Wall clock time and date at job start Wed Apr 1 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.65875 * 2 1 4 4 C 1.54590 * 110.98962 * 236.83484 * 2 1 3 5 5 N 1.48122 * 103.42130 * 204.37104 * 4 2 1 6 6 C 1.34768 * 127.03549 * 219.28360 * 5 4 2 7 7 O 1.21603 * 120.00055 * 5.33421 * 6 5 4 8 8 C 1.47431 * 120.00010 * 185.33275 * 6 5 4 9 9 C 1.41287 * 126.41599 * 7.08474 * 8 6 5 10 10 N 1.30457 * 108.02306 * 179.72350 * 9 8 6 11 11 N 1.39932 * 108.89538 * 0.40902 * 10 9 8 12 12 C 1.46497 * 125.75204 * 179.84930 * 11 10 9 13 13 C 1.53005 * 109.46964 * 304.69156 * 12 11 10 14 14 C 1.52997 * 117.49583 * 243.62221 * 13 12 11 15 15 C 1.52995 * 117.49544 * 175.00196 * 13 12 11 16 16 C 1.34262 * 108.49034 * 359.58606 * 11 10 9 17 17 C 1.47489 * 105.93001 * 39.02968 * 5 4 2 18 18 C 1.54008 * 107.08273 * 334.77513 * 17 5 4 19 19 H 1.08997 * 110.32306 * 120.30054 * 18 17 5 20 20 C 1.52999 * 110.32512 * 242.41666 * 18 17 5 21 21 C 1.53002 * 109.46970 * 293.54405 * 20 18 17 22 22 N 1.46495 * 109.47368 * 180.02562 * 21 20 18 23 23 C 1.36930 * 120.00505 * 180.02562 * 22 21 20 24 24 H 1.08007 * 119.99967 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00284 * 179.97438 * 23 22 21 26 26 N 1.31615 * 120.00165 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99822 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47437 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46947 * 120.00159 * 27 25 23 30 30 H 1.48503 * 109.46980 * 239.99906 * 27 25 23 31 31 H 1.09002 * 109.47478 * 296.82007 * 1 2 3 32 32 H 1.08999 * 109.47200 * 56.81478 * 1 2 3 33 33 H 1.08999 * 109.47383 * 176.81235 * 1 2 3 34 34 H 1.09002 * 110.61602 * 85.86236 * 4 2 1 35 35 H 1.08992 * 110.55157 * 322.85690 * 4 2 1 36 36 H 1.07999 * 125.98921 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47173 * 184.69140 * 12 11 10 38 38 H 1.08996 * 109.47385 * 64.69200 * 12 11 10 39 39 H 1.08996 * 115.54734 * 29.33273 * 13 12 11 40 40 H 1.08997 * 117.50459 * 0.02562 * 14 13 12 41 41 H 1.08996 * 117.49847 * 145.02510 * 14 13 12 42 42 H 1.09005 * 117.49762 * 214.97763 * 15 13 12 43 43 H 1.09000 * 117.50406 * 359.97438 * 15 13 12 44 44 H 1.07998 * 126.28581 * 180.26663 * 16 11 10 45 45 H 1.09004 * 109.91502 * 94.13611 * 17 5 4 46 46 H 1.09000 * 109.91095 * 215.22527 * 17 5 4 47 47 H 1.08998 * 109.47271 * 53.54271 * 20 18 17 48 48 H 1.08997 * 109.47120 * 173.55085 * 20 18 17 49 49 H 1.08999 * 109.47409 * 300.00385 * 21 20 18 50 50 H 1.09006 * 109.46904 * 60.00277 * 21 20 18 51 51 H 0.97002 * 119.99787 * 359.97438 * 22 21 20 52 52 H 0.96998 * 120.00479 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7896 -1.2082 5 7 3.4322 -1.2057 -0.7581 6 6 4.5593 -1.2407 -1.4961 7 8 4.5535 -0.8157 -2.6354 8 6 5.7993 -1.7942 -0.9221 9 6 5.9282 -2.4471 0.3243 10 7 7.1770 -2.7947 0.4706 11 7 7.8980 -2.3786 -0.6541 12 6 9.3330 -2.5771 -0.8726 13 6 10.1142 -1.9889 0.3042 14 6 11.0529 -0.8164 0.0132 15 6 11.6295 -2.1995 0.3218 16 6 7.0519 -1.7718 -1.5018 17 6 3.2902 -1.5680 0.6645 18 6 2.0774 -0.7914 1.2103 19 1 1.3228 -1.4827 1.5853 20 6 2.5156 0.1681 2.3185 21 6 3.0050 -0.6357 3.5249 22 7 3.4241 0.2829 4.5863 23 6 3.9028 -0.2113 5.7702 24 1 3.9712 -1.2785 5.9216 25 6 4.3004 0.6592 6.7757 26 7 4.2177 1.9597 6.5911 27 14 4.9528 -0.0153 8.3909 28 1 4.9456 -1.4995 8.3466 29 1 6.3414 0.4664 8.6036 30 1 4.0907 0.4514 9.5064 31 1 -0.3634 0.4637 0.9171 32 1 -0.3633 0.5625 -0.8600 33 1 -0.3634 -1.0260 -0.0571 34 1 2.1525 -0.1482 -2.0869 35 1 1.4612 -1.6602 -1.4141 36 1 5.1314 -2.6309 1.0297 37 1 9.6328 -2.0775 -1.7938 38 1 9.5442 -3.6435 -0.9523 39 1 9.5944 -1.9923 1.2621 40 1 11.1137 -0.4636 -1.0163 41 1 11.1508 -0.0479 0.7799 42 1 12.1067 -2.3410 1.2916 43 1 12.0698 -2.7575 -0.5046 44 1 7.3049 -1.3451 -2.4611 45 1 3.1178 -2.6401 0.7592 46 1 4.1908 -1.2872 1.2107 47 1 3.3233 0.8017 1.9522 48 1 1.6714 0.7905 2.6150 49 1 2.1974 -1.2694 3.8912 50 1 3.8493 -1.2582 3.2284 51 1 3.3631 1.2414 4.4502 52 1 4.4951 2.5680 7.2938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104879842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:01 Heat of formation + Delta-G solvation = 58.327442 kcal Electronic energy + Delta-G solvation = -30409.321582 eV Core-core repulsion = 26410.722732 eV Total energy + Delta-G solvation = -3998.598850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.48614 -40.89942 -38.98257 -38.44448 -36.78070 -34.63572 -34.09254 -33.36967 -31.76409 -31.36461 -28.72561 -28.47068 -26.96356 -26.03482 -24.37024 -23.34227 -23.14929 -22.80991 -21.82519 -21.33101 -20.89185 -20.39374 -19.11440 -18.57934 -17.34473 -17.19451 -16.82733 -16.62927 -16.32581 -16.07639 -15.67393 -15.57012 -15.37847 -15.16167 -14.92019 -14.88961 -14.40682 -14.22105 -13.93913 -13.89026 -13.68076 -13.37977 -13.14115 -13.01521 -12.87100 -12.75870 -12.67098 -12.44054 -12.39961 -12.26383 -12.07584 -12.03187 -11.86889 -11.56204 -11.48184 -11.45873 -11.19891 -11.09302 -10.93900 -10.88876 -10.59100 -9.88657 -9.53431 -8.97540 -7.94512 -5.22773 0.49418 1.11470 1.33805 1.46872 1.47586 1.57704 2.02504 2.39769 2.56405 2.78657 3.25581 3.39801 3.50223 3.58454 3.69652 3.75354 3.78709 3.90868 3.95040 4.01688 4.13541 4.17370 4.23459 4.32870 4.33126 4.45576 4.47511 4.52414 4.55279 4.60454 4.65678 4.73488 4.73635 4.82535 4.83639 4.87555 4.95950 4.99125 5.02036 5.14985 5.18852 5.19488 5.25664 5.32730 5.38960 5.41074 5.43582 5.51958 5.61864 5.85749 6.28479 6.48426 6.54812 7.16917 7.34280 8.12193 8.33460 9.29650 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.005811 B = 0.003670 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4817.556010 B = 7628.479440 C =11827.657680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 H 0.068 0.932 4 C 0.111 3.889 5 N -0.617 5.617 6 C 0.612 3.388 7 O -0.591 6.591 8 C -0.315 4.315 9 C 0.071 3.929 10 N -0.321 5.321 11 N -0.352 5.352 12 C 0.158 3.842 13 C -0.190 4.190 14 C -0.179 4.179 15 C -0.152 4.152 16 C 0.136 3.864 17 C 0.094 3.906 18 C -0.082 4.082 19 H 0.109 0.891 20 C -0.103 4.103 21 C 0.150 3.850 22 N -0.750 5.750 23 C -0.241 4.241 24 H 0.077 0.923 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.970 3.030 28 H -0.264 1.264 29 H -0.296 1.296 30 H -0.292 1.292 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.203 0.797 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.213 0.787 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.023 0.977 51 H 0.372 0.628 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -10.725 -21.362 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.011 4.011 5 N -0.349 5.349 6 C 0.404 3.596 7 O -0.474 6.474 8 C -0.330 4.330 9 C -0.116 4.116 10 N -0.141 5.141 11 N -0.130 5.130 12 C 0.039 3.961 13 C -0.209 4.209 14 C -0.216 4.216 15 C -0.189 4.189 16 C -0.017 4.017 17 C -0.029 4.029 18 C -0.102 4.102 19 H 0.127 0.873 20 C -0.141 4.141 21 C 0.024 3.976 22 N -0.392 5.392 23 C -0.373 4.373 24 H 0.095 0.905 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.799 3.201 28 H -0.189 1.189 29 H -0.223 1.223 30 H -0.219 1.219 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.219 0.781 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.230 0.770 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.045 0.955 50 H 0.041 0.959 51 H 0.203 0.797 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.209 -11.301 -21.143 24.765 hybrid contribution -0.178 0.958 0.920 1.340 sum 6.030 -10.343 -20.223 23.502 Atomic orbital electron populations 1.21700 0.91942 1.03157 1.02494 1.22221 0.97485 0.98721 0.93073 0.91351 1.22585 0.81605 0.99339 0.97554 1.48537 1.08427 1.65874 1.12044 1.17005 0.81758 0.76966 0.83836 1.90712 1.85540 1.51322 1.19800 1.20212 0.94839 1.18243 0.99715 1.24802 0.95007 0.95651 0.96113 1.77179 1.05582 1.23834 1.07461 1.48813 1.09305 1.41766 1.13093 1.21766 0.71815 1.03745 0.98794 1.22443 0.93582 1.05369 0.99509 1.23198 1.02896 0.91834 1.03682 1.23067 0.92432 0.99008 1.04442 1.23346 0.88560 0.93065 0.96745 1.22685 0.99445 1.00394 0.80353 1.22101 0.96782 0.97073 0.94229 0.87325 1.21635 1.00345 0.97863 0.94274 1.20911 0.96345 0.92587 0.87784 1.42644 1.77256 1.05354 1.13939 1.19696 1.32860 0.92351 0.92357 0.90490 1.25552 1.03633 0.95618 1.02127 1.69823 1.55889 1.02027 1.34540 0.85114 0.77075 0.78074 0.79800 1.18871 1.22303 1.21886 0.92229 0.91576 0.90873 0.90830 0.88862 0.78068 0.84806 0.87484 0.89715 0.86551 0.89729 0.88593 0.85936 0.77019 0.88942 0.90904 0.93596 0.91684 0.95488 0.95925 0.79712 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.17 71.98 0.66 -1.38 16 2 C -0.10 -1.89 3.18 -9.70 -0.03 -1.92 16 3 H 0.07 1.58 7.86 -2.39 -0.02 1.56 16 4 C 0.11 2.29 6.54 86.61 0.57 2.86 16 5 N -0.62 -15.40 3.29 -813.94 -2.68 -18.08 16 6 C 0.61 17.92 7.87 86.67 0.68 18.60 16 7 O -0.59 -20.29 17.10 -4.04 -0.07 -20.36 16 8 C -0.32 -8.40 6.06 -20.15 -0.12 -8.52 16 9 C 0.07 1.91 10.34 85.65 0.89 2.79 16 10 N -0.32 -8.92 12.15 -56.27 -0.68 -9.60 16 11 N -0.35 -7.56 3.65 -346.29 -1.26 -8.82 16 12 C 0.16 2.11 6.77 86.38 0.58 2.69 16 13 C -0.19 -3.16 5.93 -10.79 -0.06 -3.23 16 14 C -0.18 -2.47 10.18 30.59 0.31 -2.16 16 15 C -0.15 -1.77 10.25 30.59 0.31 -1.46 16 16 C 0.14 2.95 11.26 84.28 0.95 3.90 16 17 C 0.09 2.10 4.41 86.53 0.38 2.49 16 18 C -0.08 -1.80 2.61 -9.90 -0.03 -1.83 16 19 H 0.11 2.00 7.86 -2.39 -0.02 1.99 16 20 C -0.10 -3.12 4.53 30.59 0.14 -2.99 16 21 C 0.15 5.71 6.08 86.38 0.53 6.23 16 22 N -0.75 -38.43 5.60 -343.45 -1.92 -40.36 16 23 C -0.24 -13.58 9.99 84.04 0.84 -12.74 16 24 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 26 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 27 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 28 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 30 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.90 8.11 -2.39 -0.02 0.88 16 34 H 0.07 1.68 7.81 -2.39 -0.02 1.66 16 35 H 0.09 1.54 8.02 -2.39 -0.02 1.52 16 36 H 0.20 4.86 4.98 -2.91 -0.01 4.84 16 37 H 0.13 0.85 7.80 -2.38 -0.02 0.83 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 2.06 7.91 -2.39 -0.02 2.04 16 40 H 0.12 1.13 8.03 -2.39 -0.02 1.11 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.09 1.68 7.83 -2.39 -0.02 1.66 16 46 H 0.07 1.92 4.45 -2.39 -0.01 1.91 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.02 0.85 6.88 -2.38 -0.02 0.84 16 51 H 0.37 20.46 7.67 -92.71 -0.71 19.74 16 52 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.34 419.06 2.96 -74.38 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.21 Total: 35.03 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 7.06 Total: -0.70 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -6.27 Total: -137.07 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.07 Total: -20.36 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.34 2.96 -74.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104879842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.708 kcal (2) G-P(sol) polarization free energy of solvation -77.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds