Wall clock time and date at job start Wed Apr 1 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00274 * 2 1 4 4 N 1.46500 * 109.47332 * 121.46042 * 3 2 1 5 5 C 1.36731 * 127.13812 * 89.24129 * 4 3 2 6 6 C 1.50705 * 126.34668 * 0.26271 * 5 4 3 7 7 C 1.53007 * 109.46820 * 269.71527 * 6 5 4 8 8 C 1.50705 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00007 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99718 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47325 * 89.99747 * 12 10 8 14 14 H 1.48504 * 109.47095 * 209.99347 * 12 10 8 15 15 H 1.48496 * 109.47190 * 329.99712 * 12 10 8 16 16 N 1.30289 * 107.30904 * 180.02562 * 5 4 3 17 17 N 1.28535 * 110.05418 * 359.97438 * 16 5 4 18 18 C 1.31216 * 109.85560 * 0.02562 * 17 16 5 19 19 N 1.38587 * 126.47258 * 180.02562 * 18 17 16 20 20 C 1.47166 * 110.99641 * 273.46429 * 19 18 17 21 21 C 1.52787 * 108.98966 * 180.09939 * 20 19 18 22 22 C 1.53398 * 113.49846 * 78.03012 * 21 20 19 23 23 C 1.53855 * 86.96699 * 89.41692 * 22 21 20 24 24 C 1.53375 * 113.54328 * 175.90891 * 21 20 19 25 25 O 1.42667 * 112.81920 * 307.03451 * 21 20 19 26 26 C 1.43178 * 113.43345 * 54.58643 * 25 21 20 27 27 C 1.46988 * 110.99803 * 37.02720 * 19 18 17 28 28 H 1.09006 * 109.45683 * 295.98236 * 27 19 18 29 29 C 1.52999 * 109.46730 * 55.94992 * 27 19 18 30 30 H 1.07996 * 120.00240 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99880 * 0.02562 * 1 2 3 32 32 H 1.08006 * 119.99587 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47028 * 1.46120 * 3 2 1 34 34 H 1.08996 * 109.46908 * 241.46577 * 3 2 1 35 35 H 1.08997 * 109.47080 * 29.71090 * 6 5 4 36 36 H 1.09000 * 109.47314 * 149.71901 * 6 5 4 37 37 H 1.08997 * 109.46938 * 299.99651 * 7 6 5 38 38 H 1.09000 * 109.46872 * 60.00103 * 7 6 5 39 39 H 0.97002 * 119.99598 * 179.97438 * 11 10 8 40 40 H 1.09001 * 109.55413 * 299.95209 * 20 19 18 41 41 H 1.08997 * 109.55081 * 60.25257 * 20 19 18 42 42 H 1.09003 * 113.63132 * 203.93761 * 22 21 20 43 43 H 1.08996 * 113.63237 * 334.90077 * 22 21 20 44 44 H 1.08994 * 113.60384 * 270.57499 * 23 22 21 45 45 H 1.09000 * 113.67478 * 139.71504 * 23 22 21 46 46 H 1.08997 * 113.63204 * 25.14964 * 24 21 20 47 47 H 1.09002 * 113.62650 * 156.10537 * 24 21 20 48 48 H 1.09011 * 109.50815 * 183.78697 * 26 25 21 49 49 H 1.09002 * 109.51161 * 63.65388 * 26 25 21 50 50 H 1.08999 * 109.46768 * 59.99979 * 29 27 19 51 51 H 1.08998 * 109.47518 * 180.02562 * 29 27 19 52 52 H 1.09005 * 109.46823 * 300.00039 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9321 1.3675 1.1782 5 6 4.2219 0.9248 1.2773 6 6 5.0309 0.2780 0.1826 7 6 4.8332 -1.2385 0.2305 8 6 5.6417 -1.8852 -0.8647 9 1 6.2366 -1.2756 -1.5286 10 6 5.6210 -3.2551 -1.0196 11 7 4.8962 -3.9974 -0.2113 12 14 6.6226 -4.0567 -2.3774 13 1 7.9777 -4.3840 -1.8657 14 1 5.9469 -5.3023 -2.8214 15 1 6.7394 -3.1210 -3.5246 16 7 4.6237 1.1704 2.4921 17 7 3.6829 1.7343 3.1621 18 6 2.6215 1.8794 2.4043 19 7 1.4135 2.4463 2.7784 20 6 0.5301 1.4449 3.3969 21 6 -0.7854 2.1164 3.7883 22 6 -1.7357 2.3365 2.6044 23 6 -2.3046 0.9393 2.9068 24 6 -1.8257 1.1421 4.3547 25 8 -0.5950 3.2803 4.5911 26 6 0.2792 4.2456 3.9962 27 6 1.6239 3.5841 3.6850 28 1 2.0781 3.2314 4.6110 29 6 2.5509 4.6025 3.0184 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3556 2.1334 0.0262 34 1 2.6704 1.3742 -0.9028 35 1 4.7015 0.6569 -0.7849 36 1 6.0861 0.5115 0.3242 37 1 5.1626 -1.6174 1.1979 38 1 3.7780 -1.4719 0.0888 39 1 4.8814 -4.9611 -0.3206 40 1 0.3327 0.6433 2.6851 41 1 1.0092 1.0354 4.2861 42 1 -2.4513 3.1433 2.7627 43 1 -1.2274 2.4024 1.6425 44 1 -1.7868 0.1349 2.3845 45 1 -3.3885 0.8778 2.8101 46 1 -1.3899 0.2479 4.8002 47 1 -2.5662 1.6187 4.9971 48 1 0.4324 5.0735 4.6886 49 1 -0.1649 4.6192 3.0736 50 1 2.0971 4.9550 2.0921 51 1 2.7073 5.4461 3.6907 52 1 3.5089 4.1318 2.7975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121521883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:46 Heat of formation + Delta-G solvation = 82.926027 kcal Electronic energy + Delta-G solvation = -32516.398005 eV Core-core repulsion = 28518.865830 eV Total energy + Delta-G solvation = -3997.532176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.71714 -40.78788 -37.58650 -36.11544 -35.81778 -34.03689 -32.61594 -32.13679 -31.49604 -28.95768 -27.05960 -26.80623 -26.24273 -25.83322 -25.11426 -23.51900 -22.29175 -21.80332 -20.74408 -20.12237 -19.39712 -18.75334 -17.39660 -17.23016 -16.48413 -16.24405 -15.96492 -15.54509 -15.26693 -15.00596 -14.84543 -14.67810 -14.47103 -14.16893 -13.68980 -13.45095 -13.23704 -13.04871 -12.64629 -12.46154 -12.34789 -12.28918 -12.19215 -11.96955 -11.65349 -11.49692 -11.46672 -11.37994 -11.13552 -11.01489 -10.96267 -10.91628 -10.70913 -10.44706 -10.35142 -10.06486 -9.90456 -9.79788 -9.72503 -9.55749 -9.25940 -8.99371 -8.43766 -8.24648 -6.08842 -4.12753 1.88218 2.12132 2.63041 3.21854 3.27563 3.34353 3.36563 3.47142 3.63909 4.25758 4.32209 4.38394 4.40766 4.56311 4.57702 4.71476 4.79169 4.81718 4.94907 5.03788 5.07504 5.17007 5.19630 5.27600 5.35490 5.38396 5.42535 5.42988 5.47316 5.48895 5.51589 5.55463 5.65904 5.71026 5.78054 5.85221 5.92005 5.95739 6.02431 6.06738 6.21375 6.30996 6.40968 6.54778 6.58388 6.61361 6.68343 6.90965 6.96636 7.41240 7.53168 7.65409 7.88586 8.26062 8.93053 9.14401 9.51987 11.02129 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003111 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.488741 B = 8997.683219 C =10027.569034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.171 4.171 3 C 0.142 3.858 4 N -0.462 5.462 5 C 0.216 3.784 6 C -0.032 4.032 7 C 0.033 3.967 8 C -0.524 4.524 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.297 5.297 17 N -0.314 5.314 18 C 0.329 3.671 19 N -0.450 5.450 20 C 0.056 3.944 21 C 0.096 3.904 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.120 4.120 25 O -0.366 6.366 26 C 0.072 3.928 27 C 0.060 3.940 28 H 0.071 0.929 29 C -0.144 4.144 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.024 0.976 38 H 0.016 0.984 39 H 0.262 0.738 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 15.642 4.080 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C 0.019 3.981 4 N -0.155 5.155 5 C -0.051 4.051 6 C -0.072 4.072 7 C -0.006 4.006 8 C -0.562 4.562 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.198 1.198 16 N -0.136 5.136 17 N -0.158 5.158 18 C -0.028 4.028 19 N -0.176 5.176 20 C -0.071 4.071 21 C 0.055 3.945 22 C -0.189 4.189 23 C -0.178 4.178 24 C -0.158 4.158 25 O -0.285 6.285 26 C -0.006 4.006 27 C -0.048 4.048 28 H 0.089 0.911 29 C -0.202 4.202 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.120 0.880 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.790 15.758 5.086 22.880 hybrid contribution 0.179 -1.015 -1.448 1.777 sum -15.612 14.743 3.637 21.778 Atomic orbital electron populations 1.23902 0.95509 1.02050 0.99500 1.23375 0.96434 0.98817 1.00333 1.20893 0.93283 0.97291 0.86605 1.46305 1.12470 1.45995 1.10730 1.25626 0.82628 0.98945 0.97859 1.20463 0.97384 0.98880 0.90465 1.19096 0.97308 0.85993 0.98156 1.21134 1.28241 0.91896 1.14945 0.92324 1.24996 0.95489 0.97430 0.96247 1.69971 1.40035 1.05424 1.37625 0.86570 0.80309 0.78874 0.82120 1.20527 1.21241 1.19801 1.74056 1.22075 1.15602 1.01873 1.74520 0.98417 1.17629 1.25199 1.22052 0.94013 1.02337 0.84358 1.58857 1.07988 1.08139 1.42578 1.22540 0.91505 0.93815 0.99247 1.22718 0.92575 0.86763 0.92399 1.23422 0.98687 0.97800 0.99037 1.22769 1.01343 0.97505 0.96211 1.23009 0.97246 0.98066 0.97475 1.88021 1.66353 1.28690 1.45415 1.22723 0.87831 0.91066 0.98933 1.22272 0.97110 0.90407 0.95014 0.91111 1.21780 0.99694 0.98034 1.00663 0.87812 0.88448 0.85352 0.88426 0.87823 0.91235 0.89284 0.95727 0.96561 0.92881 0.88728 0.92401 0.89465 0.90593 0.89619 0.90647 0.90579 0.88748 0.88017 0.92115 0.92148 0.91442 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 13.80 29.01 0.40 -1.42 16 2 C -0.17 -2.30 9.85 -36.03 -0.35 -2.65 16 3 C 0.14 1.85 6.45 -5.20 -0.03 1.81 16 4 N -0.46 -7.57 2.79 -115.37 -0.32 -7.89 16 5 C 0.22 4.22 7.32 -154.02 -1.13 3.09 16 6 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 7 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 8 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 12 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 N -0.30 -6.35 12.18 32.99 0.40 -5.95 16 17 N -0.31 -6.14 10.91 30.32 0.33 -5.81 16 18 C 0.33 5.39 5.49 -318.86 -1.75 3.64 16 19 N -0.45 -5.87 4.59 -166.76 -0.77 -6.64 16 20 C 0.06 0.71 4.61 -3.79 -0.02 0.69 16 21 C 0.10 0.99 1.23 -90.33 -0.11 0.88 16 22 C -0.15 -1.30 7.13 -26.08 -0.19 -1.48 16 23 C -0.14 -1.09 7.73 -25.84 -0.20 -1.29 16 24 C -0.12 -1.06 7.50 -26.09 -0.20 -1.26 16 25 O -0.37 -4.14 10.58 -35.23 -0.37 -4.52 16 26 C 0.07 0.69 6.19 37.19 0.23 0.92 16 27 C 0.06 0.71 2.27 -67.64 -0.15 0.56 16 28 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 29 C -0.14 -1.61 8.98 37.16 0.33 -1.28 16 30 H 0.10 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.10 0.86 7.49 -52.49 -0.39 0.46 16 32 H 0.13 2.17 6.56 -52.48 -0.34 1.83 16 33 H 0.10 1.07 7.79 -51.93 -0.40 0.67 16 34 H 0.10 1.27 7.27 -51.93 -0.38 0.90 16 35 H 0.07 1.24 7.28 -51.93 -0.38 0.86 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.41 6.65 -51.93 -0.35 0.07 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.09 1.20 6.80 -51.93 -0.35 0.85 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 44 H 0.09 0.69 7.63 -51.93 -0.40 0.29 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 49 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 LS Contribution 411.98 15.07 6.21 6.21 Total: -1.00 -31.58 411.98 -11.42 -43.01 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.75 Total: 1.63 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.87 Total: -10.70 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.38 Total: -51.55 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.37 Total: -4.52 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.58 -11.42 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121521883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.934 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds