Wall clock time and date at job start Wed Apr 1 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.80597 * 2 1 4 4 C 1.54598 * 110.83095 * 236.85146 * 2 1 3 5 5 N 1.48120 * 103.42407 * 204.44983 * 4 2 1 6 6 C 1.34779 * 127.03048 * 219.29050 * 5 4 2 7 7 O 1.21278 * 119.99360 * 179.68112 * 6 5 4 8 8 C 1.50696 * 120.00099 * 359.67791 * 6 5 4 9 9 H 1.09004 * 109.38986 * 60.13204 * 8 6 5 10 10 C 1.53030 * 109.42756 * 179.97438 * 8 6 5 11 11 C 1.53371 * 109.74595 * 191.81048 * 10 8 6 12 12 C 1.50943 * 108.20993 * 309.36121 * 11 10 8 13 13 N 1.30128 * 128.29024 * 196.68176 * 12 11 10 14 14 N 1.40311 * 108.12620 * 179.82771 * 13 12 11 15 15 H 0.97001 * 126.00541 * 179.97438 * 14 13 12 16 16 C 1.35205 * 107.99506 * 0.02562 * 14 13 12 17 17 C 1.34571 * 107.61421 * 0.07123 * 16 14 13 18 18 C 1.50886 * 128.32606 * 179.69850 * 17 16 14 19 19 C 1.47483 * 105.93282 * 39.02492 * 5 4 2 20 20 C 1.54012 * 107.08365 * 334.78116 * 19 5 4 21 21 H 1.08992 * 110.32208 * 120.29956 * 20 19 5 22 22 C 1.53001 * 110.32560 * 242.41480 * 20 19 5 23 23 C 1.53003 * 109.47118 * 293.54712 * 22 20 19 24 24 N 1.46500 * 109.47250 * 180.02562 * 23 22 20 25 25 C 1.36934 * 119.99860 * 179.97438 * 24 23 22 26 26 H 1.08001 * 120.00079 * 0.02562 * 25 24 23 27 27 C 1.38814 * 119.99698 * 180.02562 * 25 24 23 28 28 N 1.31618 * 120.00244 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 119.99867 * 180.02562 * 27 25 24 30 30 H 1.48500 * 109.47063 * 0.02562 * 29 27 25 31 31 H 1.48495 * 109.47388 * 119.99883 * 29 27 25 32 32 H 1.48496 * 109.46944 * 240.00022 * 29 27 25 33 33 H 1.09004 * 109.46815 * 296.71138 * 1 2 3 34 34 H 1.09000 * 109.47082 * 56.70475 * 1 2 3 35 35 H 1.09003 * 109.47497 * 176.71218 * 1 2 3 36 36 H 1.09000 * 110.61919 * 85.93345 * 4 2 1 37 37 H 1.08996 * 110.54569 * 322.92886 * 4 2 1 38 38 H 1.09005 * 109.42339 * 71.73506 * 10 8 6 39 39 H 1.09002 * 109.38138 * 311.86953 * 10 8 6 40 40 H 1.08997 * 109.71867 * 189.68020 * 11 10 8 41 41 H 1.09006 * 109.71362 * 69.03854 * 11 10 8 42 42 H 1.07994 * 126.19581 * 179.79725 * 16 14 13 43 43 H 1.08997 * 109.71435 * 77.03606 * 18 17 16 44 44 H 1.08998 * 109.75552 * 316.40657 * 18 17 16 45 45 H 1.08994 * 109.91121 * 94.13743 * 19 5 4 46 46 H 1.08997 * 109.91374 * 215.22715 * 19 5 4 47 47 H 1.09002 * 109.47289 * 53.54619 * 22 20 19 48 48 H 1.08997 * 109.47044 * 173.54509 * 22 20 19 49 49 H 1.09002 * 109.46964 * 300.00105 * 23 22 20 50 50 H 1.08997 * 109.47328 * 59.99972 * 23 22 20 51 51 H 0.96997 * 119.99820 * 0.02562 * 24 23 22 52 52 H 0.97003 * 120.00095 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0797 -0.7901 -1.2098 5 7 3.4278 -1.2101 -0.7623 6 6 4.5537 -1.2473 -1.5023 7 8 5.5969 -1.6097 -1.0011 8 6 4.5162 -0.8386 -2.9523 9 1 4.1865 0.1976 -3.0278 10 6 5.9165 -0.9719 -3.5550 11 6 5.9571 -0.2884 -4.9274 12 6 4.7956 -0.8007 -5.7440 13 7 4.6182 -0.7231 -7.0308 14 7 3.3967 -1.3400 -7.3411 15 1 3.0112 -1.4282 -8.2268 16 6 2.8509 -1.7889 -6.1885 17 6 3.6915 -1.4681 -5.1878 18 6 3.5369 -1.7416 -3.7120 19 6 3.2874 -1.5730 0.6603 20 6 2.0774 -0.7938 1.2087 21 1 1.3217 -1.4835 1.5844 22 6 2.5199 0.1638 2.3169 23 6 3.0095 -0.6421 3.5219 24 7 3.4326 0.2747 4.5833 25 6 3.9112 -0.2218 5.7663 26 1 3.9771 -1.2892 5.9168 27 6 4.3116 0.6470 6.7722 28 7 4.2318 1.9479 6.5887 29 14 4.9652 -0.0302 8.3858 30 1 4.9554 -1.5145 8.3399 31 1 6.3548 0.4487 8.5971 32 1 4.1055 0.4367 9.5030 33 1 -0.3633 0.4620 0.9180 34 1 -0.3633 0.5641 -0.8590 35 1 -0.3634 -1.0260 -0.0589 36 1 2.1486 -0.1483 -2.0881 37 1 1.4546 -1.6591 -1.4151 38 1 6.1633 -2.0276 -3.6684 39 1 6.6418 -0.4990 -2.8929 40 1 6.8940 -0.5281 -5.4301 41 1 5.8714 0.7912 -4.8032 42 1 1.9085 -2.3069 -6.0884 43 1 3.7662 -2.7870 -3.5057 44 1 2.5156 -1.5210 -3.4014 45 1 3.1123 -2.6447 0.7544 46 1 4.1895 -1.2951 1.2051 47 1 3.3286 0.7957 1.9497 48 1 1.6778 0.7882 2.6153 49 1 2.2008 -1.2740 3.8891 50 1 3.8516 -1.2665 3.2235 51 1 3.3731 1.2334 4.4483 52 1 4.5113 2.5550 7.2918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104901874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:12 Heat of formation + Delta-G solvation = 33.267025 kcal Electronic energy + Delta-G solvation = -30502.270655 eV Core-core repulsion = 26502.585103 eV Total energy + Delta-G solvation = -3999.685551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.86893 -40.37335 -38.37685 -36.30812 -35.10571 -33.35281 -32.49577 -32.07351 -30.83641 -30.24156 -29.17700 -26.95262 -26.55927 -25.05628 -24.29970 -22.78546 -22.22630 -21.42817 -20.65776 -19.93757 -19.44116 -18.94339 -18.03190 -17.21256 -16.92531 -16.28703 -15.80444 -15.48983 -15.04884 -14.65516 -14.49228 -14.20119 -14.13716 -13.90175 -13.67763 -13.48511 -13.32002 -13.17269 -13.06624 -12.81008 -12.80335 -12.54520 -12.20715 -12.14051 -11.92715 -11.78895 -11.41278 -11.31268 -11.17374 -11.11361 -10.97515 -10.82430 -10.65481 -10.51346 -10.37926 -10.27074 -9.90806 -9.74961 -9.74176 -9.62148 -8.82502 -8.80827 -8.70452 -6.86602 -5.71965 -3.00203 1.52506 2.35814 2.47477 2.60401 2.88191 3.46914 3.52422 3.54802 4.01464 4.26071 4.39321 4.39724 4.51270 4.59392 4.65751 4.71695 4.75122 4.90429 5.04017 5.10002 5.14064 5.18655 5.22971 5.24206 5.34642 5.35934 5.38678 5.52931 5.55081 5.59857 5.61336 5.62989 5.74114 5.76939 5.82661 5.90922 5.93115 6.01472 6.02071 6.06380 6.09155 6.18537 6.28762 6.35686 6.41369 6.48926 6.89549 6.90168 6.94381 7.31046 7.50785 7.75224 8.14263 8.47247 9.58180 10.17050 10.51330 11.51182 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002018 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.537249 B =13874.879205 C =14777.743372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.534 3.466 7 O -0.535 6.535 8 C -0.099 4.099 9 H 0.099 0.901 10 C -0.097 4.097 11 C -0.040 4.040 12 C 0.085 3.915 13 N -0.290 5.290 14 N -0.486 5.486 15 H 0.439 0.561 16 C 0.063 3.937 17 C -0.234 4.234 18 C -0.033 4.033 19 C 0.106 3.894 20 C -0.091 4.091 21 H 0.086 0.914 22 C -0.117 4.117 23 C 0.151 3.849 24 N -0.734 5.734 25 C -0.237 4.237 26 H 0.071 0.929 27 C -0.017 4.017 28 N -0.934 5.934 29 Si 0.907 3.093 30 H -0.280 1.280 31 H -0.292 1.292 32 H -0.292 1.292 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.177 0.823 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -6.681 -30.292 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.323 3.677 7 O -0.411 6.411 8 C -0.120 4.120 9 H 0.117 0.883 10 C -0.136 4.136 11 C -0.079 4.079 12 C -0.083 4.083 13 N -0.112 5.112 14 N -0.194 5.194 15 H 0.283 0.717 16 C -0.083 4.083 17 C -0.246 4.246 18 C -0.072 4.072 19 C -0.016 4.016 20 C -0.111 4.111 21 H 0.104 0.896 22 C -0.155 4.155 23 C 0.023 3.977 24 N -0.378 5.378 25 C -0.368 4.368 26 H 0.089 0.911 27 C -0.212 4.212 28 N -0.583 5.583 29 Si 0.738 3.262 30 H -0.205 1.205 31 H -0.219 1.219 32 H -0.219 1.219 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.194 0.806 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.194 -6.622 -31.048 32.552 hybrid contribution -0.451 -0.354 1.138 1.274 sum -7.644 -6.976 -29.911 31.650 Atomic orbital electron populations 1.21732 0.93830 1.01970 1.02286 1.22321 0.96080 0.99878 0.94081 0.89678 1.22674 0.83241 0.98513 0.97712 1.48806 1.08321 1.66189 1.11971 1.20218 0.82034 0.77642 0.87810 1.90736 1.29747 1.47407 1.73230 1.21290 0.98169 1.01609 0.90979 0.88343 1.21404 0.95290 1.02283 0.94591 1.20192 0.94041 1.00396 0.93286 1.22444 0.97039 0.97890 0.90964 1.77033 0.99516 1.19151 1.15487 1.46337 1.17083 1.47169 1.08827 0.71737 1.22050 0.99721 1.00394 0.86109 1.19997 0.97326 1.10889 0.96358 1.20036 0.98945 0.99413 0.88788 1.22234 0.99910 0.98745 0.80702 1.22146 0.96507 0.97403 0.94997 0.89590 1.21789 1.01044 0.97803 0.94819 1.20706 0.96174 0.92906 0.87869 1.42372 1.77113 1.05056 1.13257 1.19293 1.34020 0.92016 0.91457 0.91141 1.24750 1.02454 0.95337 0.98691 1.69673 1.54203 1.00830 1.33629 0.86110 0.78294 0.77920 0.83866 1.20549 1.21880 1.21911 0.91761 0.92603 0.92422 0.90138 0.90804 0.90824 0.89527 0.89454 0.89513 0.80638 0.90725 0.90227 0.91757 0.89547 0.91864 0.91583 0.96499 0.96278 0.78361 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.16 37.16 0.34 -0.69 16 2 C -0.10 -0.95 3.19 -88.93 -0.28 -1.23 16 3 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 4 C 0.10 0.80 4.79 -2.31 -0.01 0.79 16 5 N -0.62 -7.02 3.28 -169.98 -0.56 -7.58 16 6 C 0.53 6.74 7.23 -10.99 -0.08 6.67 16 7 O -0.53 -9.08 16.10 5.56 0.09 -8.99 16 8 C -0.10 -0.90 1.78 -91.58 -0.16 -1.06 16 9 H 0.10 0.80 7.86 -51.93 -0.41 0.40 16 10 C -0.10 -0.89 4.65 -26.52 -0.12 -1.02 16 11 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 12 C 0.09 0.80 7.10 -82.34 -0.58 0.21 16 13 N -0.29 -2.89 12.68 33.75 0.43 -2.46 16 14 N -0.49 -3.25 7.37 30.35 0.22 -3.02 16 15 H 0.44 1.51 8.96 -182.44 -1.64 -0.13 16 16 C 0.06 0.38 11.95 -17.36 -0.21 0.17 16 17 C -0.23 -1.86 5.89 -104.98 -0.62 -2.47 16 18 C -0.03 -0.24 5.18 -27.61 -0.14 -0.39 16 19 C 0.11 1.38 6.15 -2.98 -0.02 1.36 16 20 C -0.09 -1.07 2.61 -89.24 -0.23 -1.30 16 21 H 0.09 0.94 7.85 -51.93 -0.41 0.54 16 22 C -0.12 -1.82 4.53 -26.73 -0.12 -1.95 16 23 C 0.15 3.06 6.08 -4.04 -0.02 3.03 16 24 N -0.73 -19.16 5.60 -59.91 -0.34 -19.49 16 25 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 26 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 27 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 28 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 29 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 30 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 31 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 32 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.08 0.51 6.39 -51.93 -0.33 0.18 16 37 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 44 H 0.08 0.45 5.61 -51.93 -0.29 0.16 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.40 6.64 -51.93 -0.34 1.05 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.40 6.88 -51.93 -0.36 0.05 16 51 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 52 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -36.54 406.10 -10.95 -47.49 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -9.92 Total: 4.13 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.69 Total: -5.94 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.48 Total: -60.73 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.54 -10.95 -47.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104901874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.757 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds