Wall clock time and date at job start Wed Apr 1 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.29228 * 2 1 4 4 C 1.54001 * 110.32586 * 237.86259 * 2 1 3 5 5 N 1.47486 * 107.08624 * 242.30890 * 4 2 1 6 6 C 1.34773 * 127.03361 * 154.51425 * 5 4 2 7 7 O 1.21598 * 120.00226 * 185.29196 * 6 5 4 8 8 C 1.47429 * 120.00225 * 5.29582 * 6 5 4 9 9 C 1.39983 * 120.60754 * 34.96228 * 8 6 5 10 10 C 1.38328 * 118.36857 * 179.70788 * 9 8 6 11 11 C 1.38372 * 119.50561 * 0.56062 * 10 9 8 12 12 N 1.31848 * 121.22241 * 359.42579 * 11 10 9 13 13 C 1.32431 * 121.77063 * 0.27526 * 12 11 10 14 14 N 1.38268 * 119.82446 * 180.02562 * 13 12 11 15 15 C 1.46900 * 110.99949 * 295.00150 * 14 13 12 16 16 C 1.46900 * 111.00186 * 58.96071 * 14 13 12 17 17 C 1.48113 * 105.93038 * 334.78188 * 5 4 2 18 18 C 1.54595 * 103.42430 * 39.02473 * 17 5 4 19 19 H 1.08998 * 110.57936 * 81.16960 * 18 17 5 20 20 C 1.53005 * 110.83110 * 204.44462 * 18 17 5 21 21 C 1.52995 * 109.47445 * 288.55686 * 20 18 17 22 22 N 1.46499 * 109.47334 * 180.02562 * 21 20 18 23 23 C 1.36935 * 119.99876 * 180.02562 * 22 21 20 24 24 H 1.08005 * 120.00026 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99773 * 179.97438 * 23 22 21 26 26 N 1.31618 * 120.00197 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99861 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47285 * 90.00026 * 27 25 23 29 29 H 1.48498 * 109.47358 * 209.99960 * 27 25 23 30 30 H 1.48505 * 109.47246 * 330.00198 * 27 25 23 31 31 H 1.09006 * 109.47192 * 180.68101 * 1 2 3 32 32 H 1.08997 * 109.47060 * 300.68315 * 1 2 3 33 33 H 1.09001 * 109.46986 * 60.68098 * 1 2 3 34 34 H 1.09005 * 109.91360 * 122.94937 * 4 2 1 35 35 H 1.09000 * 110.07584 * 1.76688 * 4 2 1 36 36 H 1.08000 * 120.81120 * 359.96279 * 9 8 6 37 37 H 1.08001 * 120.24694 * 180.25791 * 10 9 8 38 38 H 1.08001 * 119.39207 * 179.70341 * 11 10 9 39 39 H 1.08998 * 109.46631 * 60.00332 * 15 14 13 40 40 H 1.08998 * 109.46885 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47280 * 300.00691 * 15 14 13 42 42 H 1.09003 * 109.46740 * 54.99651 * 16 14 13 43 43 H 1.08998 * 109.47044 * 174.99935 * 16 14 13 44 44 H 1.09005 * 109.47009 * 294.99824 * 16 14 13 45 45 H 1.09008 * 110.66027 * 157.50485 * 17 5 4 46 46 H 1.08997 * 110.66494 * 280.61663 * 17 5 4 47 47 H 1.09002 * 109.47084 * 48.56326 * 20 18 17 48 48 H 1.09002 * 109.46780 * 168.55569 * 20 18 17 49 49 H 1.09002 * 109.47072 * 300.00703 * 21 20 18 50 50 H 1.09003 * 109.46781 * 59.99865 * 21 20 18 51 51 H 0.96993 * 119.99622 * 0.02562 * 22 21 20 52 52 H 0.96998 * 119.99686 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0860 -1.3447 7 8 3.6324 -3.9908 -0.7639 8 6 2.6326 -3.2641 -2.7431 9 6 2.6670 -2.1914 -3.6417 10 6 2.2570 -2.4118 -4.9444 11 6 1.8177 -3.6700 -5.3168 12 7 1.7927 -4.6679 -4.4555 13 6 2.1794 -4.5138 -3.1983 14 7 2.1370 -5.5883 -2.3291 15 6 0.7538 -6.0286 -2.1036 16 6 2.9686 -6.6954 -2.8196 17 6 3.2816 -1.5368 0.6472 18 6 2.0693 -0.7721 1.2263 19 1 1.3210 -1.4692 1.6032 20 6 2.5114 0.1967 2.3250 21 6 2.9217 -0.5949 3.5682 22 7 3.3444 0.3327 4.6204 23 6 3.7588 -0.1501 5.8329 24 1 3.7744 -1.2149 6.0134 25 6 4.1598 0.7288 6.8296 26 7 4.1412 2.0263 6.6095 27 14 4.7258 0.0701 8.4835 28 1 6.1914 -0.1662 8.4469 29 1 4.4104 1.0598 9.5447 30 1 4.0256 -1.2069 8.7736 31 1 -0.3634 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8112 35 1 1.2353 -1.1172 -1.8377 36 1 3.0091 -1.2166 -3.3268 37 1 2.2750 -1.6068 -5.6640 38 1 1.4935 -3.8389 -6.3331 39 1 0.3088 -6.3287 -3.0523 40 1 0.7494 -6.8749 -1.4167 41 1 0.1769 -5.2092 -1.6749 42 1 3.9830 -6.3373 -2.9959 43 1 2.9885 -7.4920 -2.0759 44 1 2.5514 -7.0782 -3.7511 45 1 3.4980 -2.4223 1.2450 46 1 4.1541 -0.8858 0.5925 47 1 3.3590 0.7841 1.9720 48 1 1.6862 0.8637 2.5748 49 1 2.0740 -1.1823 3.9211 50 1 3.7468 -1.2619 3.3183 51 1 3.3307 1.2889 4.4580 52 1 4.4211 2.6405 7.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105007268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:55 Heat of formation + Delta-G solvation = 10.296833 kcal Electronic energy + Delta-G solvation = -30757.080409 eV Core-core repulsion = 26756.398795 eV Total energy + Delta-G solvation = -4000.681614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.01116 -40.73123 -38.89539 -37.94112 -36.85360 -34.75899 -33.67495 -33.24189 -31.84909 -31.54374 -28.67193 -28.63845 -27.45449 -26.37782 -25.89232 -25.09590 -23.87925 -22.66909 -22.10475 -21.03657 -20.74505 -19.16932 -18.41960 -18.13476 -17.91662 -16.86728 -16.71592 -16.59475 -16.27579 -16.12130 -15.75825 -15.33729 -15.23744 -15.06680 -15.03694 -14.60889 -14.45657 -14.35177 -14.07111 -13.98775 -13.57151 -13.48108 -13.24086 -13.18198 -13.07273 -12.96683 -12.88166 -12.79453 -12.66600 -12.40065 -12.27241 -12.12115 -11.90515 -11.57278 -11.52633 -11.29735 -11.10904 -10.93338 -10.92696 -10.73695 -10.04295 -9.68173 -9.57538 -9.00744 -7.96606 -5.25219 -0.33570 0.10688 1.46196 1.48031 1.56565 1.74498 1.92704 2.55090 2.60743 2.68089 3.27752 3.36701 3.49099 3.55920 3.70678 3.80635 3.87088 3.97737 4.06941 4.10866 4.23022 4.30612 4.31369 4.35765 4.44057 4.49380 4.49855 4.52330 4.58211 4.61153 4.65061 4.69908 4.80577 4.81515 4.84927 4.87707 4.92881 4.94939 5.04484 5.06465 5.11294 5.19848 5.30009 5.37869 5.41632 5.42985 5.48653 5.56317 5.75691 6.19252 6.26764 6.51851 6.79256 7.15441 7.32778 8.08766 8.33084 9.26827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002188 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.595709 B =12795.882335 C =13762.034714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.104 0.896 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.578 3.422 7 O -0.554 6.554 8 C -0.173 4.173 9 C -0.041 4.041 10 C -0.165 4.165 11 C 0.127 3.873 12 N -0.535 5.535 13 C 0.324 3.676 14 N -0.510 5.510 15 C 0.037 3.963 16 C 0.045 3.955 17 C 0.111 3.889 18 C -0.082 4.082 19 H 0.072 0.928 20 C -0.097 4.097 21 C 0.149 3.851 22 N -0.746 5.746 23 C -0.249 4.249 24 H 0.070 0.930 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.973 3.027 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.272 1.272 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.193 0.807 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.014 0.986 51 H 0.376 0.624 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 -7.503 -31.704 33.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.122 0.878 4 C -0.020 4.020 5 N -0.352 5.352 6 C 0.368 3.632 7 O -0.432 6.432 8 C -0.180 4.180 9 C -0.067 4.067 10 C -0.184 4.184 11 C -0.032 4.032 12 N -0.247 5.247 13 C 0.095 3.905 14 N -0.233 5.233 15 C -0.110 4.110 16 C -0.102 4.102 17 C -0.012 4.012 18 C -0.102 4.102 19 H 0.091 0.909 20 C -0.135 4.135 21 C 0.023 3.977 22 N -0.389 5.389 23 C -0.381 4.381 24 H 0.088 0.912 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.801 3.199 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.197 1.197 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.209 0.791 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.030 0.970 50 H 0.032 0.968 51 H 0.208 0.792 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.077 -8.932 -31.131 33.635 hybrid contribution 0.528 0.359 1.051 1.230 sum -8.550 -8.573 -30.080 32.425 Atomic orbital electron populations 1.21820 0.93244 1.01658 1.02966 1.22161 0.97098 1.00027 0.92112 0.87787 1.22598 0.95967 0.86501 0.96931 1.48750 1.53758 1.15150 1.17589 1.17824 0.79010 0.80407 0.86008 1.90795 1.43617 1.40848 1.67926 1.20618 1.07142 0.95493 0.94768 1.22253 0.93102 0.98269 0.93081 1.22527 0.99524 0.99759 0.96564 1.23469 0.92010 0.88168 0.99526 1.67894 1.17375 1.36257 1.03189 1.19826 0.92110 0.90765 0.87777 1.59842 1.12614 1.07722 1.43074 1.22354 0.86203 1.01222 1.01196 1.22236 0.96216 0.92223 0.99514 1.22449 0.97480 0.98776 0.82465 1.22115 0.96450 0.96764 0.94860 0.90917 1.21543 1.01422 0.97486 0.93083 1.20838 0.95761 0.92595 0.88506 1.42570 1.79108 1.05502 1.11717 1.19614 1.34894 0.92298 0.91245 0.91207 1.25559 1.03310 0.95671 1.02141 1.69801 1.55633 1.01723 1.34628 0.85153 0.77991 0.77246 0.79463 1.21334 1.21747 1.19712 0.93524 0.92484 0.90241 0.88619 0.89522 0.81668 0.79739 0.79063 0.93708 0.89659 0.92321 0.92855 0.89886 0.93638 0.92448 0.90226 0.91182 0.91075 0.97021 0.96827 0.79215 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.90 71.98 0.64 -1.39 16 2 C -0.10 -1.55 3.17 -9.90 -0.03 -1.58 16 3 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 4 C 0.10 1.48 4.92 86.53 0.43 1.91 16 5 N -0.62 -14.53 3.29 -813.96 -2.68 -17.20 16 6 C 0.58 16.33 7.41 86.67 0.64 16.97 16 7 O -0.55 -20.68 16.05 -4.03 -0.06 -20.74 16 8 C -0.17 -3.81 5.50 -19.88 -0.11 -3.92 16 9 C -0.04 -0.52 8.31 22.71 0.19 -0.34 16 10 C -0.16 -1.28 10.09 22.32 0.23 -1.05 16 11 C 0.13 1.40 11.16 84.72 0.95 2.35 16 12 N -0.53 -10.21 9.59 -192.52 -1.85 -12.06 16 13 C 0.32 7.51 5.30 133.64 0.71 8.22 16 14 N -0.51 -12.79 3.51 -751.06 -2.63 -15.42 16 15 C 0.04 0.75 9.47 127.69 1.21 1.96 16 16 C 0.04 0.98 9.37 127.69 1.20 2.17 16 17 C 0.11 2.97 5.94 86.61 0.51 3.48 16 18 C -0.08 -1.98 2.58 -9.70 -0.02 -2.00 16 19 H 0.07 1.93 7.86 -2.39 -0.02 1.91 16 20 C -0.10 -2.91 4.70 30.59 0.14 -2.77 16 21 C 0.15 6.15 6.15 86.38 0.53 6.68 16 22 N -0.75 -39.07 5.60 -343.45 -1.92 -41.00 16 23 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 24 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 26 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 27 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 29 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 30 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.89 7.05 -2.38 -0.02 0.87 16 35 H 0.09 1.06 6.73 -2.39 -0.02 1.04 16 36 H 0.17 1.34 5.82 -2.91 -0.02 1.33 16 37 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 38 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.04 0.84 7.93 -2.39 -0.02 0.82 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 0.89 7.95 -2.38 -0.02 0.87 16 45 H 0.06 1.89 7.79 -2.38 -0.02 1.87 16 46 H 0.08 2.06 7.93 -2.39 -0.02 2.04 16 47 H 0.07 2.06 7.99 -2.39 -0.02 2.04 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.01 0.58 7.67 -2.39 -0.02 0.57 16 51 H 0.38 20.44 7.67 -92.71 -0.71 19.73 16 52 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.64 416.18 1.87 -77.77 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.19 Total: 25.72 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 8.51 Total: 13.18 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -8.80 Total: -145.22 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -79.64 1.87 -77.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105007268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.070 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds