Wall clock time and date at job start Wed Apr 1 2020 04:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.29228 * 2 1 4 4 C 1.54001 * 110.32586 * 237.86259 * 2 1 3 5 5 N 1.47486 * 107.08624 * 242.30890 * 4 2 1 6 6 C 1.34773 * 127.03361 * 154.51425 * 5 4 2 7 7 O 1.21598 * 120.00226 * 185.29196 * 6 5 4 8 8 C 1.47429 * 120.00225 * 5.29582 * 6 5 4 9 9 C 1.39983 * 120.60754 * 34.96228 * 8 6 5 10 10 C 1.38328 * 118.36857 * 179.70788 * 9 8 6 11 11 C 1.38372 * 119.50561 * 0.56062 * 10 9 8 12 12 N 1.31848 * 121.22241 * 359.42579 * 11 10 9 13 13 C 1.32431 * 121.77063 * 0.27526 * 12 11 10 14 14 N 1.38268 * 119.82446 * 180.02562 * 13 12 11 15 15 C 1.46900 * 110.99949 * 295.00150 * 14 13 12 16 16 C 1.46900 * 111.00186 * 58.96071 * 14 13 12 17 17 C 1.48113 * 105.93038 * 334.78188 * 5 4 2 18 18 C 1.54595 * 103.42430 * 39.02473 * 17 5 4 19 19 H 1.08998 * 110.57936 * 81.16960 * 18 17 5 20 20 C 1.53005 * 110.83110 * 204.44462 * 18 17 5 21 21 C 1.52995 * 109.47445 * 288.55686 * 20 18 17 22 22 N 1.46499 * 109.47334 * 180.02562 * 21 20 18 23 23 C 1.36935 * 119.99876 * 180.02562 * 22 21 20 24 24 H 1.08005 * 120.00026 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99773 * 179.97438 * 23 22 21 26 26 N 1.31618 * 120.00197 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99861 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47285 * 90.00026 * 27 25 23 29 29 H 1.48498 * 109.47358 * 209.99960 * 27 25 23 30 30 H 1.48505 * 109.47246 * 330.00198 * 27 25 23 31 31 H 1.09006 * 109.47192 * 180.68101 * 1 2 3 32 32 H 1.08997 * 109.47060 * 300.68315 * 1 2 3 33 33 H 1.09001 * 109.46986 * 60.68098 * 1 2 3 34 34 H 1.09005 * 109.91360 * 122.94937 * 4 2 1 35 35 H 1.09000 * 110.07584 * 1.76688 * 4 2 1 36 36 H 1.08000 * 120.81120 * 359.96279 * 9 8 6 37 37 H 1.08001 * 120.24694 * 180.25791 * 10 9 8 38 38 H 1.08001 * 119.39207 * 179.70341 * 11 10 9 39 39 H 1.08998 * 109.46631 * 60.00332 * 15 14 13 40 40 H 1.08998 * 109.46885 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47280 * 300.00691 * 15 14 13 42 42 H 1.09003 * 109.46740 * 54.99651 * 16 14 13 43 43 H 1.08998 * 109.47044 * 174.99935 * 16 14 13 44 44 H 1.09005 * 109.47009 * 294.99824 * 16 14 13 45 45 H 1.09008 * 110.66027 * 157.50485 * 17 5 4 46 46 H 1.08997 * 110.66494 * 280.61663 * 17 5 4 47 47 H 1.09002 * 109.47084 * 48.56326 * 20 18 17 48 48 H 1.09002 * 109.46780 * 168.55569 * 20 18 17 49 49 H 1.09002 * 109.47072 * 300.00703 * 21 20 18 50 50 H 1.09003 * 109.46781 * 59.99865 * 21 20 18 51 51 H 0.96993 * 119.99622 * 0.02562 * 22 21 20 52 52 H 0.96998 * 119.99686 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0860 -1.3447 7 8 3.6324 -3.9908 -0.7639 8 6 2.6326 -3.2641 -2.7431 9 6 2.6670 -2.1914 -3.6417 10 6 2.2570 -2.4118 -4.9444 11 6 1.8177 -3.6700 -5.3168 12 7 1.7927 -4.6679 -4.4555 13 6 2.1794 -4.5138 -3.1983 14 7 2.1370 -5.5883 -2.3291 15 6 0.7538 -6.0286 -2.1036 16 6 2.9686 -6.6954 -2.8196 17 6 3.2816 -1.5368 0.6472 18 6 2.0693 -0.7721 1.2263 19 1 1.3210 -1.4692 1.6032 20 6 2.5114 0.1967 2.3250 21 6 2.9217 -0.5949 3.5682 22 7 3.3444 0.3327 4.6204 23 6 3.7588 -0.1501 5.8329 24 1 3.7744 -1.2149 6.0134 25 6 4.1598 0.7288 6.8296 26 7 4.1412 2.0263 6.6095 27 14 4.7258 0.0701 8.4835 28 1 6.1914 -0.1662 8.4469 29 1 4.4104 1.0598 9.5447 30 1 4.0256 -1.2069 8.7736 31 1 -0.3634 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8112 35 1 1.2353 -1.1172 -1.8377 36 1 3.0091 -1.2166 -3.3268 37 1 2.2750 -1.6068 -5.6640 38 1 1.4935 -3.8389 -6.3331 39 1 0.3088 -6.3287 -3.0523 40 1 0.7494 -6.8749 -1.4167 41 1 0.1769 -5.2092 -1.6749 42 1 3.9830 -6.3373 -2.9959 43 1 2.9885 -7.4920 -2.0759 44 1 2.5514 -7.0782 -3.7511 45 1 3.4980 -2.4223 1.2450 46 1 4.1541 -0.8858 0.5925 47 1 3.3590 0.7841 1.9720 48 1 1.6862 0.8637 2.5748 49 1 2.0740 -1.1823 3.9211 50 1 3.7468 -1.2619 3.3183 51 1 3.3307 1.2889 4.4580 52 1 4.4211 2.6405 7.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105007268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:56 Heat of formation + Delta-G solvation = 32.956698 kcal Electronic energy + Delta-G solvation = -30756.097803 eV Core-core repulsion = 26756.398795 eV Total energy + Delta-G solvation = -3999.699008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25678 -39.84040 -37.85095 -37.20266 -35.12240 -33.55208 -32.61157 -32.04349 -31.01521 -30.10952 -27.86157 -27.29301 -26.66088 -25.38130 -24.92906 -23.79493 -22.44361 -21.94891 -20.77991 -20.04634 -19.90240 -17.60923 -17.43234 -17.15583 -17.02846 -15.92188 -15.74457 -15.45315 -15.37473 -14.76415 -14.60598 -14.32034 -14.22084 -13.89804 -13.69541 -13.48438 -13.42706 -13.19969 -13.15371 -12.99780 -12.84889 -12.49715 -12.34196 -12.29618 -12.11915 -11.97182 -11.68720 -11.35147 -11.18053 -10.99542 -10.79666 -10.59955 -10.44344 -10.32294 -10.27940 -10.24085 -9.94413 -9.87615 -9.62980 -9.36074 -8.84700 -8.82756 -8.68841 -6.87728 -5.72917 -3.01069 0.34373 0.70553 2.66733 2.81782 3.31920 3.37147 3.46976 3.52030 3.53746 3.98114 4.26752 4.30564 4.42143 4.55400 4.61255 4.67161 4.69291 4.72555 4.99357 5.03043 5.07658 5.10515 5.23446 5.27667 5.31111 5.32958 5.37783 5.51061 5.51522 5.54934 5.58836 5.60471 5.62649 5.68002 5.75189 5.81167 5.89975 5.92563 5.96288 6.02702 6.09786 6.21020 6.31795 6.40900 6.48056 6.52020 6.89367 6.92770 6.93622 7.37783 7.49421 7.74688 8.14464 8.46570 9.57508 10.16027 10.50527 11.50191 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002188 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.595709 B =12795.882335 C =13762.034714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.621 5.621 6 C 0.583 3.417 7 O -0.501 6.501 8 C -0.149 4.149 9 C -0.045 4.045 10 C -0.183 4.183 11 C 0.129 3.871 12 N -0.516 5.516 13 C 0.343 3.657 14 N -0.484 5.484 15 C 0.031 3.969 16 C 0.038 3.962 17 C 0.111 3.889 18 C -0.091 4.091 19 H 0.083 0.917 20 C -0.114 4.114 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 -8.689 -28.965 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.356 5.356 6 C 0.370 3.630 7 O -0.374 6.374 8 C -0.156 4.156 9 C -0.071 4.071 10 C -0.203 4.203 11 C -0.030 4.030 12 N -0.228 5.228 13 C 0.114 3.886 14 N -0.206 5.206 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.010 4.010 18 C -0.110 4.110 19 H 0.102 0.898 20 C -0.152 4.152 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.212 4.212 26 N -0.584 5.584 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.127 -10.116 -28.359 31.187 hybrid contribution 0.267 0.729 0.303 0.833 sum -7.861 -9.387 -28.056 30.612 Atomic orbital electron populations 1.21834 0.94132 1.01925 1.02060 1.22170 0.96428 0.99787 0.93821 0.89266 1.22352 0.95241 0.87502 0.96987 1.48711 1.54005 1.14599 1.18274 1.17329 0.79874 0.80807 0.85001 1.90837 1.41098 1.39042 1.66463 1.20706 1.04970 0.94154 0.95720 1.21985 0.93739 0.98530 0.92846 1.22096 1.02083 0.99201 0.96889 1.22767 0.93282 0.88245 0.98706 1.67880 1.16645 1.34785 1.03481 1.19779 0.90854 0.90834 0.87104 1.59874 1.11811 1.07055 1.41908 1.22403 0.86860 1.01367 1.00940 1.22313 0.97092 0.92350 0.99100 1.22571 0.96846 0.99963 0.81650 1.22280 0.97066 0.97297 0.94401 0.89822 1.21719 1.01247 0.97619 0.94632 1.20678 0.96439 0.92804 0.87685 1.42366 1.79084 1.05133 1.11244 1.19252 1.35441 0.92149 0.89955 0.91193 1.24739 1.02556 0.95335 0.98550 1.69660 1.54423 1.00685 1.33662 0.86186 0.78515 0.77612 0.83893 1.21724 1.21804 1.20757 0.92692 0.91761 0.92710 0.91628 0.91006 0.83673 0.83937 0.82360 0.94142 0.90276 0.91572 0.91390 0.90432 0.94254 0.89296 0.90585 0.91632 0.91427 0.96475 0.96270 0.78362 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.90 37.16 0.33 -0.88 16 2 C -0.10 -0.97 3.17 -89.25 -0.28 -1.25 16 3 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 4 C 0.10 0.89 4.92 -2.98 -0.01 0.88 16 5 N -0.62 -7.44 3.29 -171.24 -0.56 -8.01 16 6 C 0.58 8.06 7.41 -12.52 -0.09 7.97 16 7 O -0.50 -8.76 16.05 5.28 0.08 -8.68 16 8 C -0.15 -1.69 5.50 -104.64 -0.58 -2.27 16 9 C -0.04 -0.36 8.31 -38.89 -0.32 -0.68 16 10 C -0.18 -1.12 10.09 -39.50 -0.40 -1.51 16 11 C 0.13 0.93 11.16 -17.50 -0.20 0.74 16 12 N -0.52 -5.29 9.59 -12.20 -0.12 -5.41 16 13 C 0.34 4.02 5.30 -155.18 -0.82 3.19 16 14 N -0.48 -5.84 3.51 -188.74 -0.66 -6.50 16 15 C 0.03 0.31 9.47 60.06 0.57 0.88 16 16 C 0.04 0.40 9.37 60.06 0.56 0.96 16 17 C 0.11 1.46 5.94 -2.32 -0.01 1.45 16 18 C -0.09 -1.11 2.58 -88.93 -0.23 -1.34 16 19 H 0.08 1.09 7.86 -51.93 -0.41 0.69 16 20 C -0.11 -1.72 4.70 -26.73 -0.13 -1.85 16 21 C 0.15 3.05 6.15 -4.04 -0.02 3.02 16 22 N -0.73 -18.89 5.60 -59.91 -0.34 -19.23 16 23 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 24 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 25 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 26 N -0.94 -28.62 13.06 55.49 0.72 -27.89 16 27 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.45 7.05 -51.93 -0.37 0.09 16 35 H 0.07 0.57 6.73 -51.93 -0.35 0.22 16 36 H 0.15 0.90 5.82 -52.49 -0.31 0.60 16 37 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.04 0.38 7.93 -51.93 -0.41 -0.03 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.38 7.95 -51.93 -0.41 -0.04 16 45 H 0.09 1.35 7.79 -51.92 -0.40 0.95 16 46 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 47 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.40 7.67 -51.93 -0.40 0.00 16 51 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 52 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -35.15 416.18 -10.30 -45.45 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.80 Total: 4.39 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.88 Total: 1.79 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.95 Total: -67.04 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.15 -10.30 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105007268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.410 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds