.71 21.00 16 52 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -84.59 421.58 3.45 -81.14 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.20 Total: 32.65 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 7.79 Total: -1.33 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -6.52 Total: -139.17 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -84.59 3.45 -81.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104706611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.630 kcal (2) G-P(sol) polarization free energy of solvation -84.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds