Wall clock time and date at job start Wed Apr 1 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00274 * 2 1 4 4 N 1.46500 * 109.47332 * 121.46042 * 3 2 1 5 5 C 1.36731 * 127.13812 * 89.24129 * 4 3 2 6 6 C 1.50705 * 126.34668 * 0.26271 * 5 4 3 7 7 C 1.53007 * 109.46820 * 269.71527 * 6 5 4 8 8 C 1.50705 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00007 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99718 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47325 * 89.99747 * 12 10 8 14 14 H 1.48504 * 109.47095 * 209.99347 * 12 10 8 15 15 H 1.48496 * 109.47190 * 329.99712 * 12 10 8 16 16 N 1.30289 * 107.30904 * 180.02562 * 5 4 3 17 17 N 1.28535 * 110.05418 * 359.97438 * 16 5 4 18 18 C 1.31216 * 109.85560 * 0.02562 * 17 16 5 19 19 N 1.38587 * 126.47258 * 180.02562 * 18 17 16 20 20 C 1.47166 * 110.99641 * 273.46429 * 19 18 17 21 21 C 1.52787 * 108.98966 * 180.09939 * 20 19 18 22 22 C 1.53398 * 113.49846 * 78.03012 * 21 20 19 23 23 C 1.53855 * 86.96699 * 89.41692 * 22 21 20 24 24 C 1.53375 * 113.54328 * 175.90891 * 21 20 19 25 25 O 1.42667 * 112.81920 * 307.03451 * 21 20 19 26 26 C 1.43178 * 113.43345 * 54.58643 * 25 21 20 27 27 C 1.46988 * 110.99803 * 37.02720 * 19 18 17 28 28 H 1.09006 * 109.45683 * 295.98236 * 27 19 18 29 29 C 1.52999 * 109.46730 * 55.94992 * 27 19 18 30 30 H 1.07996 * 120.00240 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99880 * 0.02562 * 1 2 3 32 32 H 1.08006 * 119.99587 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47028 * 1.46120 * 3 2 1 34 34 H 1.08996 * 109.46908 * 241.46577 * 3 2 1 35 35 H 1.08997 * 109.47080 * 29.71090 * 6 5 4 36 36 H 1.09000 * 109.47314 * 149.71901 * 6 5 4 37 37 H 1.08997 * 109.46938 * 299.99651 * 7 6 5 38 38 H 1.09000 * 109.46872 * 60.00103 * 7 6 5 39 39 H 0.97002 * 119.99598 * 179.97438 * 11 10 8 40 40 H 1.09001 * 109.55413 * 299.95209 * 20 19 18 41 41 H 1.08997 * 109.55081 * 60.25257 * 20 19 18 42 42 H 1.09003 * 113.63132 * 203.93761 * 22 21 20 43 43 H 1.08996 * 113.63237 * 334.90077 * 22 21 20 44 44 H 1.08994 * 113.60384 * 270.57499 * 23 22 21 45 45 H 1.09000 * 113.67478 * 139.71504 * 23 22 21 46 46 H 1.08997 * 113.63204 * 25.14964 * 24 21 20 47 47 H 1.09002 * 113.62650 * 156.10537 * 24 21 20 48 48 H 1.09011 * 109.50815 * 183.78697 * 26 25 21 49 49 H 1.09002 * 109.51161 * 63.65388 * 26 25 21 50 50 H 1.08999 * 109.46768 * 59.99979 * 29 27 19 51 51 H 1.08998 * 109.47518 * 180.02562 * 29 27 19 52 52 H 1.09005 * 109.46823 * 300.00039 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9321 1.3675 1.1782 5 6 4.2219 0.9248 1.2773 6 6 5.0309 0.2780 0.1826 7 6 4.8332 -1.2385 0.2305 8 6 5.6417 -1.8852 -0.8647 9 1 6.2366 -1.2756 -1.5286 10 6 5.6210 -3.2551 -1.0196 11 7 4.8962 -3.9974 -0.2113 12 14 6.6226 -4.0567 -2.3774 13 1 7.9777 -4.3840 -1.8657 14 1 5.9469 -5.3023 -2.8214 15 1 6.7394 -3.1210 -3.5246 16 7 4.6237 1.1704 2.4921 17 7 3.6829 1.7343 3.1621 18 6 2.6215 1.8794 2.4043 19 7 1.4135 2.4463 2.7784 20 6 0.5301 1.4449 3.3969 21 6 -0.7854 2.1164 3.7883 22 6 -1.7357 2.3365 2.6044 23 6 -2.3046 0.9393 2.9068 24 6 -1.8257 1.1421 4.3547 25 8 -0.5950 3.2803 4.5911 26 6 0.2792 4.2456 3.9962 27 6 1.6239 3.5841 3.6850 28 1 2.0781 3.2314 4.6110 29 6 2.5509 4.6025 3.0184 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3556 2.1334 0.0262 34 1 2.6704 1.3742 -0.9028 35 1 4.7015 0.6569 -0.7849 36 1 6.0861 0.5115 0.3242 37 1 5.1626 -1.6174 1.1979 38 1 3.7780 -1.4719 0.0888 39 1 4.8814 -4.9611 -0.3206 40 1 0.3327 0.6433 2.6851 41 1 1.0092 1.0354 4.2861 42 1 -2.4513 3.1433 2.7627 43 1 -1.2274 2.4024 1.6425 44 1 -1.7868 0.1349 2.3845 45 1 -3.3885 0.8778 2.8101 46 1 -1.3899 0.2479 4.8002 47 1 -2.5662 1.6187 4.9971 48 1 0.4324 5.0735 4.6886 49 1 -0.1649 4.6192 3.0736 50 1 2.0971 4.9550 2.0921 51 1 2.7073 5.4461 3.6907 52 1 3.5089 4.1318 2.7975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121521883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:44 Heat of formation + Delta-G solvation = 66.020653 kcal Electronic energy + Delta-G solvation = -32517.131077 eV Core-core repulsion = 28518.865830 eV Total energy + Delta-G solvation = -3998.265248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.11742 -41.66337 -38.48959 -37.30467 -36.79237 -35.87202 -33.94832 -33.57274 -32.76359 -30.50425 -28.21427 -27.70996 -27.45035 -26.77727 -26.53119 -24.37971 -23.82973 -23.16330 -22.06346 -21.22496 -20.64069 -19.59476 -18.73381 -18.34401 -18.11780 -17.38769 -17.15402 -16.57171 -16.46032 -16.14657 -16.01115 -15.97625 -15.54856 -15.31429 -14.87616 -14.77781 -14.56411 -14.28317 -14.15653 -13.50997 -13.38946 -13.26570 -13.20482 -13.01115 -12.90296 -12.85850 -12.69896 -12.54601 -12.47891 -12.40215 -12.26709 -11.99387 -11.79016 -11.70974 -11.68389 -11.61897 -11.31724 -11.21277 -11.06896 -10.70703 -10.57714 -10.54835 -10.22254 -9.66778 -8.21093 -6.32983 0.61837 0.92205 1.42000 1.43610 1.48819 1.54054 1.72309 2.40854 2.51278 2.70398 3.13388 3.37786 3.49166 3.53748 3.60810 3.65748 3.70801 3.80997 3.86575 3.89685 4.01532 4.11586 4.15680 4.16886 4.24739 4.42496 4.44714 4.49885 4.59408 4.64289 4.67341 4.71103 4.75275 4.84139 4.84542 4.87078 4.92178 4.96653 4.98120 5.05825 5.11899 5.14790 5.23266 5.40587 5.41804 5.44585 5.51694 5.56311 5.63723 5.68128 5.79046 6.11860 6.16450 6.17906 6.82476 7.36829 7.67513 8.90784 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003111 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.488741 B = 8997.683219 C =10027.569034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C 0.140 3.860 4 N -0.456 5.456 5 C 0.202 3.798 6 C -0.016 4.016 7 C 0.045 3.955 8 C -0.538 4.538 9 H 0.071 0.929 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.256 1.256 16 N -0.333 5.333 17 N -0.349 5.349 18 C 0.348 3.652 19 N -0.435 5.435 20 C 0.060 3.940 21 C 0.089 3.911 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.123 4.123 25 O -0.379 6.379 26 C 0.077 3.923 27 C 0.057 3.943 28 H 0.043 0.957 29 C -0.137 4.137 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.087 0.913 37 H -0.022 1.022 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.027 0.973 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 17.697 2.264 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.224 4.224 3 C 0.019 3.981 4 N -0.148 5.148 5 C -0.066 4.066 6 C -0.056 4.056 7 C 0.006 3.994 8 C -0.576 4.576 9 H 0.089 0.911 10 C -0.195 4.195 11 N -0.573 5.573 12 Si 0.790 3.210 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.180 1.180 16 N -0.173 5.173 17 N -0.192 5.192 18 C -0.009 4.009 19 N -0.161 5.161 20 C -0.068 4.068 21 C 0.049 3.951 22 C -0.178 4.178 23 C -0.171 4.171 24 C -0.160 4.160 25 O -0.297 6.297 26 C 0.000 4.000 27 C -0.051 4.051 28 H 0.061 0.939 29 C -0.194 4.194 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.106 0.894 37 H -0.003 1.003 38 H 0.019 0.981 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.142 0.858 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.275 17.830 3.256 25.739 hybrid contribution 0.838 -1.645 -0.784 2.005 sum -17.438 16.186 2.472 23.920 Atomic orbital electron populations 1.24164 0.94290 1.03836 0.94837 1.23053 0.97371 0.97233 1.04699 1.21193 0.93408 0.98044 0.85405 1.46462 1.11754 1.44943 1.11666 1.25352 0.84098 0.99881 0.97291 1.20164 0.97709 0.95579 0.92123 1.18851 0.95931 0.89278 0.95296 1.21582 1.28234 0.92502 1.15294 0.91050 1.25952 0.96585 0.98221 0.98743 1.70124 1.41807 1.05698 1.39671 0.85438 0.78331 0.77939 0.79299 1.20278 1.20990 1.17997 1.73942 1.23729 1.16697 1.02927 1.74430 0.99405 1.19199 1.26184 1.22409 0.94278 1.00235 0.83962 1.59152 1.05988 1.08187 1.42753 1.22537 0.92474 0.93998 0.97785 1.22826 0.91503 0.86870 0.93903 1.23388 0.97993 0.98543 0.97882 1.22751 1.02454 0.96992 0.94873 1.23086 0.96943 0.97449 0.98570 1.88017 1.66441 1.29040 1.46249 1.22844 0.85905 0.90881 1.00365 1.22417 0.98981 0.90113 0.93598 0.93900 1.21730 0.97644 0.98175 1.01894 0.87100 0.85319 0.89844 0.85384 0.87141 0.88591 0.89443 1.00334 0.98056 0.92870 0.88943 0.95452 0.88194 0.90316 0.89990 0.88786 0.91446 0.87773 0.85775 0.90319 0.90625 0.89100 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 13.80 67.78 0.94 -1.59 16 2 C -0.20 -5.45 9.85 25.64 0.25 -5.20 16 3 C 0.14 3.50 6.45 85.63 0.55 4.05 16 4 N -0.46 -15.18 2.79 -518.91 -1.45 -16.63 16 5 C 0.20 8.24 7.32 137.64 1.01 9.25 16 6 C -0.02 -0.66 5.53 29.85 0.17 -0.50 16 7 C 0.04 2.33 4.96 29.85 0.15 2.48 16 8 C -0.54 -29.46 9.11 25.60 0.23 -29.22 16 9 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 10 C 0.00 0.17 5.46 84.65 0.46 0.63 16 11 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 12 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 N -0.33 -15.12 12.18 -49.54 -0.60 -15.73 16 17 N -0.35 -14.39 10.91 -58.00 -0.63 -15.02 16 18 C 0.35 11.67 5.49 260.11 1.43 13.10 16 19 N -0.43 -11.05 4.59 -681.50 -3.13 -14.18 16 20 C 0.06 1.48 4.61 86.18 0.40 1.88 16 21 C 0.09 1.67 1.23 -10.61 -0.01 1.66 16 22 C -0.14 -1.88 7.13 31.02 0.22 -1.66 16 23 C -0.13 -1.65 7.73 31.17 0.24 -1.41 16 24 C -0.12 -1.94 7.50 31.01 0.23 -1.71 16 25 O -0.38 -7.75 10.58 -148.98 -1.58 -9.32 16 26 C 0.08 1.28 6.19 72.00 0.45 1.72 16 27 C 0.06 1.30 2.27 44.92 0.10 1.40 16 28 H 0.04 1.23 8.01 -2.38 -0.02 1.21 16 29 C -0.14 -2.88 8.98 71.98 0.65 -2.23 16 30 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.13 1.66 7.49 -2.91 -0.02 1.64 16 32 H 0.08 3.02 6.56 -2.91 -0.02 3.00 16 33 H 0.13 2.39 7.79 -2.38 -0.02 2.37 16 34 H 0.11 2.58 7.27 -2.39 -0.02 2.56 16 35 H 0.10 3.40 7.28 -2.39 -0.02 3.38 16 36 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 37 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H 0.00 0.06 6.65 -2.39 -0.02 0.05 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.09 2.30 6.80 -2.39 -0.02 2.29 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.03 7.74 -2.39 -0.02 1.01 16 44 H 0.08 1.09 7.63 -2.39 -0.02 1.07 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.12 1.52 8.14 -2.38 -0.02 1.51 16 49 H 0.08 1.07 7.95 -2.39 -0.02 1.06 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.03 0.89 6.55 -2.38 -0.02 0.87 16 Total: -1.00 -73.42 411.98 3.27 -70.15 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.89 Total: 18.87 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 7.46 Total: -7.35 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.53 Total: -117.56 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.58 Total: -9.32 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -73.42 3.27 -70.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121521883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.171 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds