Wall clock time and date at job start Wed Apr 1 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.29274 * 2 1 4 4 C 1.54008 * 110.32542 * 237.87026 * 2 1 3 5 5 N 1.47483 * 107.08480 * 242.31187 * 4 2 1 6 6 C 1.34774 * 127.03722 * 154.51567 * 5 4 2 7 7 O 1.21684 * 120.00502 * 185.70080 * 6 5 4 8 8 C 1.46760 * 119.99894 * 5.69734 * 6 5 4 9 9 C 1.36689 * 126.87936 * 6.82984 * 8 6 5 10 10 N 1.33312 * 107.79554 * 179.70534 * 9 8 6 11 11 C 1.30946 * 109.75589 * 359.73736 * 10 9 8 12 12 N 1.34511 * 108.96037 * 0.76118 * 11 10 9 13 13 C 1.46472 * 126.54362 * 178.66447 * 12 11 10 14 14 C 1.53037 * 109.57050 * 28.17318 * 13 12 11 15 15 C 1.52830 * 109.57329 * 270.59359 * 14 13 12 16 16 C 1.52578 * 110.30514 * 61.24361 * 15 14 13 17 17 C 1.50935 * 125.88097 * 180.87940 * 11 10 9 18 18 C 1.48122 * 105.93067 * 334.77921 * 5 4 2 19 19 C 1.54593 * 103.42401 * 39.02055 * 18 5 4 20 20 H 1.09006 * 110.57084 * 81.17673 * 19 18 5 21 21 C 1.52996 * 110.98713 * 204.37377 * 19 18 5 22 22 N 1.46498 * 109.47344 * 288.65552 * 21 19 18 23 23 C 1.36944 * 119.99965 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00000 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99816 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00136 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99784 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47096 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47412 * 119.99623 * 27 25 23 30 30 H 1.48502 * 109.46788 * 239.99811 * 27 25 23 31 31 H 1.08997 * 109.47564 * 180.67810 * 1 2 3 32 32 H 1.09005 * 109.46835 * 300.67696 * 1 2 3 33 33 H 1.08995 * 109.47391 * 60.67392 * 1 2 3 34 34 H 1.08994 * 109.91639 * 122.94861 * 4 2 1 35 35 H 1.09002 * 110.07173 * 1.76096 * 4 2 1 36 36 H 1.08007 * 126.10618 * 359.68727 * 9 8 6 37 37 H 1.08995 * 109.45318 * 268.13958 * 13 12 11 38 38 H 1.09004 * 109.45232 * 148.19188 * 13 12 11 39 39 H 1.08997 * 109.45396 * 30.62329 * 14 13 12 40 40 H 1.09000 * 109.45674 * 150.56683 * 14 13 12 41 41 H 1.09005 * 109.33020 * 181.50027 * 15 14 13 42 42 H 1.09007 * 109.32909 * 300.98492 * 15 14 13 43 43 H 1.08995 * 109.45727 * 153.42781 * 16 15 14 44 44 H 1.08998 * 109.45855 * 273.40022 * 16 15 14 45 45 H 1.09008 * 109.50236 * 106.91885 * 17 11 10 46 46 H 1.08999 * 109.53184 * 346.83405 * 17 11 10 47 47 H 1.09000 * 110.66029 * 157.51156 * 18 5 4 48 48 H 1.09006 * 110.65509 * 280.62108 * 18 5 4 49 49 H 1.09003 * 109.47543 * 48.65717 * 21 19 18 50 50 H 1.09008 * 109.47082 * 168.65529 * 21 19 18 51 51 H 0.96994 * 120.00289 * 359.97438 * 22 21 19 52 52 H 0.97002 * 119.99992 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2230 5 7 2.8297 -1.9203 -0.7105 6 6 3.0644 -3.0859 -1.3451 7 8 3.6261 -3.9940 -0.7617 8 6 2.6425 -3.2599 -2.7399 9 6 2.1231 -2.3021 -3.5654 10 7 1.8800 -2.8705 -4.7465 11 6 2.2240 -4.1334 -4.7092 12 7 2.6899 -4.4233 -3.4811 13 6 3.1534 -5.7306 -3.0103 14 6 3.6976 -6.5373 -4.1915 15 6 2.5650 -7.3438 -4.8259 16 6 1.4805 -6.4092 -5.3534 17 6 2.1213 -5.1124 -5.8534 18 6 3.2816 -1.5369 0.6470 19 6 2.0693 -0.7721 1.2262 20 1 1.3210 -1.4694 1.6031 21 6 2.5073 0.1964 2.3266 22 7 2.9003 -0.5620 3.5167 23 6 3.3311 0.0969 4.6372 24 1 3.3815 1.1757 4.6434 25 6 3.7040 -0.6218 5.7648 26 7 3.6431 -1.9366 5.7570 27 14 4.2923 0.2770 7.2930 28 1 4.2691 1.7411 7.0458 29 1 3.3979 -0.0473 8.4331 30 1 5.6783 -0.1484 7.6145 31 1 -0.3634 -1.0275 0.0122 32 1 -0.3633 0.5243 0.8839 33 1 -0.3634 0.5033 -0.8959 34 1 2.7165 -0.1221 -1.8112 35 1 1.2352 -1.1170 -1.8378 36 1 1.9418 -1.2692 -3.3069 37 1 2.3216 -6.2686 -2.5557 38 1 3.9427 -5.5914 -2.2715 39 1 4.1183 -5.8575 -4.9323 40 1 4.4743 -7.2166 -3.8401 41 1 2.9621 -7.9371 -5.6496 42 1 2.1346 -8.0108 -4.0788 43 1 0.9520 -6.8932 -6.1746 44 1 0.7768 -6.1811 -4.5528 45 1 3.1177 -5.3248 -6.2411 46 1 1.5065 -4.6844 -6.6451 47 1 3.4980 -2.4224 1.2447 48 1 4.1541 -0.8858 0.5922 49 1 3.3541 0.7863 1.9757 50 1 1.6801 0.8610 2.5761 51 1 2.8547 -1.5309 3.5113 52 1 3.9033 -2.4388 6.5451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106312800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:58 Heat of formation + Delta-G solvation = 36.759661 kcal Electronic energy + Delta-G solvation = -31083.841071 eV Core-core repulsion = 27084.306972 eV Total energy + Delta-G solvation = -3999.534099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.67750 -39.93301 -37.82471 -37.66589 -34.72297 -33.96210 -32.92618 -31.53129 -31.20176 -30.15066 -28.83859 -26.71323 -26.55597 -25.34989 -24.64703 -23.47454 -22.40583 -21.07305 -20.57828 -20.28265 -19.89480 -19.37687 -17.46346 -16.94921 -16.57928 -16.24430 -15.82894 -15.74144 -15.36116 -14.98162 -14.64991 -14.38594 -14.25014 -13.98630 -13.88500 -13.49851 -13.26189 -13.23091 -13.09982 -12.99858 -12.85132 -12.37415 -12.35955 -12.15309 -11.97756 -11.84557 -11.41254 -11.30564 -11.20401 -11.10463 -11.03188 -10.86829 -10.56441 -10.47229 -10.42911 -10.34229 -9.99046 -9.89731 -9.79745 -9.66470 -8.88247 -8.74698 -8.53934 -6.91994 -5.75204 -3.04573 1.18725 2.23103 2.63993 3.09249 3.26481 3.44229 3.49528 3.52045 3.92245 4.11974 4.21348 4.29024 4.39897 4.55759 4.58934 4.63683 4.78075 4.83715 4.85323 4.90056 4.91951 5.04391 5.16088 5.25774 5.28233 5.35974 5.38208 5.42915 5.51179 5.52312 5.54200 5.56805 5.58822 5.67768 5.76235 5.79472 5.80438 5.95017 5.98476 6.06499 6.12882 6.18357 6.21388 6.33350 6.39887 6.48517 6.71588 6.84127 6.85726 7.51560 7.71127 7.72444 8.11701 8.42962 9.54296 10.11515 10.45675 11.47480 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.002303 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.053970 B =12157.578762 C =13324.907031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.093 3.907 5 N -0.607 5.607 6 C 0.609 3.391 7 O -0.545 6.545 8 C -0.080 4.080 9 C 0.026 3.974 10 N -0.495 5.495 11 C 0.229 3.771 12 N -0.416 5.416 13 C 0.096 3.904 14 C -0.141 4.141 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.038 4.038 18 C 0.118 3.882 19 C -0.102 4.102 20 H 0.084 0.916 21 C 0.165 3.835 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.187 0.813 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.022 0.978 50 H 0.024 0.976 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -6.608 -26.734 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.030 4.030 5 N -0.339 5.339 6 C 0.398 3.602 7 O -0.424 6.424 8 C -0.197 4.197 9 C -0.128 4.128 10 N -0.214 5.214 11 C -0.033 4.033 12 N -0.096 5.096 13 C -0.026 4.026 14 C -0.178 4.178 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.077 4.077 18 C -0.003 4.003 19 C -0.122 4.122 20 H 0.102 0.898 21 C 0.037 3.963 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.203 0.797 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.040 0.960 50 H 0.042 0.958 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.906 -6.835 -26.965 28.247 hybrid contribution 0.637 -0.165 1.733 1.854 sum -4.269 -7.000 -25.232 26.531 Atomic orbital electron populations 1.21835 0.94054 1.02014 1.02022 1.22103 0.96455 0.99780 0.93593 0.89196 1.22619 0.95662 0.87455 0.97227 1.48396 1.53106 1.14147 1.18289 1.16281 0.79084 0.81362 0.83465 1.90806 1.44310 1.39830 1.67470 1.20681 1.15465 0.88142 0.95391 1.23167 1.00509 0.99877 0.89231 1.70119 1.22550 1.05016 1.23718 1.23418 0.99712 0.93406 0.86796 1.45241 1.45331 1.08915 1.10148 1.22243 1.01872 0.80258 0.98195 1.22045 0.99010 0.99460 0.97289 1.21637 0.95702 0.97977 1.00950 1.21610 0.98297 0.94683 1.01688 1.20262 1.03088 0.91580 0.92738 1.22565 0.97003 1.00248 0.80468 1.22518 0.97007 0.97893 0.94734 0.89767 1.20628 0.96641 0.92704 0.86309 1.42388 1.79263 1.05953 1.10161 1.19253 1.35827 0.91275 0.90737 0.91101 1.24757 1.02414 0.95494 0.98345 1.69675 1.54410 1.04538 1.29374 0.86124 0.78083 0.78621 0.83399 1.20558 1.21899 1.21887 0.92670 0.91774 0.92595 0.91004 0.89936 0.79679 0.89524 0.86942 0.90191 0.89338 0.90959 0.91168 0.90213 0.91555 0.89136 0.88298 0.89082 0.90374 0.96010 0.95793 0.78220 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.90 37.15 0.33 -1.15 16 2 C -0.10 -1.15 3.17 -89.25 -0.28 -1.44 16 3 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 4 C 0.09 1.02 4.89 -2.98 -0.01 1.01 16 5 N -0.61 -8.77 3.29 -171.48 -0.56 -9.34 16 6 C 0.61 9.70 7.85 -12.82 -0.10 9.60 16 7 O -0.55 -10.29 15.06 5.20 0.08 -10.21 16 8 C -0.08 -1.10 6.85 -82.19 -0.56 -1.67 16 9 C 0.03 0.33 10.27 -17.47 -0.18 0.15 16 10 N -0.50 -6.38 11.20 -10.48 -0.12 -6.50 16 11 C 0.23 2.54 6.83 -155.41 -1.06 1.48 16 12 N -0.42 -5.01 3.10 -109.85 -0.34 -5.35 16 13 C 0.10 0.97 5.95 -4.04 -0.02 0.94 16 14 C -0.14 -0.93 5.56 -26.80 -0.15 -1.08 16 15 C -0.13 -0.64 5.68 -27.03 -0.15 -0.79 16 16 C -0.12 -0.71 5.67 -26.93 -0.15 -0.87 16 17 C -0.04 -0.27 5.54 -27.75 -0.15 -0.42 16 18 C 0.12 1.93 6.47 -2.31 -0.01 1.92 16 19 C -0.10 -1.59 2.60 -88.94 -0.23 -1.82 16 20 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 21 C 0.17 3.16 5.58 -4.04 -0.02 3.13 16 22 N -0.73 -18.32 5.52 -59.90 -0.33 -18.65 16 23 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 24 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 27 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 35 H 0.08 0.82 5.42 -51.93 -0.28 0.54 16 36 H 0.19 1.88 4.92 -52.48 -0.26 1.62 16 37 H 0.09 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.11 1.37 6.42 -51.93 -0.33 1.04 16 39 H 0.08 0.55 5.68 -51.93 -0.30 0.26 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.49 7.84 -51.93 -0.41 0.09 16 45 H 0.09 0.52 6.30 -51.92 -0.33 0.20 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.75 7.81 -51.93 -0.41 1.34 16 48 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 49 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 50 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 51 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 52 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -34.40 398.15 -11.02 -45.42 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.43 Total: 7.21 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -3.02 Total: 1.67 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.63 Total: -67.58 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.40 -11.02 -45.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106312800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.181 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds