Wall clock time and date at job start Wed Apr 1 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.28920 * 2 1 4 4 C 1.53998 * 110.33466 * 237.86242 * 2 1 3 5 5 N 1.47481 * 107.08415 * 242.31488 * 4 2 1 6 6 C 1.34784 * 127.03335 * 154.51448 * 5 4 2 7 7 O 1.21283 * 119.99667 * 180.02562 * 6 5 4 8 8 C 1.50693 * 119.99987 * 0.02562 * 6 5 4 9 9 H 1.08993 * 109.47454 * 39.99751 * 8 6 5 10 10 C 1.50701 * 109.47116 * 279.99881 * 8 6 5 11 11 C 1.38672 * 120.42059 * 100.00177 * 10 8 6 12 12 C 1.38629 * 118.42156 * 180.02562 * 11 10 8 13 13 C 1.38224 * 119.16037 * 359.97438 * 12 11 10 14 14 N 1.31852 * 120.76545 * 0.02562 * 13 12 11 15 15 C 1.31883 * 121.72373 * 359.69828 * 14 13 12 16 16 N 1.46896 * 109.47155 * 160.00281 * 8 6 5 17 17 C 1.46904 * 111.00186 * 179.97438 * 16 8 6 18 18 C 1.46901 * 111.00013 * 303.95134 * 16 8 6 19 19 C 1.48118 * 105.93310 * 334.77284 * 5 4 2 20 20 C 1.54595 * 103.42024 * 39.02796 * 19 5 4 21 21 H 1.08994 * 110.57552 * 81.16822 * 20 19 5 22 22 C 1.53003 * 110.98546 * 204.37633 * 20 19 5 23 23 N 1.46506 * 109.46942 * 288.64746 * 22 20 19 24 24 C 1.36934 * 119.99570 * 180.02562 * 23 22 20 25 25 H 1.07994 * 120.00462 * 359.97438 * 24 23 22 26 26 C 1.38821 * 119.99407 * 180.02562 * 24 23 22 27 27 N 1.31614 * 120.00245 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99715 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47189 * 59.99602 * 28 26 24 30 30 H 1.48496 * 109.46989 * 179.97438 * 28 26 24 31 31 H 1.48506 * 109.47253 * 299.99715 * 28 26 24 32 32 H 1.09001 * 109.46870 * 180.68139 * 1 2 3 33 33 H 1.08998 * 109.47598 * 300.68616 * 1 2 3 34 34 H 1.09008 * 109.46772 * 60.68999 * 1 2 3 35 35 H 1.08997 * 109.92001 * 122.94548 * 4 2 1 36 36 H 1.09002 * 109.91121 * 1.67000 * 4 2 1 37 37 H 1.07996 * 120.78675 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.41513 * 180.02562 * 12 11 10 39 39 H 1.08008 * 119.61210 * 179.97438 * 13 12 11 40 40 H 1.08005 * 119.61809 * 180.31237 * 15 14 13 41 41 H 1.08994 * 109.47208 * 63.95237 * 17 16 8 42 42 H 1.09001 * 109.47329 * 183.95352 * 17 16 8 43 43 H 1.08996 * 109.47065 * 303.95022 * 17 16 8 44 44 H 1.08996 * 109.47104 * 56.04181 * 18 16 8 45 45 H 1.08998 * 109.47291 * 176.05083 * 18 16 8 46 46 H 1.09002 * 109.47083 * 296.04547 * 18 16 8 47 47 H 1.09000 * 110.66016 * 157.51335 * 19 5 4 48 48 H 1.09001 * 110.66208 * 280.62611 * 19 5 4 49 49 H 1.08994 * 109.47266 * 48.65126 * 22 20 19 50 50 H 1.09004 * 109.46704 * 168.65422 * 22 20 19 51 51 H 0.97001 * 119.99846 * 0.02562 * 23 22 20 52 52 H 0.96995 * 120.00287 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2227 5 7 2.8298 -1.9202 -0.7100 6 6 3.0647 -3.0860 -1.3445 7 8 3.7141 -3.9530 -0.7992 8 6 2.5203 -3.3119 -2.7314 9 1 2.6197 -2.3964 -3.3144 10 6 1.0657 -3.6960 -2.6437 11 6 0.0753 -2.7535 -2.8755 12 6 -1.2493 -3.1519 -2.7834 13 6 -1.5368 -4.4661 -2.4662 14 7 -0.5689 -5.3355 -2.2521 15 6 0.7019 -4.9932 -2.3364 16 7 3.2734 -4.3917 -3.3831 17 6 2.7688 -4.6407 -4.7402 18 6 4.7116 -4.0932 -3.4023 19 6 3.2816 -1.5367 0.6475 20 6 2.0692 -0.7719 1.2264 21 1 1.3209 -1.4691 1.6032 22 6 2.5071 0.1969 2.3267 23 7 2.8999 -0.5615 3.5171 24 6 3.3305 0.0977 4.6375 25 1 3.3809 1.1764 4.6435 26 6 3.7033 -0.6210 5.7652 27 7 3.6424 -1.9357 5.7577 28 14 4.2914 0.2781 7.2933 29 1 3.2172 1.1798 7.7813 30 1 4.6263 -0.7095 8.3505 31 1 5.4978 1.0787 6.9632 32 1 -0.3633 -1.0276 0.0122 33 1 -0.3634 0.5244 0.8837 34 1 -0.3633 0.5031 -0.8962 35 1 2.7167 -0.1222 -1.8111 36 1 1.2335 -1.1174 -1.8348 37 1 0.3300 -1.7333 -3.1221 38 1 -2.0464 -2.4444 -2.9580 39 1 -2.5663 -4.7843 -2.3920 40 1 1.4673 -5.7344 -2.1592 41 1 2.9338 -3.7574 -5.3570 42 1 3.2963 -5.4903 -5.1737 43 1 1.7019 -4.8594 -4.6966 44 1 5.0589 -3.9131 -2.3850 45 1 5.2526 -4.9389 -3.8267 46 1 4.8905 -3.2059 -4.0097 47 1 3.4981 -2.4221 1.2452 48 1 4.1541 -0.8856 0.5928 49 1 3.3538 0.7866 1.9758 50 1 1.6797 0.8614 2.5760 51 1 2.8550 -1.5304 3.5115 52 1 3.9025 -2.4378 6.5458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107044924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:11 Heat of formation + Delta-G solvation = 12.339888 kcal Electronic energy + Delta-G solvation = -31805.158961 eV Core-core repulsion = 27804.565940 eV Total energy + Delta-G solvation = -4000.593020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.01541 -40.74475 -39.50102 -37.69567 -36.48231 -34.43274 -33.72326 -33.07645 -32.55850 -30.84748 -29.16255 -28.36581 -27.29289 -26.95194 -25.03826 -24.66828 -23.99188 -23.04037 -22.29244 -21.15270 -20.24989 -19.11863 -18.55845 -18.07337 -17.38869 -17.28150 -17.09218 -16.63186 -16.27710 -15.78835 -15.67817 -15.38997 -15.22131 -15.16062 -14.86871 -14.74817 -14.70846 -14.28021 -14.19058 -13.91242 -13.74216 -13.57312 -13.38551 -13.23087 -13.07887 -13.03028 -12.87325 -12.72552 -12.57325 -12.45249 -12.33803 -12.17419 -11.95949 -11.77799 -11.54724 -11.47510 -11.23693 -10.93616 -10.63637 -10.43499 -9.91080 -9.74956 -9.40159 -9.01371 -7.95095 -5.25020 0.05574 0.31181 1.45828 1.47803 1.49578 1.55814 1.74680 2.55398 2.72001 2.91942 3.31204 3.38599 3.41653 3.53888 3.69388 3.72990 3.80084 3.82086 3.97961 4.04098 4.15374 4.19029 4.23494 4.35888 4.36954 4.37732 4.51053 4.53114 4.58092 4.60775 4.63063 4.65355 4.78477 4.82831 4.86216 4.87235 4.96466 4.99494 5.04552 5.06970 5.15529 5.19215 5.20679 5.25170 5.34935 5.48197 5.53768 5.70657 5.82388 5.96640 6.25698 6.49217 7.02562 7.06065 7.31570 8.08013 8.29564 9.28401 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.002811 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.204259 B = 9959.202568 C =10612.826365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.107 0.893 4 C 0.093 3.907 5 N -0.617 5.617 6 C 0.529 3.471 7 O -0.566 6.566 8 C 0.132 3.868 9 H 0.098 0.902 10 C -0.141 4.141 11 C -0.066 4.066 12 C -0.159 4.159 13 C 0.088 3.912 14 N -0.518 5.518 15 C 0.114 3.886 16 N -0.545 5.545 17 C 0.030 3.970 18 C 0.021 3.979 19 C 0.119 3.881 20 C -0.092 4.092 21 H 0.059 0.941 22 C 0.165 3.835 23 N -0.749 5.749 24 C -0.245 4.245 25 H 0.081 0.919 26 C -0.079 4.079 27 N -0.973 5.973 28 Si 0.976 3.024 29 H -0.275 1.275 30 H -0.299 1.299 31 H -0.276 1.276 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.138 0.862 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.075 0.925 49 H 0.030 0.970 50 H 0.032 0.968 51 H 0.370 0.630 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 4.005 -29.127 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.125 0.875 4 C -0.028 4.028 5 N -0.350 5.350 6 C 0.318 3.682 7 O -0.444 6.444 8 C 0.020 3.980 9 H 0.115 0.885 10 C -0.144 4.144 11 C -0.091 4.091 12 C -0.178 4.178 13 C -0.069 4.069 14 N -0.227 5.227 15 C -0.042 4.042 16 N -0.270 5.270 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.004 4.004 20 C -0.112 4.112 21 H 0.077 0.923 22 C 0.039 3.961 23 N -0.391 5.391 24 C -0.376 4.376 25 H 0.099 0.901 26 C -0.271 4.271 27 N -0.624 5.624 28 Si 0.804 3.196 29 H -0.201 1.201 30 H -0.225 1.225 31 H -0.202 1.202 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.188 0.812 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.201 0.799 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.831 2.317 -28.337 30.083 hybrid contribution 1.119 0.845 1.048 1.751 sum -8.712 3.162 -27.289 28.819 Atomic orbital electron populations 1.21826 0.92618 1.01692 1.03373 1.22100 0.97574 0.99950 0.91283 0.87487 1.22755 0.96460 0.86514 0.97077 1.48908 1.53454 1.15427 1.17233 1.20520 0.79579 0.80019 0.88104 1.90714 1.41630 1.43774 1.68257 1.20247 0.90607 0.95689 0.91447 0.88459 1.20355 0.93918 0.95845 1.04249 1.21886 0.92261 0.99994 0.95006 1.22495 0.97687 0.97665 0.99988 1.23405 0.99397 0.90563 0.93526 1.67757 1.01175 1.39295 1.14442 1.22533 0.92752 0.95234 0.93718 1.61601 1.03928 1.41088 1.20388 1.22431 1.00993 1.01747 0.86508 1.22480 0.87097 1.01109 1.01942 1.22243 0.97443 0.98184 0.82503 1.22309 0.96125 0.97162 0.95569 0.92277 1.20799 0.96811 0.93096 0.85387 1.42644 1.79373 1.05612 1.11482 1.19635 1.34615 0.91837 0.91551 0.90122 1.25638 1.03562 0.96215 1.01716 1.69839 1.56178 1.06265 1.30085 0.85179 0.78462 0.77049 0.78880 1.20057 1.22521 1.20198 0.93729 0.92799 0.88925 0.88543 0.88303 0.81249 0.80630 0.80482 0.84426 0.93616 0.89993 0.91715 0.92800 0.89890 0.93941 0.94079 0.90706 0.95227 0.95028 0.79926 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.90 71.98 0.64 -1.52 16 2 C -0.09 -1.71 3.17 -9.91 -0.03 -1.75 16 3 H 0.11 1.73 7.85 -2.39 -0.02 1.71 16 4 C 0.09 1.53 6.16 86.53 0.53 2.07 16 5 N -0.62 -16.64 3.29 -810.10 -2.67 -19.31 16 6 C 0.53 15.85 6.26 87.65 0.55 16.40 16 7 O -0.57 -22.83 14.92 -3.04 -0.05 -22.88 16 8 C 0.13 2.76 1.46 43.42 0.06 2.82 16 9 H 0.10 1.42 7.64 -2.39 -0.02 1.40 16 10 C -0.14 -2.80 3.67 -19.77 -0.07 -2.87 16 11 C -0.07 -0.83 8.40 22.47 0.19 -0.64 16 12 C -0.16 -1.81 10.11 22.36 0.23 -1.58 16 13 C 0.09 1.48 11.18 84.69 0.95 2.42 16 14 N -0.52 -12.86 10.36 -195.84 -2.03 -14.89 16 15 C 0.11 2.92 9.59 84.67 0.81 3.73 16 16 N -0.55 -11.77 3.95 -932.25 -3.68 -15.45 16 17 C 0.03 0.45 9.27 127.69 1.18 1.64 16 18 C 0.02 0.45 9.19 127.69 1.17 1.62 16 19 C 0.12 4.05 6.44 86.61 0.56 4.61 16 20 C -0.09 -2.86 2.60 -9.70 -0.03 -2.88 16 21 H 0.06 2.12 7.86 -2.39 -0.02 2.11 16 22 C 0.17 6.30 5.58 86.38 0.48 6.79 16 23 N -0.75 -38.73 5.52 -343.44 -1.90 -40.62 16 24 C -0.24 -13.82 9.99 84.04 0.84 -12.98 16 25 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 26 C -0.08 -4.67 5.50 84.87 0.47 -4.21 16 27 N -0.97 -62.07 13.06 21.65 0.28 -61.79 16 28 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 29 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 31 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.14 3.59 -2.39 -0.01 1.13 16 37 H 0.17 0.93 6.35 -2.91 -0.02 0.91 16 38 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.14 4.11 7.72 -2.91 -0.02 4.09 16 41 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.03 6.36 -2.39 -0.02 1.01 16 44 H 0.05 1.53 5.68 -2.39 -0.01 1.52 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.04 1.77 7.85 -2.39 -0.02 1.75 16 48 H 0.07 2.50 7.95 -2.39 -0.02 2.48 16 49 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 50 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 52 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -81.13 409.50 0.73 -80.40 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.20 Total: 31.85 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 8.53 Total: 13.66 kcal Atomic # 7 Polarization: -142.07 SS G_CDS: -9.99 Total: -152.06 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -81.13 0.73 -80.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107044924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.741 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds