Wall clock time and date at job start Wed Apr 1 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.64427 * 2 1 4 4 C 1.54324 * 110.72098 * 236.86123 * 2 1 3 5 5 N 1.47022 * 107.27252 * 219.27061 * 4 2 1 6 6 C 1.34783 * 125.65111 * 178.97957 * 5 4 2 7 7 O 1.21625 * 119.99922 * 174.80169 * 6 5 4 8 8 C 1.47159 * 119.99589 * 354.79413 * 6 5 4 9 9 C 1.38098 * 126.93739 * 99.28592 * 8 6 5 10 10 C 1.39535 * 105.70814 * 179.89829 * 9 8 6 11 11 N 1.31070 * 107.59604 * 0.37611 * 10 9 8 12 12 N 1.28440 * 110.96890 * 359.75149 * 11 10 9 13 13 C 1.46498 * 125.19682 * 179.97438 * 12 11 10 14 14 C 1.51273 * 109.37349 * 180.25784 * 10 9 8 15 15 C 1.54619 * 105.18557 * 342.53183 * 14 10 9 16 16 C 1.50857 * 144.41100 * 359.97438 * 9 8 6 17 17 C 1.47423 * 108.70343 * 358.93643 * 5 4 2 18 18 C 1.54914 * 104.83068 * 24.12897 * 17 5 4 19 19 H 1.09000 * 110.99998 * 81.06658 * 18 17 5 20 20 C 1.52998 * 111.00624 * 204.91316 * 18 17 5 21 21 C 1.53001 * 109.47440 * 287.20134 * 20 18 17 22 22 N 1.46492 * 109.47529 * 179.97438 * 21 20 18 23 23 C 1.36934 * 120.00274 * 179.97438 * 22 21 20 24 24 H 1.07997 * 119.99869 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99775 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00339 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99702 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47190 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46975 * 120.00351 * 27 25 23 30 30 H 1.48499 * 109.47508 * 240.00095 * 27 25 23 31 31 H 1.08991 * 109.47398 * 179.29406 * 1 2 3 32 32 H 1.08998 * 109.47052 * 299.30336 * 1 2 3 33 33 H 1.09003 * 109.46765 * 59.29756 * 1 2 3 34 34 H 1.09003 * 109.88302 * 338.68374 * 4 2 1 35 35 H 1.09006 * 109.88618 * 99.85098 * 4 2 1 36 36 H 1.08999 * 109.47127 * 274.97379 * 13 12 11 37 37 H 1.08994 * 109.47406 * 34.97863 * 13 12 11 38 38 H 1.09002 * 109.46804 * 154.97718 * 13 12 11 39 39 H 1.08997 * 110.28173 * 102.03508 * 14 10 9 40 40 H 1.09007 * 110.28251 * 224.12780 * 14 10 9 41 41 H 1.09003 * 111.08522 * 268.31927 * 15 14 10 42 42 H 1.09006 * 110.74610 * 144.88280 * 15 14 10 43 43 H 1.09002 * 110.30234 * 315.99878 * 16 9 8 44 44 H 1.09001 * 110.29972 * 78.05113 * 16 9 8 45 45 H 1.08999 * 110.36849 * 142.97179 * 17 5 4 46 46 H 1.08999 * 110.36939 * 265.29256 * 17 5 4 47 47 H 1.09003 * 109.46565 * 47.19439 * 20 18 17 48 48 H 1.08997 * 109.46977 * 167.19807 * 20 18 17 49 49 H 1.09005 * 109.47068 * 300.00097 * 21 20 18 50 50 H 1.09005 * 109.47147 * 59.99248 * 21 20 18 51 51 H 0.97000 * 119.99593 * 359.97438 * 22 21 20 52 52 H 0.96997 * 120.00152 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2470 -1.5462 -0.7427 6 6 3.9957 -2.3767 -1.4952 7 8 5.0005 -2.8797 -1.0296 8 6 3.5973 -2.6751 -2.8801 9 6 4.1018 -2.1016 -4.0306 10 6 3.4175 -2.7066 -5.0855 11 7 2.5711 -3.5638 -4.5691 12 7 2.6493 -3.5714 -3.2871 13 6 1.8445 -4.4118 -2.3971 14 6 3.9143 -2.1391 -6.3969 15 6 4.6384 -0.8255 -6.0213 16 6 5.0881 -1.0951 -4.5689 17 6 3.4674 -1.2456 0.6836 18 6 2.0828 -0.7949 1.2124 19 1 1.4514 -1.6547 1.4365 20 6 2.2313 0.1081 2.4385 21 6 2.6583 -0.7334 3.6429 22 7 2.8011 0.1312 4.8168 23 6 3.1775 -0.4040 6.0197 24 1 3.3687 -1.4636 6.1031 25 6 3.3123 0.4154 7.1322 26 7 3.0779 1.7065 7.0309 27 14 3.8251 -0.3149 8.7732 28 1 4.0264 -1.7784 8.6225 29 1 5.0931 0.3153 9.2209 30 1 2.7640 -0.0619 9.7809 31 1 -0.3634 -1.0275 -0.0127 32 1 -0.3633 0.5030 0.8962 33 1 -0.3633 0.5247 -0.8837 34 1 1.3140 -1.4753 -1.5782 35 1 2.3712 -0.0991 -1.9992 36 1 0.8909 -3.9224 -2.1992 37 1 1.6661 -5.3768 -2.8714 38 1 2.3778 -4.5615 -1.4583 39 1 4.6019 -2.8371 -6.8743 40 1 3.0745 -1.9233 -7.0575 41 1 3.9567 0.0239 -6.0637 42 1 5.4997 -0.6608 -6.6687 43 1 5.0481 -0.1762 -3.9839 44 1 6.0965 -1.5086 -4.5542 45 1 3.8031 -2.1380 1.2119 46 1 4.1955 -0.4420 0.7940 47 1 2.9869 0.8684 2.2404 48 1 1.2776 0.5905 2.6521 49 1 1.9028 -1.4938 3.8411 50 1 3.6121 -1.2159 3.4292 51 1 2.6291 1.0829 4.7420 52 1 3.1717 2.2790 7.8083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104901902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:31 Heat of formation + Delta-G solvation = 34.026458 kcal Electronic energy + Delta-G solvation = -30715.345871 eV Core-core repulsion = 26715.693251 eV Total energy + Delta-G solvation = -3999.652620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.77778 -41.24257 -39.22997 -37.89767 -36.90513 -34.77855 -33.55047 -33.21601 -32.13216 -31.61378 -28.99390 -28.27631 -27.54202 -27.29416 -26.05233 -24.39091 -23.37061 -22.32805 -21.72213 -21.38493 -21.17745 -19.91749 -19.17590 -18.46911 -17.89013 -17.18625 -16.82485 -16.74258 -16.65046 -15.95118 -15.85151 -15.45626 -15.40092 -15.09405 -14.86232 -14.61001 -14.33344 -14.13159 -13.91397 -13.79762 -13.74414 -13.61550 -13.54317 -13.36376 -13.12272 -12.91162 -12.75660 -12.63894 -12.55068 -12.32122 -12.08652 -12.04460 -11.94154 -11.82537 -11.68366 -11.63752 -11.51567 -11.39470 -11.25989 -10.94179 -10.12228 -9.93245 -9.60507 -9.00969 -7.97121 -5.25680 0.48962 0.90997 1.45469 1.46100 1.46919 1.52464 1.56976 1.87105 2.54467 2.86199 3.10466 3.36606 3.40870 3.52733 3.66579 3.86562 3.88264 4.04469 4.13767 4.17185 4.19345 4.20965 4.21847 4.26910 4.39797 4.41434 4.47390 4.53228 4.57326 4.65650 4.66974 4.74848 4.79381 4.82835 4.83546 4.87043 4.96716 4.99872 5.05012 5.05413 5.11316 5.21110 5.24657 5.33264 5.37894 5.41154 5.45960 5.47957 5.48889 5.76423 6.16596 6.26280 6.71146 6.98231 7.32255 8.08868 8.31670 9.26557 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002056 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.289057 B =13614.627720 C =13768.537485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.109 3.891 5 N -0.600 5.600 6 C 0.608 3.392 7 O -0.567 6.567 8 C -0.024 4.024 9 C -0.198 4.198 10 C -0.003 4.003 11 N -0.283 5.283 12 N -0.274 5.274 13 C 0.082 3.918 14 C -0.025 4.025 15 C -0.102 4.102 16 C -0.050 4.050 17 C 0.109 3.891 18 C -0.077 4.077 19 H 0.095 0.905 20 C -0.099 4.099 21 C 0.149 3.851 22 N -0.748 5.748 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.077 4.077 26 N -0.968 5.968 27 Si 0.973 3.027 28 H -0.268 1.268 29 H -0.293 1.293 30 H -0.291 1.291 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.014 0.986 51 H 0.375 0.625 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 -5.900 -31.019 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.013 4.013 5 N -0.331 5.331 6 C 0.394 3.606 7 O -0.445 6.445 8 C -0.152 4.152 9 C -0.209 4.209 10 C -0.162 4.162 11 N -0.114 5.114 12 N -0.062 5.062 13 C -0.057 4.057 14 C -0.064 4.064 15 C -0.140 4.140 16 C -0.088 4.088 17 C -0.013 4.013 18 C -0.096 4.096 19 H 0.113 0.887 20 C -0.137 4.137 21 C 0.023 3.977 22 N -0.390 5.390 23 C -0.377 4.377 24 H 0.091 0.909 25 C -0.269 4.269 26 N -0.619 5.619 27 Si 0.802 3.198 28 H -0.193 1.193 29 H -0.220 1.220 30 H -0.218 1.218 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.039 0.961 50 H 0.032 0.968 51 H 0.207 0.793 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.537 -7.279 -30.866 32.193 hybrid contribution 1.024 0.373 1.845 2.142 sum -4.513 -6.906 -29.022 30.172 Atomic orbital electron populations 1.21735 0.91990 1.02802 1.03005 1.22252 0.97654 0.99340 0.91551 0.88832 1.22312 0.86381 0.94821 0.97768 1.48486 1.29898 1.43392 1.11364 1.16823 0.82250 0.78451 0.83099 1.90841 1.26700 1.54004 1.72923 1.20324 1.00150 1.01336 0.93392 1.21641 1.03931 1.04357 0.90965 1.23460 0.96224 0.96773 0.99713 1.72628 1.23705 1.22950 0.92114 1.45968 1.27333 1.29291 1.03638 1.22442 0.95610 0.95720 0.91946 1.20658 1.00262 0.96257 0.89254 1.22437 1.01346 0.96506 0.93713 1.20548 0.95912 0.95474 0.96894 1.22444 0.98637 1.00872 0.79386 1.22285 0.94465 0.98891 0.93996 0.88719 1.21509 1.02126 0.97612 0.92427 1.20858 0.97074 0.93260 0.86530 1.42598 1.82749 1.07536 1.06163 1.19656 1.36775 0.93256 0.88050 0.90932 1.25573 1.03599 0.96058 1.01660 1.69809 1.57575 1.04284 1.30222 0.85086 0.77036 0.77901 0.79824 1.19254 1.21999 1.21751 0.91821 0.91894 0.90881 0.90352 0.90473 0.87346 0.86709 0.89382 0.88560 0.88794 0.89579 0.87383 0.90922 0.90333 0.91507 0.91357 0.91897 0.90615 0.96146 0.96825 0.79314 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.15 71.98 0.66 -1.11 16 2 C -0.09 -1.44 3.01 -9.61 -0.03 -1.46 16 3 H 0.09 1.50 8.04 -2.38 -0.02 1.49 16 4 C 0.11 1.83 6.07 86.73 0.53 2.36 16 5 N -0.60 -14.06 3.33 -815.95 -2.71 -16.77 16 6 C 0.61 17.22 7.03 86.58 0.61 17.83 16 7 O -0.57 -20.92 17.41 -4.11 -0.07 -20.99 16 8 C -0.02 -0.61 5.89 40.70 0.24 -0.37 16 9 C -0.20 -4.47 7.02 -19.54 -0.14 -4.61 16 10 C 0.00 -0.06 8.13 43.17 0.35 0.29 16 11 N -0.28 -6.54 11.91 -47.02 -0.56 -7.10 16 12 N -0.27 -5.98 3.75 -356.24 -1.34 -7.32 16 13 C 0.08 1.16 11.22 127.77 1.43 2.59 16 14 C -0.03 -0.30 6.77 30.58 0.21 -0.09 16 15 C -0.10 -0.93 7.08 31.63 0.22 -0.71 16 16 C -0.05 -0.81 6.75 30.38 0.21 -0.61 16 17 C 0.11 2.76 5.84 86.86 0.51 3.27 16 18 C -0.08 -1.66 2.46 -9.40 -0.02 -1.68 16 19 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 20 C -0.10 -2.80 4.84 30.59 0.15 -2.65 16 21 C 0.15 5.78 6.16 86.38 0.53 6.32 16 22 N -0.75 -38.11 5.60 -343.46 -1.92 -40.04 16 23 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 24 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 25 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 26 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 27 Si 0.97 46.62 29.55 68.60 2.03 48.64 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 30 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 31 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.14 7.80 -2.39 -0.02 1.12 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.34 7.66 -2.39 -0.02 1.32 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 46 H 0.07 1.86 7.91 -2.39 -0.02 1.84 16 47 H 0.06 1.85 7.96 -2.39 -0.02 1.83 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.01 0.55 7.75 -2.38 -0.02 0.53 16 51 H 0.37 20.07 7.67 -92.71 -0.71 19.36 16 52 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -77.58 419.86 2.66 -74.93 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.19 Total: 25.49 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.76 Total: 2.29 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -6.25 Total: -130.36 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.99 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -77.58 2.66 -74.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104901902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.952 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds