Wall clock time and date at job start Wed Apr 1 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.29274 * 2 1 4 4 C 1.54008 * 110.32542 * 237.87026 * 2 1 3 5 5 N 1.47483 * 107.08480 * 242.31187 * 4 2 1 6 6 C 1.34774 * 127.03722 * 154.51567 * 5 4 2 7 7 O 1.21684 * 120.00502 * 185.70080 * 6 5 4 8 8 C 1.46760 * 119.99894 * 5.69734 * 6 5 4 9 9 C 1.36689 * 126.87936 * 6.82984 * 8 6 5 10 10 N 1.33312 * 107.79554 * 179.70534 * 9 8 6 11 11 C 1.30946 * 109.75589 * 359.73736 * 10 9 8 12 12 N 1.34511 * 108.96037 * 0.76118 * 11 10 9 13 13 C 1.46472 * 126.54362 * 178.66447 * 12 11 10 14 14 C 1.53037 * 109.57050 * 28.17318 * 13 12 11 15 15 C 1.52830 * 109.57329 * 270.59359 * 14 13 12 16 16 C 1.52578 * 110.30514 * 61.24361 * 15 14 13 17 17 C 1.50935 * 125.88097 * 180.87940 * 11 10 9 18 18 C 1.48122 * 105.93067 * 334.77921 * 5 4 2 19 19 C 1.54593 * 103.42401 * 39.02055 * 18 5 4 20 20 H 1.09006 * 110.57084 * 81.17673 * 19 18 5 21 21 C 1.52996 * 110.98713 * 204.37377 * 19 18 5 22 22 N 1.46498 * 109.47344 * 288.65552 * 21 19 18 23 23 C 1.36944 * 119.99965 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00000 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99816 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00136 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99784 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47096 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47412 * 119.99623 * 27 25 23 30 30 H 1.48502 * 109.46788 * 239.99811 * 27 25 23 31 31 H 1.08997 * 109.47564 * 180.67810 * 1 2 3 32 32 H 1.09005 * 109.46835 * 300.67696 * 1 2 3 33 33 H 1.08995 * 109.47391 * 60.67392 * 1 2 3 34 34 H 1.08994 * 109.91639 * 122.94861 * 4 2 1 35 35 H 1.09002 * 110.07173 * 1.76096 * 4 2 1 36 36 H 1.08007 * 126.10618 * 359.68727 * 9 8 6 37 37 H 1.08995 * 109.45318 * 268.13958 * 13 12 11 38 38 H 1.09004 * 109.45232 * 148.19188 * 13 12 11 39 39 H 1.08997 * 109.45396 * 30.62329 * 14 13 12 40 40 H 1.09000 * 109.45674 * 150.56683 * 14 13 12 41 41 H 1.09005 * 109.33020 * 181.50027 * 15 14 13 42 42 H 1.09007 * 109.32909 * 300.98492 * 15 14 13 43 43 H 1.08995 * 109.45727 * 153.42781 * 16 15 14 44 44 H 1.08998 * 109.45855 * 273.40022 * 16 15 14 45 45 H 1.09008 * 109.50236 * 106.91885 * 17 11 10 46 46 H 1.08999 * 109.53184 * 346.83405 * 17 11 10 47 47 H 1.09000 * 110.66029 * 157.51156 * 18 5 4 48 48 H 1.09006 * 110.65509 * 280.62108 * 18 5 4 49 49 H 1.09003 * 109.47543 * 48.65717 * 21 19 18 50 50 H 1.09008 * 109.47082 * 168.65529 * 21 19 18 51 51 H 0.96994 * 120.00289 * 359.97438 * 22 21 19 52 52 H 0.97002 * 119.99992 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2230 5 7 2.8297 -1.9203 -0.7105 6 6 3.0644 -3.0859 -1.3451 7 8 3.6261 -3.9940 -0.7617 8 6 2.6425 -3.2599 -2.7399 9 6 2.1231 -2.3021 -3.5654 10 7 1.8800 -2.8705 -4.7465 11 6 2.2240 -4.1334 -4.7092 12 7 2.6899 -4.4233 -3.4811 13 6 3.1534 -5.7306 -3.0103 14 6 3.6976 -6.5373 -4.1915 15 6 2.5650 -7.3438 -4.8259 16 6 1.4805 -6.4092 -5.3534 17 6 2.1213 -5.1124 -5.8534 18 6 3.2816 -1.5369 0.6470 19 6 2.0693 -0.7721 1.2262 20 1 1.3210 -1.4694 1.6031 21 6 2.5073 0.1964 2.3266 22 7 2.9003 -0.5620 3.5167 23 6 3.3311 0.0969 4.6372 24 1 3.3815 1.1757 4.6434 25 6 3.7040 -0.6218 5.7648 26 7 3.6431 -1.9366 5.7570 27 14 4.2923 0.2770 7.2930 28 1 4.2691 1.7411 7.0458 29 1 3.3979 -0.0473 8.4331 30 1 5.6783 -0.1484 7.6145 31 1 -0.3634 -1.0275 0.0122 32 1 -0.3633 0.5243 0.8839 33 1 -0.3634 0.5033 -0.8959 34 1 2.7165 -0.1221 -1.8112 35 1 1.2352 -1.1170 -1.8378 36 1 1.9418 -1.2692 -3.3069 37 1 2.3216 -6.2686 -2.5557 38 1 3.9427 -5.5914 -2.2715 39 1 4.1183 -5.8575 -4.9323 40 1 4.4743 -7.2166 -3.8401 41 1 2.9621 -7.9371 -5.6496 42 1 2.1346 -8.0108 -4.0788 43 1 0.9520 -6.8932 -6.1746 44 1 0.7768 -6.1811 -4.5528 45 1 3.1177 -5.3248 -6.2411 46 1 1.5065 -4.6844 -6.6451 47 1 3.4980 -2.4224 1.2447 48 1 4.1541 -0.8858 0.5922 49 1 3.3541 0.7863 1.9757 50 1 1.6801 0.8610 2.5761 51 1 2.8547 -1.5309 3.5113 52 1 3.9033 -2.4388 6.5451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106312800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:57 Heat of formation + Delta-G solvation = 15.137428 kcal Electronic energy + Delta-G solvation = -31084.778681 eV Core-core repulsion = 27084.306972 eV Total energy + Delta-G solvation = -4000.471710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.58539 -41.10797 -39.08123 -38.30399 -36.49652 -34.76028 -34.30870 -33.07044 -32.12009 -31.23988 -30.12736 -27.75656 -27.49260 -26.58744 -25.58019 -24.96085 -23.68167 -22.32788 -21.47513 -21.10529 -20.88482 -20.33471 -19.16131 -18.30487 -17.59405 -17.24250 -17.02980 -16.64184 -16.45771 -16.06211 -15.76546 -15.58422 -15.43736 -15.20938 -14.91170 -14.86947 -14.62082 -14.38882 -14.04213 -13.91146 -13.76060 -13.65013 -13.36638 -13.09032 -12.97584 -12.88231 -12.80042 -12.70984 -12.42638 -12.07623 -11.97978 -11.93459 -11.77991 -11.77377 -11.59758 -11.52612 -11.43162 -11.32186 -11.01335 -10.94825 -10.77168 -9.89601 -9.53347 -9.00164 -7.94985 -5.24306 0.17527 1.27150 1.46726 1.47863 1.57963 1.68176 2.03969 2.15783 2.55672 3.18069 3.27636 3.39118 3.50733 3.53030 3.62467 3.68892 3.78737 3.80983 3.99615 4.11930 4.15910 4.20349 4.20967 4.25003 4.29443 4.37773 4.50755 4.52057 4.54535 4.62020 4.72107 4.78488 4.79367 4.81509 4.84629 4.85949 4.95805 5.01870 5.06365 5.13495 5.15196 5.20059 5.25918 5.26689 5.33577 5.34301 5.41644 5.49595 5.53671 6.01444 6.26672 6.35907 6.76303 6.94414 7.32570 8.08928 8.30381 9.28985 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.002303 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.053970 B =12157.578762 C =13324.907031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.111 0.889 4 C 0.092 3.908 5 N -0.606 5.606 6 C 0.603 3.397 7 O -0.590 6.590 8 C -0.113 4.113 9 C 0.040 3.960 10 N -0.518 5.518 11 C 0.238 3.762 12 N -0.422 5.422 13 C 0.094 3.906 14 C -0.133 4.133 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.039 4.039 18 C 0.123 3.877 19 C -0.092 4.092 20 H 0.064 0.936 21 C 0.165 3.835 22 N -0.749 5.749 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.974 3.026 28 H -0.262 1.262 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.209 0.791 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.032 0.968 50 H 0.033 0.967 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -5.262 -29.725 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.129 0.871 4 C -0.029 4.029 5 N -0.337 5.337 6 C 0.393 3.607 7 O -0.473 6.473 8 C -0.229 4.229 9 C -0.115 4.115 10 N -0.237 5.237 11 C -0.024 4.024 12 N -0.102 5.102 13 C -0.027 4.027 14 C -0.170 4.170 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.077 4.077 18 C 0.000 4.000 19 C -0.112 4.112 20 H 0.082 0.918 21 C 0.039 3.961 22 N -0.391 5.391 23 C -0.371 4.371 24 H 0.099 0.901 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.186 1.186 29 H -0.222 1.222 30 H -0.223 1.223 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.225 0.775 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.064 0.936 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.202 0.798 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.728 -5.425 -29.997 31.017 hybrid contribution 0.853 -0.571 2.575 2.772 sum -4.874 -5.995 -27.422 28.490 Atomic orbital electron populations 1.21829 0.92866 1.01691 1.03258 1.22109 0.97356 1.00121 0.91183 0.87090 1.22893 0.96362 0.86418 0.97266 1.48413 1.53028 1.14830 1.17426 1.16678 0.78545 0.81086 0.84357 1.90775 1.46461 1.41376 1.68663 1.20511 1.17973 0.89707 0.94676 1.23539 0.98762 1.00488 0.88713 1.70187 1.23800 1.05927 1.23820 1.24285 0.97345 0.93660 0.87097 1.45438 1.45399 1.09017 1.10388 1.22310 1.00938 0.80126 0.99365 1.22052 0.99885 0.99259 0.95812 1.21633 0.94856 0.97689 1.01603 1.21604 0.98103 0.94274 1.01835 1.20521 1.04573 0.91178 0.91434 1.22337 0.97640 0.98590 0.81410 1.22325 0.96147 0.97276 0.95447 0.91754 1.20804 0.96983 0.93057 0.85278 1.42658 1.79305 1.05682 1.11469 1.19708 1.34099 0.91861 0.91450 0.90088 1.25625 1.03735 0.96254 1.01691 1.69851 1.56419 1.06202 1.29949 0.85050 0.76868 0.78358 0.79360 1.18578 1.22187 1.22338 0.93775 0.92362 0.89569 0.88127 0.88336 0.77513 0.89810 0.89818 0.90074 0.88211 0.88540 0.91129 0.87740 0.93643 0.87286 0.87124 0.93235 0.90159 0.95001 0.94868 0.79819 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.90 71.98 0.64 -1.93 16 2 C -0.09 -1.85 3.17 -9.91 -0.03 -1.88 16 3 H 0.11 1.94 7.85 -2.39 -0.02 1.93 16 4 C 0.09 1.82 4.89 86.53 0.42 2.24 16 5 N -0.61 -17.80 3.29 -814.67 -2.68 -20.48 16 6 C 0.60 20.12 7.85 86.47 0.68 20.80 16 7 O -0.59 -24.20 15.06 -4.30 -0.06 -24.26 16 8 C -0.11 -3.14 6.85 40.03 0.27 -2.86 16 9 C 0.04 0.93 10.27 84.11 0.86 1.80 16 10 N -0.52 -12.48 11.20 -187.07 -2.10 -14.58 16 11 C 0.24 4.97 6.83 138.24 0.94 5.92 16 12 N -0.42 -10.22 3.10 -501.45 -1.55 -11.77 16 13 C 0.09 1.97 5.95 86.40 0.51 2.49 16 14 C -0.13 -1.60 5.56 30.55 0.17 -1.44 16 15 C -0.12 -0.94 5.68 30.40 0.17 -0.76 16 16 C -0.12 -1.08 5.67 30.47 0.17 -0.91 16 17 C -0.04 -0.44 5.54 29.94 0.17 -0.28 16 18 C 0.12 4.19 6.47 86.61 0.56 4.75 16 19 C -0.09 -2.89 2.60 -9.70 -0.03 -2.92 16 20 H 0.06 2.29 7.86 -2.38 -0.02 2.27 16 21 C 0.17 6.27 5.58 86.38 0.48 6.75 16 22 N -0.75 -38.33 5.52 -343.44 -1.90 -40.23 16 23 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 24 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 27 Si 0.97 46.88 29.55 68.60 2.03 48.90 16 28 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 29 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 35 H 0.10 1.68 5.42 -2.39 -0.01 1.66 16 36 H 0.21 3.62 4.92 -2.91 -0.01 3.61 16 37 H 0.08 1.74 7.81 -2.39 -0.02 1.72 16 38 H 0.08 2.25 6.42 -2.38 -0.02 2.24 16 39 H 0.08 0.98 5.68 -2.39 -0.01 0.96 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.07 0.58 8.09 -2.38 -0.02 0.56 16 43 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.04 0.61 7.84 -2.39 -0.02 0.60 16 45 H 0.11 0.90 6.30 -2.38 -0.02 0.89 16 46 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 48 H 0.08 2.67 7.95 -2.38 -0.02 2.66 16 49 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 50 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 51 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 52 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.57 398.15 1.55 -77.02 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.22 Total: 31.75 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 7.31 Total: 14.89 kcal Atomic # 7 Polarization: -140.36 SS G_CDS: -7.95 Total: -148.31 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -78.57 1.55 -77.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106312800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.161 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds