Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.80597 * 2 1 4 4 C 1.54598 * 110.83095 * 236.85146 * 2 1 3 5 5 N 1.48120 * 103.42407 * 204.44983 * 4 2 1 6 6 C 1.34779 * 127.03048 * 219.29050 * 5 4 2 7 7 O 1.21278 * 119.99360 * 179.68112 * 6 5 4 8 8 C 1.50696 * 120.00099 * 359.67791 * 6 5 4 9 9 H 1.09004 * 109.38986 * 60.13204 * 8 6 5 10 10 C 1.53030 * 109.42756 * 179.97438 * 8 6 5 11 11 C 1.53371 * 109.74595 * 191.81048 * 10 8 6 12 12 C 1.50943 * 108.20993 * 309.36121 * 11 10 8 13 13 N 1.30128 * 128.29024 * 196.68176 * 12 11 10 14 14 N 1.40311 * 108.12620 * 179.82771 * 13 12 11 15 15 H 0.97001 * 126.00541 * 179.97438 * 14 13 12 16 16 C 1.35205 * 107.99506 * 0.02562 * 14 13 12 17 17 C 1.34571 * 107.61421 * 0.07123 * 16 14 13 18 18 C 1.50886 * 128.32606 * 179.69850 * 17 16 14 19 19 C 1.47483 * 105.93282 * 39.02492 * 5 4 2 20 20 C 1.54012 * 107.08365 * 334.78116 * 19 5 4 21 21 H 1.08992 * 110.32208 * 120.29956 * 20 19 5 22 22 C 1.53001 * 110.32560 * 242.41480 * 20 19 5 23 23 C 1.53003 * 109.47118 * 293.54712 * 22 20 19 24 24 N 1.46500 * 109.47250 * 180.02562 * 23 22 20 25 25 C 1.36934 * 119.99860 * 179.97438 * 24 23 22 26 26 H 1.08001 * 120.00079 * 0.02562 * 25 24 23 27 27 C 1.38814 * 119.99698 * 180.02562 * 25 24 23 28 28 N 1.31618 * 120.00244 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 119.99867 * 180.02562 * 27 25 24 30 30 H 1.48500 * 109.47063 * 0.02562 * 29 27 25 31 31 H 1.48495 * 109.47388 * 119.99883 * 29 27 25 32 32 H 1.48496 * 109.46944 * 240.00022 * 29 27 25 33 33 H 1.09004 * 109.46815 * 296.71138 * 1 2 3 34 34 H 1.09000 * 109.47082 * 56.70475 * 1 2 3 35 35 H 1.09003 * 109.47497 * 176.71218 * 1 2 3 36 36 H 1.09000 * 110.61919 * 85.93345 * 4 2 1 37 37 H 1.08996 * 110.54569 * 322.92886 * 4 2 1 38 38 H 1.09005 * 109.42339 * 71.73506 * 10 8 6 39 39 H 1.09002 * 109.38138 * 311.86953 * 10 8 6 40 40 H 1.08997 * 109.71867 * 189.68020 * 11 10 8 41 41 H 1.09006 * 109.71362 * 69.03854 * 11 10 8 42 42 H 1.07994 * 126.19581 * 179.79725 * 16 14 13 43 43 H 1.08997 * 109.71435 * 77.03606 * 18 17 16 44 44 H 1.08998 * 109.75552 * 316.40657 * 18 17 16 45 45 H 1.08994 * 109.91121 * 94.13743 * 19 5 4 46 46 H 1.08997 * 109.91374 * 215.22715 * 19 5 4 47 47 H 1.09002 * 109.47289 * 53.54619 * 22 20 19 48 48 H 1.08997 * 109.47044 * 173.54509 * 22 20 19 49 49 H 1.09002 * 109.46964 * 300.00105 * 23 22 20 50 50 H 1.08997 * 109.47328 * 59.99972 * 23 22 20 51 51 H 0.96997 * 119.99820 * 0.02562 * 24 23 22 52 52 H 0.97003 * 120.00095 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0797 -0.7901 -1.2098 5 7 3.4278 -1.2101 -0.7623 6 6 4.5537 -1.2473 -1.5023 7 8 5.5969 -1.6097 -1.0011 8 6 4.5162 -0.8386 -2.9523 9 1 4.1865 0.1976 -3.0278 10 6 5.9165 -0.9719 -3.5550 11 6 5.9571 -0.2884 -4.9274 12 6 4.7956 -0.8007 -5.7440 13 7 4.6182 -0.7231 -7.0308 14 7 3.3967 -1.3400 -7.3411 15 1 3.0112 -1.4282 -8.2268 16 6 2.8509 -1.7889 -6.1885 17 6 3.6915 -1.4681 -5.1878 18 6 3.5369 -1.7416 -3.7120 19 6 3.2874 -1.5730 0.6603 20 6 2.0774 -0.7938 1.2087 21 1 1.3217 -1.4835 1.5844 22 6 2.5199 0.1638 2.3169 23 6 3.0095 -0.6421 3.5219 24 7 3.4326 0.2747 4.5833 25 6 3.9112 -0.2218 5.7663 26 1 3.9771 -1.2892 5.9168 27 6 4.3116 0.6470 6.7722 28 7 4.2318 1.9479 6.5887 29 14 4.9652 -0.0302 8.3858 30 1 4.9554 -1.5145 8.3399 31 1 6.3548 0.4487 8.5971 32 1 4.1055 0.4367 9.5030 33 1 -0.3633 0.4620 0.9180 34 1 -0.3633 0.5641 -0.8590 35 1 -0.3634 -1.0260 -0.0589 36 1 2.1486 -0.1483 -2.0881 37 1 1.4546 -1.6591 -1.4151 38 1 6.1633 -2.0276 -3.6684 39 1 6.6418 -0.4990 -2.8929 40 1 6.8940 -0.5281 -5.4301 41 1 5.8714 0.7912 -4.8032 42 1 1.9085 -2.3069 -6.0884 43 1 3.7662 -2.7870 -3.5057 44 1 2.5156 -1.5210 -3.4014 45 1 3.1123 -2.6447 0.7544 46 1 4.1895 -1.2951 1.2051 47 1 3.3286 0.7957 1.9497 48 1 1.6778 0.7882 2.6153 49 1 2.2008 -1.2740 3.8891 50 1 3.8516 -1.2665 3.2235 51 1 3.3731 1.2334 4.4483 52 1 4.5113 2.5550 7.2918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104901874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = 8.722576 kcal Electronic energy + Delta-G solvation = -30503.334982 eV Core-core repulsion = 26502.585103 eV Total energy + Delta-G solvation = -4000.749879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.44026 -41.27585 -39.34491 -37.08452 -36.86208 -34.62446 -33.50047 -33.11280 -31.77991 -31.42470 -30.01113 -28.27105 -27.25131 -26.09974 -25.48212 -24.22136 -23.21321 -21.98500 -21.87655 -20.84119 -20.24771 -19.67720 -19.16016 -18.54538 -17.99464 -17.20763 -16.66298 -16.64760 -16.23575 -15.79694 -15.56613 -15.42920 -15.17256 -14.95464 -14.79189 -14.60189 -14.37744 -14.13155 -13.84061 -13.68621 -13.63239 -13.45689 -13.17689 -13.00274 -12.89347 -12.85015 -12.69035 -12.67782 -12.40919 -12.26904 -12.07799 -11.99535 -11.89109 -11.86967 -11.57333 -11.43484 -11.29565 -11.14872 -10.94414 -10.75077 -10.32189 -9.66117 -9.32998 -9.01859 -7.97452 -5.26592 1.02326 1.45191 1.46981 1.57037 1.63336 1.78973 1.98311 2.06227 2.54334 3.32264 3.36038 3.53729 3.61772 3.69100 3.78673 3.85307 3.91846 4.12280 4.17111 4.30474 4.32426 4.34708 4.39562 4.46826 4.51134 4.53836 4.63150 4.63651 4.71576 4.76849 4.79148 4.80887 4.81690 4.93498 4.97670 5.01722 5.02194 5.07404 5.15017 5.23328 5.24749 5.27752 5.32985 5.34229 5.39184 5.45562 5.48560 5.63462 5.71175 6.25544 6.53401 6.60700 6.76850 7.17884 7.30940 8.07580 8.30394 9.26470 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002018 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.537249 B =13874.879205 C =14777.743372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.528 3.472 7 O -0.591 6.591 8 C -0.090 4.090 9 H 0.113 0.887 10 C -0.093 4.093 11 C -0.035 4.035 12 C 0.069 3.931 13 N -0.329 5.329 14 N -0.479 5.479 15 H 0.452 0.548 16 C 0.083 3.917 17 C -0.257 4.257 18 C -0.022 4.022 19 C 0.105 3.895 20 C -0.081 4.081 21 H 0.103 0.897 22 C -0.102 4.102 23 C 0.149 3.851 24 N -0.749 5.749 25 C -0.247 4.247 26 H 0.074 0.926 27 C -0.079 4.079 28 N -0.970 5.970 29 Si 0.976 3.024 30 H -0.266 1.266 31 H -0.294 1.294 32 H -0.289 1.289 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.218 0.782 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.044 0.956 48 H 0.069 0.931 49 H 0.026 0.974 50 H 0.011 0.989 51 H 0.373 0.627 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -7.801 -32.119 34.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.319 3.681 7 O -0.472 6.472 8 C -0.111 4.111 9 H 0.131 0.869 10 C -0.131 4.131 11 C -0.074 4.074 12 C -0.099 4.099 13 N -0.152 5.152 14 N -0.189 5.189 15 H 0.298 0.702 16 C -0.064 4.064 17 C -0.268 4.268 18 C -0.060 4.060 19 C -0.018 4.018 20 C -0.101 4.101 21 H 0.121 0.879 22 C -0.140 4.140 23 C 0.023 3.977 24 N -0.392 5.392 25 C -0.379 4.379 26 H 0.092 0.908 27 C -0.271 4.271 28 N -0.621 5.621 29 Si 0.804 3.196 30 H -0.191 1.191 31 H -0.221 1.221 32 H -0.216 1.216 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.235 0.765 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.029 0.971 51 H 0.204 0.796 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.128 -7.764 -32.925 35.312 hybrid contribution 0.433 -0.043 1.655 1.712 sum -9.695 -7.808 -31.270 33.656 Atomic orbital electron populations 1.21710 0.91802 1.03197 1.02617 1.22290 0.97586 0.98941 0.92950 0.90795 1.22972 0.81212 0.99919 0.97810 1.48906 1.09603 1.65350 1.11160 1.20913 0.81447 0.76679 0.89107 1.90707 1.31894 1.50040 1.74531 1.21276 0.98596 1.02747 0.88483 0.86925 1.21307 0.95358 1.01419 0.95047 1.20121 0.94253 1.00655 0.92365 1.22599 0.97684 0.98435 0.91152 1.76961 1.01453 1.20874 1.15908 1.46404 1.16205 1.46309 1.09965 0.70180 1.22660 1.00289 0.98532 0.84923 1.20120 0.97626 1.12123 0.96929 1.19966 0.99430 0.98341 0.88298 1.22124 0.98536 0.99395 0.81720 1.22077 0.96252 0.96995 0.94758 0.87898 1.21630 1.00271 0.97860 0.94233 1.20894 0.95928 0.92707 0.88177 1.42629 1.77223 1.05338 1.13973 1.19694 1.33360 0.92317 0.92499 0.90766 1.25627 1.03422 0.95703 1.02344 1.69827 1.55587 1.02031 1.34637 0.85038 0.77157 0.77950 0.79420 1.19058 1.22083 1.21554 0.92965 0.90619 0.90937 0.87651 0.87864 0.92085 0.91292 0.89383 0.88742 0.76504 0.91497 0.87702 0.90948 0.93807 0.93733 0.91280 0.95654 0.97089 0.79561 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.16 71.98 0.66 -0.80 16 2 C -0.10 -1.51 3.19 -9.70 -0.03 -1.54 16 3 H 0.07 1.34 7.86 -2.39 -0.02 1.32 16 4 C 0.10 1.23 4.79 86.61 0.42 1.64 16 5 N -0.62 -13.32 3.28 -810.08 -2.66 -15.98 16 6 C 0.53 13.39 7.23 87.66 0.63 14.03 16 7 O -0.59 -21.29 16.10 -3.02 -0.05 -21.34 16 8 C -0.09 -1.54 1.78 -11.41 -0.02 -1.56 16 9 H 0.11 1.63 7.86 -2.38 -0.02 1.61 16 10 C -0.09 -1.77 4.65 30.73 0.14 -1.63 16 11 C -0.03 -0.56 6.31 30.05 0.19 -0.37 16 12 C 0.07 1.21 7.10 43.44 0.31 1.52 16 13 N -0.33 -6.15 12.68 -47.13 -0.60 -6.75 16 14 N -0.48 -5.16 7.37 -57.88 -0.43 -5.59 16 15 H 0.45 1.92 8.96 -213.18 -1.91 0.01 16 16 C 0.08 0.68 11.95 83.33 1.00 1.67 16 17 C -0.26 -3.40 5.89 -20.09 -0.12 -3.51 16 18 C -0.02 -0.26 5.18 30.02 0.16 -0.11 16 19 C 0.11 2.72 6.15 86.53 0.53 3.25 16 20 C -0.08 -1.80 2.61 -9.90 -0.03 -1.83 16 21 H 0.10 1.99 7.85 -2.39 -0.02 1.97 16 22 C -0.10 -3.22 4.53 30.60 0.14 -3.08 16 23 C 0.15 6.16 6.08 86.38 0.53 6.68 16 24 N -0.75 -40.11 5.60 -343.45 -1.92 -42.04 16 25 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 26 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 27 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 28 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 29 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 30 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 31 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 32 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 36 H 0.11 0.82 6.39 -2.39 -0.02 0.81 16 37 H 0.10 0.75 7.96 -2.39 -0.02 0.73 16 38 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 39 H 0.07 1.53 7.68 -2.39 -0.02 1.51 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 42 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 43 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 44 H 0.10 0.70 5.61 -2.39 -0.01 0.68 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.51 6.64 -2.39 -0.02 1.49 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.01 0.48 6.88 -2.39 -0.02 0.47 16 51 H 0.37 21.09 7.67 -92.71 -0.71 20.38 16 52 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -83.10 406.10 0.77 -82.33 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.69 Total: 24.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.81 Total: -3.50 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -5.33 Total: -131.31 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -83.10 0.77 -82.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104901874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.052 kcal (2) G-P(sol) polarization free energy of solvation -83.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds