Wall clock time and date at job start Wed Apr 1 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.65875 * 2 1 4 4 C 1.54590 * 110.98962 * 236.83484 * 2 1 3 5 5 N 1.48122 * 103.42130 * 204.37104 * 4 2 1 6 6 C 1.34768 * 127.03549 * 219.28360 * 5 4 2 7 7 O 1.21603 * 120.00055 * 5.33421 * 6 5 4 8 8 C 1.47431 * 120.00010 * 185.33275 * 6 5 4 9 9 C 1.41287 * 126.41599 * 7.08474 * 8 6 5 10 10 N 1.30457 * 108.02306 * 179.72350 * 9 8 6 11 11 N 1.39932 * 108.89538 * 0.40902 * 10 9 8 12 12 C 1.46497 * 125.75204 * 179.84930 * 11 10 9 13 13 C 1.53005 * 109.46964 * 304.69156 * 12 11 10 14 14 C 1.52997 * 117.49583 * 243.62221 * 13 12 11 15 15 C 1.52995 * 117.49544 * 175.00196 * 13 12 11 16 16 C 1.34262 * 108.49034 * 359.58606 * 11 10 9 17 17 C 1.47489 * 105.93001 * 39.02968 * 5 4 2 18 18 C 1.54008 * 107.08273 * 334.77513 * 17 5 4 19 19 H 1.08997 * 110.32306 * 120.30054 * 18 17 5 20 20 C 1.52999 * 110.32512 * 242.41666 * 18 17 5 21 21 C 1.53002 * 109.46970 * 293.54405 * 20 18 17 22 22 N 1.46495 * 109.47368 * 180.02562 * 21 20 18 23 23 C 1.36930 * 120.00505 * 180.02562 * 22 21 20 24 24 H 1.08007 * 119.99967 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00284 * 179.97438 * 23 22 21 26 26 N 1.31615 * 120.00165 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99822 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47437 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46947 * 120.00159 * 27 25 23 30 30 H 1.48503 * 109.46980 * 239.99906 * 27 25 23 31 31 H 1.09002 * 109.47478 * 296.82007 * 1 2 3 32 32 H 1.08999 * 109.47200 * 56.81478 * 1 2 3 33 33 H 1.08999 * 109.47383 * 176.81235 * 1 2 3 34 34 H 1.09002 * 110.61602 * 85.86236 * 4 2 1 35 35 H 1.08992 * 110.55157 * 322.85690 * 4 2 1 36 36 H 1.07999 * 125.98921 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47173 * 184.69140 * 12 11 10 38 38 H 1.08996 * 109.47385 * 64.69200 * 12 11 10 39 39 H 1.08996 * 115.54734 * 29.33273 * 13 12 11 40 40 H 1.08997 * 117.50459 * 0.02562 * 14 13 12 41 41 H 1.08996 * 117.49847 * 145.02510 * 14 13 12 42 42 H 1.09005 * 117.49762 * 214.97763 * 15 13 12 43 43 H 1.09000 * 117.50406 * 359.97438 * 15 13 12 44 44 H 1.07998 * 126.28581 * 180.26663 * 16 11 10 45 45 H 1.09004 * 109.91502 * 94.13611 * 17 5 4 46 46 H 1.09000 * 109.91095 * 215.22527 * 17 5 4 47 47 H 1.08998 * 109.47271 * 53.54271 * 20 18 17 48 48 H 1.08997 * 109.47120 * 173.55085 * 20 18 17 49 49 H 1.08999 * 109.47409 * 300.00385 * 21 20 18 50 50 H 1.09006 * 109.46904 * 60.00277 * 21 20 18 51 51 H 0.97002 * 119.99787 * 359.97438 * 22 21 20 52 52 H 0.96998 * 120.00479 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7896 -1.2082 5 7 3.4322 -1.2057 -0.7581 6 6 4.5593 -1.2407 -1.4961 7 8 4.5535 -0.8157 -2.6354 8 6 5.7993 -1.7942 -0.9221 9 6 5.9282 -2.4471 0.3243 10 7 7.1770 -2.7947 0.4706 11 7 7.8980 -2.3786 -0.6541 12 6 9.3330 -2.5771 -0.8726 13 6 10.1142 -1.9889 0.3042 14 6 11.0529 -0.8164 0.0132 15 6 11.6295 -2.1995 0.3218 16 6 7.0519 -1.7718 -1.5018 17 6 3.2902 -1.5680 0.6645 18 6 2.0774 -0.7914 1.2103 19 1 1.3228 -1.4827 1.5853 20 6 2.5156 0.1681 2.3185 21 6 3.0050 -0.6357 3.5249 22 7 3.4241 0.2829 4.5863 23 6 3.9028 -0.2113 5.7702 24 1 3.9712 -1.2785 5.9216 25 6 4.3004 0.6592 6.7757 26 7 4.2177 1.9597 6.5911 27 14 4.9528 -0.0153 8.3909 28 1 4.9456 -1.4995 8.3466 29 1 6.3414 0.4664 8.6036 30 1 4.0907 0.4514 9.5064 31 1 -0.3634 0.4637 0.9171 32 1 -0.3633 0.5625 -0.8600 33 1 -0.3634 -1.0260 -0.0571 34 1 2.1525 -0.1482 -2.0869 35 1 1.4612 -1.6602 -1.4141 36 1 5.1314 -2.6309 1.0297 37 1 9.6328 -2.0775 -1.7938 38 1 9.5442 -3.6435 -0.9523 39 1 9.5944 -1.9923 1.2621 40 1 11.1137 -0.4636 -1.0163 41 1 11.1508 -0.0479 0.7799 42 1 12.1067 -2.3410 1.2916 43 1 12.0698 -2.7575 -0.5046 44 1 7.3049 -1.3451 -2.4611 45 1 3.1178 -2.6401 0.7592 46 1 4.1908 -1.2872 1.2107 47 1 3.3233 0.8017 1.9522 48 1 1.6714 0.7905 2.6150 49 1 2.1974 -1.2694 3.8912 50 1 3.8493 -1.2582 3.2284 51 1 3.3631 1.2414 4.4502 52 1 4.4951 2.5680 7.2938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104879842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:03 Heat of formation + Delta-G solvation = 79.650389 kcal Electronic energy + Delta-G solvation = -30408.396949 eV Core-core repulsion = 26410.722732 eV Total energy + Delta-G solvation = -3997.674218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55493 -39.89835 -37.98977 -37.69022 -35.03732 -33.59038 -32.83842 -32.10680 -30.43274 -30.11175 -27.95749 -27.05429 -26.14776 -24.46976 -22.87970 -22.76998 -22.02747 -21.95599 -20.68640 -20.43380 -19.91702 -19.40731 -17.69288 -17.05494 -16.40745 -16.17505 -15.98021 -15.43309 -15.23426 -14.72372 -14.59935 -14.45824 -14.24101 -14.12955 -13.58408 -13.38480 -13.34578 -13.19529 -12.94470 -12.93274 -12.66377 -12.32216 -12.11645 -11.96692 -11.91163 -11.80780 -11.30915 -11.12153 -11.08155 -10.97520 -10.85861 -10.83558 -10.50979 -10.48282 -10.39542 -10.26572 -9.92333 -9.81640 -9.68835 -9.63661 -8.88267 -8.84766 -8.56719 -6.89195 -5.74180 -3.02573 1.41882 2.10532 2.14708 3.00224 3.36923 3.44662 3.45046 3.50327 3.52535 3.97630 4.35898 4.42822 4.49593 4.55225 4.60516 4.60865 4.62726 4.78099 4.79314 4.94821 5.00851 5.04502 5.16275 5.25366 5.29320 5.35977 5.41342 5.48259 5.52333 5.52929 5.57972 5.60452 5.67031 5.70809 5.72841 5.80786 5.84416 5.85993 6.04927 6.10160 6.11590 6.18002 6.31566 6.35990 6.39100 6.51888 6.65441 6.85497 6.90783 7.43905 7.58351 7.72736 8.24910 8.44831 9.55964 10.14794 10.48770 11.48920 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.005811 B = 0.003670 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4817.556010 B = 7628.479440 C =11827.657680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.084 0.916 4 C 0.112 3.888 5 N -0.616 5.616 6 C 0.617 3.383 7 O -0.558 6.558 8 C -0.290 4.290 9 C 0.076 3.924 10 N -0.289 5.289 11 N -0.358 5.358 12 C 0.163 3.837 13 C -0.173 4.173 14 C -0.177 4.177 15 C -0.168 4.168 16 C 0.127 3.873 17 C 0.093 3.907 18 C -0.091 4.091 19 H 0.088 0.912 20 C -0.118 4.118 21 C 0.152 3.848 22 N -0.734 5.734 23 C -0.237 4.237 24 H 0.071 0.929 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.198 0.802 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.186 0.814 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.018 0.982 50 H 0.017 0.983 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -9.013 -20.136 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.011 4.011 5 N -0.349 5.349 6 C 0.408 3.592 7 O -0.438 6.438 8 C -0.305 4.305 9 C -0.112 4.112 10 N -0.108 5.108 11 N -0.136 5.136 12 C 0.043 3.957 13 C -0.192 4.192 14 C -0.214 4.214 15 C -0.206 4.206 16 C -0.025 4.025 17 C -0.030 4.030 18 C -0.111 4.111 19 H 0.106 0.894 20 C -0.156 4.156 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.368 4.368 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.736 3.264 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.214 0.786 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.203 0.797 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.036 0.964 50 H 0.035 0.965 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.114 -9.537 -19.922 22.918 hybrid contribution -0.185 0.439 0.571 0.744 sum 5.928 -9.098 -19.351 22.190 Atomic orbital electron populations 1.21721 0.93830 1.01976 1.02226 1.22299 0.96064 0.99898 0.94010 0.89753 1.22445 0.82200 0.98566 0.97860 1.48462 1.08125 1.66529 1.11775 1.16796 0.81069 0.77220 0.84091 1.90745 1.84958 1.49579 1.18521 1.20124 0.94349 1.16872 0.99172 1.24682 0.94854 0.95683 0.95936 1.77245 1.05145 1.22654 1.05768 1.48537 1.08193 1.42820 1.14077 1.21383 0.73990 1.02424 0.97939 1.22577 0.92457 1.03546 1.00590 1.23120 1.03359 0.91927 1.02978 1.22972 0.94254 0.99676 1.03697 1.22899 0.89150 0.94268 0.96157 1.22653 1.00210 0.99086 0.81064 1.22157 0.96366 0.97464 0.95105 0.89398 1.21810 1.01227 0.97851 0.94730 1.20700 0.96070 0.92880 0.87906 1.42373 1.77174 1.05066 1.13157 1.19279 1.34107 0.92000 0.91450 0.91142 1.24732 1.02410 0.95299 0.98602 1.69668 1.54168 1.00808 1.33628 0.86142 0.78286 0.77939 0.84015 1.20523 1.21925 1.21876 0.91803 0.92570 0.92434 0.89955 0.91088 0.78553 0.88260 0.88853 0.86017 0.88538 0.88288 0.88162 0.88472 0.79726 0.91275 0.89224 0.91838 0.91435 0.96382 0.96533 0.78340 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.17 37.16 0.34 -0.88 16 2 C -0.10 -1.09 3.18 -88.94 -0.28 -1.38 16 3 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 4 C 0.11 1.24 6.54 -2.31 -0.02 1.22 16 5 N -0.62 -7.92 3.29 -171.24 -0.56 -8.48 16 6 C 0.62 9.08 7.87 -12.52 -0.10 8.98 16 7 O -0.56 -9.60 17.10 5.27 0.09 -9.51 16 8 C -0.29 -3.89 6.06 -105.07 -0.64 -4.53 16 9 C 0.08 1.01 10.34 -16.98 -0.18 0.84 16 10 N -0.29 -3.99 12.15 30.86 0.38 -3.61 16 11 N -0.36 -4.00 3.65 -60.81 -0.22 -4.22 16 12 C 0.16 1.24 6.77 -4.04 -0.03 1.21 16 13 C -0.17 -1.49 5.93 -90.62 -0.54 -2.03 16 14 C -0.18 -1.32 10.18 -26.73 -0.27 -1.59 16 15 C -0.17 -1.12 10.25 -26.74 -0.27 -1.39 16 16 C 0.13 1.44 11.26 -16.56 -0.19 1.26 16 17 C 0.09 1.09 4.41 -2.97 -0.01 1.08 16 18 C -0.09 -1.07 2.61 -89.24 -0.23 -1.30 16 19 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 20 C -0.12 -1.81 4.53 -26.73 -0.12 -1.93 16 21 C 0.15 2.93 6.08 -4.04 -0.02 2.90 16 22 N -0.73 -18.61 5.60 -59.91 -0.34 -18.95 16 23 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 24 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 27 Si 0.90 22.58 29.55 -169.99 -5.02 17.55 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 35 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 36 H 0.20 2.35 4.98 -52.49 -0.26 2.09 16 37 H 0.10 0.49 7.80 -51.93 -0.40 0.08 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.12 1.40 7.91 -51.93 -0.41 0.99 16 40 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.19 1.61 8.06 -52.49 -0.42 1.18 16 45 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 46 H 0.09 1.18 4.45 -51.93 -0.23 0.95 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.32 6.88 -51.93 -0.36 -0.04 16 51 H 0.38 10.28 7.67 -40.82 -0.31 9.96 16 52 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 419.06 15.07 6.32 6.32 Total: -1.00 -35.09 419.06 -10.08 -45.17 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.63 Total: 8.40 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.80 Total: -4.88 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.02 Total: -63.05 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.09 -10.08 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104879842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.817 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds