Wall clock time and date at job start Wed Apr 1 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.64427 * 2 1 4 4 C 1.54324 * 110.72098 * 236.86123 * 2 1 3 5 5 N 1.47022 * 107.27252 * 219.27061 * 4 2 1 6 6 C 1.34783 * 125.65111 * 178.97957 * 5 4 2 7 7 O 1.21625 * 119.99922 * 174.80169 * 6 5 4 8 8 C 1.47159 * 119.99589 * 354.79413 * 6 5 4 9 9 C 1.38098 * 126.93739 * 99.28592 * 8 6 5 10 10 C 1.39535 * 105.70814 * 179.89829 * 9 8 6 11 11 N 1.31070 * 107.59604 * 0.37611 * 10 9 8 12 12 N 1.28440 * 110.96890 * 359.75149 * 11 10 9 13 13 C 1.46498 * 125.19682 * 179.97438 * 12 11 10 14 14 C 1.51273 * 109.37349 * 180.25784 * 10 9 8 15 15 C 1.54619 * 105.18557 * 342.53183 * 14 10 9 16 16 C 1.50857 * 144.41100 * 359.97438 * 9 8 6 17 17 C 1.47423 * 108.70343 * 358.93643 * 5 4 2 18 18 C 1.54914 * 104.83068 * 24.12897 * 17 5 4 19 19 H 1.09000 * 110.99998 * 81.06658 * 18 17 5 20 20 C 1.52998 * 111.00624 * 204.91316 * 18 17 5 21 21 C 1.53001 * 109.47440 * 287.20134 * 20 18 17 22 22 N 1.46492 * 109.47529 * 179.97438 * 21 20 18 23 23 C 1.36934 * 120.00274 * 179.97438 * 22 21 20 24 24 H 1.07997 * 119.99869 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99775 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00339 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99702 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47190 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46975 * 120.00351 * 27 25 23 30 30 H 1.48499 * 109.47508 * 240.00095 * 27 25 23 31 31 H 1.08991 * 109.47398 * 179.29406 * 1 2 3 32 32 H 1.08998 * 109.47052 * 299.30336 * 1 2 3 33 33 H 1.09003 * 109.46765 * 59.29756 * 1 2 3 34 34 H 1.09003 * 109.88302 * 338.68374 * 4 2 1 35 35 H 1.09006 * 109.88618 * 99.85098 * 4 2 1 36 36 H 1.08999 * 109.47127 * 274.97379 * 13 12 11 37 37 H 1.08994 * 109.47406 * 34.97863 * 13 12 11 38 38 H 1.09002 * 109.46804 * 154.97718 * 13 12 11 39 39 H 1.08997 * 110.28173 * 102.03508 * 14 10 9 40 40 H 1.09007 * 110.28251 * 224.12780 * 14 10 9 41 41 H 1.09003 * 111.08522 * 268.31927 * 15 14 10 42 42 H 1.09006 * 110.74610 * 144.88280 * 15 14 10 43 43 H 1.09002 * 110.30234 * 315.99878 * 16 9 8 44 44 H 1.09001 * 110.29972 * 78.05113 * 16 9 8 45 45 H 1.08999 * 110.36849 * 142.97179 * 17 5 4 46 46 H 1.08999 * 110.36939 * 265.29256 * 17 5 4 47 47 H 1.09003 * 109.46565 * 47.19439 * 20 18 17 48 48 H 1.08997 * 109.46977 * 167.19807 * 20 18 17 49 49 H 1.09005 * 109.47068 * 300.00097 * 21 20 18 50 50 H 1.09005 * 109.47147 * 59.99248 * 21 20 18 51 51 H 0.97000 * 119.99593 * 359.97438 * 22 21 20 52 52 H 0.96997 * 120.00152 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2470 -1.5462 -0.7427 6 6 3.9957 -2.3767 -1.4952 7 8 5.0005 -2.8797 -1.0296 8 6 3.5973 -2.6751 -2.8801 9 6 4.1018 -2.1016 -4.0306 10 6 3.4175 -2.7066 -5.0855 11 7 2.5711 -3.5638 -4.5691 12 7 2.6493 -3.5714 -3.2871 13 6 1.8445 -4.4118 -2.3971 14 6 3.9143 -2.1391 -6.3969 15 6 4.6384 -0.8255 -6.0213 16 6 5.0881 -1.0951 -4.5689 17 6 3.4674 -1.2456 0.6836 18 6 2.0828 -0.7949 1.2124 19 1 1.4514 -1.6547 1.4365 20 6 2.2313 0.1081 2.4385 21 6 2.6583 -0.7334 3.6429 22 7 2.8011 0.1312 4.8168 23 6 3.1775 -0.4040 6.0197 24 1 3.3687 -1.4636 6.1031 25 6 3.3123 0.4154 7.1322 26 7 3.0779 1.7065 7.0309 27 14 3.8251 -0.3149 8.7732 28 1 4.0264 -1.7784 8.6225 29 1 5.0931 0.3153 9.2209 30 1 2.7640 -0.0619 9.7809 31 1 -0.3634 -1.0275 -0.0127 32 1 -0.3633 0.5030 0.8962 33 1 -0.3633 0.5247 -0.8837 34 1 1.3140 -1.4753 -1.5782 35 1 2.3712 -0.0991 -1.9992 36 1 0.8909 -3.9224 -2.1992 37 1 1.6661 -5.3768 -2.8714 38 1 2.3778 -4.5615 -1.4583 39 1 4.6019 -2.8371 -6.8743 40 1 3.0745 -1.9233 -7.0575 41 1 3.9567 0.0239 -6.0637 42 1 5.4997 -0.6608 -6.6687 43 1 5.0481 -0.1762 -3.9839 44 1 6.0965 -1.5086 -4.5542 45 1 3.8031 -2.1380 1.2119 46 1 4.1955 -0.4420 0.7940 47 1 2.9869 0.8684 2.2404 48 1 1.2776 0.5905 2.6521 49 1 1.9028 -1.4938 3.8411 50 1 3.6121 -1.2159 3.4292 51 1 2.6291 1.0829 4.7420 52 1 3.1717 2.2790 7.8083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104901902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:32 Heat of formation + Delta-G solvation = 55.878188 kcal Electronic energy + Delta-G solvation = -30714.398309 eV Core-core repulsion = 26715.693251 eV Total energy + Delta-G solvation = -3998.705058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.96985 -40.23382 -38.13782 -37.25964 -35.20392 -33.45101 -32.51990 -32.12313 -31.19153 -30.17212 -28.03338 -27.21745 -26.76530 -26.58012 -24.48934 -23.01709 -22.29136 -21.41457 -20.68345 -20.58087 -20.21537 -19.04298 -17.61374 -17.18635 -16.92323 -16.25727 -15.98528 -15.72515 -15.38311 -14.79283 -14.68504 -14.44142 -14.16811 -13.90692 -13.42145 -13.34504 -13.28197 -13.22087 -13.09899 -13.08602 -12.96585 -12.87734 -12.59146 -12.37116 -12.17547 -11.79475 -11.51093 -11.49294 -11.35671 -11.21428 -11.08542 -10.86833 -10.70694 -10.64939 -10.52405 -10.32378 -10.29585 -9.97044 -9.68547 -9.26105 -8.91688 -8.87718 -8.84482 -6.92534 -5.77075 -3.05644 1.37309 1.81260 2.31202 2.40188 2.78042 3.43305 3.49127 3.51286 3.55905 4.01121 4.26411 4.42584 4.46353 4.49221 4.60253 4.62636 4.66765 4.70876 4.79877 4.93509 4.93891 5.00652 5.17115 5.23573 5.26161 5.31190 5.40138 5.40449 5.44370 5.48449 5.56381 5.58334 5.64435 5.67144 5.68707 5.74547 5.79678 5.85596 5.89287 5.92765 5.98635 6.06883 6.21386 6.22348 6.33752 6.34282 6.52338 6.81128 6.85056 7.16148 7.70562 7.76159 7.80944 8.42104 9.53220 10.11212 10.45494 11.45963 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002056 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.289057 B =13614.627720 C =13768.537485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.107 3.893 5 N -0.607 5.607 6 C 0.605 3.395 7 O -0.518 6.518 8 C -0.003 4.003 9 C -0.183 4.183 10 C 0.007 3.993 11 N -0.267 5.267 12 N -0.273 5.273 13 C 0.090 3.910 14 C -0.025 4.025 15 C -0.115 4.115 16 C -0.045 4.045 17 C 0.110 3.890 18 C -0.089 4.089 19 H 0.087 0.913 20 C -0.114 4.114 21 C 0.152 3.848 22 N -0.734 5.734 23 C -0.238 4.238 24 H 0.071 0.929 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -5.828 -29.115 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.016 4.016 5 N -0.340 5.340 6 C 0.390 3.610 7 O -0.392 6.392 8 C -0.130 4.130 9 C -0.194 4.194 10 C -0.153 4.153 11 N -0.097 5.097 12 N -0.061 5.061 13 C -0.050 4.050 14 C -0.064 4.064 15 C -0.152 4.152 16 C -0.083 4.083 17 C -0.012 4.012 18 C -0.108 4.108 19 H 0.105 0.895 20 C -0.152 4.152 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.212 4.212 26 N -0.583 5.583 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.375 -7.189 -28.930 30.129 hybrid contribution 0.677 0.393 1.292 1.511 sum -3.698 -6.796 -27.638 28.700 Atomic orbital electron populations 1.21742 0.93529 1.02095 1.02460 1.22294 0.96546 0.99716 0.93319 0.89170 1.22161 0.87168 0.94676 0.97573 1.48475 1.29666 1.44020 1.11883 1.16627 0.82884 0.78917 0.82622 1.90878 1.24500 1.52007 1.71774 1.20388 0.98709 0.99929 0.93991 1.21113 1.03456 1.03747 0.91064 1.22732 0.96926 0.97440 0.98166 1.72657 1.22918 1.22332 0.91787 1.45675 1.27444 1.29472 1.03550 1.22174 0.95248 0.95039 0.92500 1.20453 0.99495 0.95765 0.90722 1.22419 1.00435 0.96852 0.95542 1.20381 0.96579 0.96260 0.95052 1.22516 0.97967 1.01914 0.78757 1.22437 0.95038 0.98899 0.94467 0.89514 1.21686 1.02262 0.97999 0.93263 1.20673 0.97242 0.93147 0.86518 1.42365 1.82906 1.07297 1.05251 1.19280 1.37809 0.93051 0.86775 0.91150 1.24752 1.02686 0.95565 0.98150 1.69667 1.56012 1.03103 1.29500 0.86114 0.77818 0.78099 0.84168 1.20549 1.21839 1.21875 0.92537 0.91356 0.92514 0.91793 0.91300 0.89489 0.88186 0.88786 0.89624 0.90314 0.90543 0.89783 0.90871 0.90074 0.89771 0.90488 0.91501 0.91157 0.96485 0.96342 0.78317 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.15 37.16 0.34 -0.77 16 2 C -0.10 -0.91 3.01 -88.79 -0.27 -1.18 16 3 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 4 C 0.11 1.00 6.07 -3.06 -0.02 0.98 16 5 N -0.61 -7.20 3.33 -171.88 -0.57 -7.77 16 6 C 0.60 8.40 7.03 -12.64 -0.09 8.31 16 7 O -0.52 -9.12 17.41 5.26 0.09 -9.02 16 8 C 0.00 -0.03 5.89 -82.14 -0.48 -0.52 16 9 C -0.18 -2.12 7.02 -104.11 -0.73 -2.86 16 10 C 0.01 0.07 8.13 -82.15 -0.67 -0.60 16 11 N -0.27 -3.22 11.91 33.79 0.40 -2.81 16 12 N -0.27 -3.08 3.75 -63.95 -0.24 -3.32 16 13 C 0.09 0.68 11.22 59.85 0.67 1.35 16 14 C -0.03 -0.18 6.77 -26.75 -0.18 -0.36 16 15 C -0.11 -0.67 7.08 -25.14 -0.18 -0.85 16 16 C -0.04 -0.39 6.75 -27.07 -0.18 -0.57 16 17 C 0.11 1.39 5.84 -2.53 -0.01 1.37 16 18 C -0.09 -1.01 2.46 -88.47 -0.22 -1.22 16 19 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 20 C -0.11 -1.65 4.84 -26.73 -0.13 -1.78 16 21 C 0.15 2.94 6.16 -4.05 -0.02 2.92 16 22 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 23 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 24 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 26 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 27 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.55 7.80 -51.93 -0.41 0.14 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 46 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 47 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 51 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 52 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 419.86 15.07 6.33 6.33 Total: -1.00 -35.40 419.86 -10.11 -45.51 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.06 Total: 3.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.42 Total: -3.19 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.02 Total: -60.37 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.40 -10.11 -45.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104901902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.388 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds