Wall clock time and date at job start Wed Apr 1 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 C 1.50701 * 109.46685 * 240.00611 * 2 1 3 5 5 O 1.21280 * 120.00020 * 240.00048 * 4 2 1 6 6 N 1.34781 * 120.00199 * 60.00018 * 4 2 1 7 7 C 1.46500 * 119.99941 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.46505 * 180.02562 * 7 6 4 9 9 C 1.40074 * 126.12500 * 259.99285 * 8 7 6 10 10 N 1.31004 * 108.25661 * 180.02562 * 9 8 7 11 11 N 1.39748 * 108.17725 * 0.16860 * 10 9 8 12 12 C 1.34642 * 126.12733 * 80.00838 * 8 7 6 13 13 C 1.51039 * 127.90841 * 359.68898 * 12 8 7 14 14 N 1.47499 * 106.99866 * 169.43407 * 13 12 8 15 15 C 1.36929 * 121.01918 * 222.94334 * 14 13 12 16 16 H 1.08002 * 120.00041 * 155.22288 * 15 14 13 17 17 C 1.38814 * 119.99989 * 334.95723 * 15 14 13 18 18 N 1.31610 * 119.99753 * 347.66053 * 17 15 14 19 19 Si 1.86798 * 119.99910 * 167.66053 * 17 15 14 20 20 H 1.48496 * 109.47436 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47325 * 120.00209 * 19 17 15 22 22 H 1.48501 * 109.47150 * 240.00069 * 19 17 15 23 23 C 1.47094 * 117.96541 * 43.22059 * 14 13 12 24 24 C 1.46554 * 127.32221 * 179.44805 * 11 10 9 25 25 C 1.52993 * 109.47281 * 120.00930 * 2 1 3 26 26 C 1.54274 * 110.03093 * 297.16370 * 25 2 1 27 27 C 1.54885 * 104.19637 * 217.10691 * 26 25 2 28 28 C 1.54890 * 102.75007 * 37.93872 * 27 26 25 29 29 C 1.53875 * 110.03425 * 179.97438 * 25 2 1 30 30 H 1.09004 * 109.46784 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46972 * 59.98934 * 1 2 3 32 32 H 1.08998 * 109.46770 * 179.97438 * 1 2 3 33 33 H 0.97009 * 119.99745 * 0.02562 * 6 4 2 34 34 H 1.08991 * 109.46987 * 60.00292 * 7 6 4 35 35 H 1.09002 * 109.47403 * 299.99808 * 7 6 4 36 36 H 1.08001 * 125.86842 * 0.09325 * 9 8 7 37 37 H 1.09008 * 109.94657 * 50.07047 * 13 12 8 38 38 H 1.08991 * 109.95445 * 288.81159 * 13 12 8 39 39 H 0.97012 * 119.99830 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.51528 * 56.06076 * 23 14 13 41 41 H 1.09009 * 109.50983 * 176.21790 * 23 14 13 42 42 H 1.09005 * 109.50826 * 281.49598 * 24 11 10 43 43 H 1.09000 * 109.50814 * 41.63746 * 24 11 10 44 44 H 1.08999 * 110.01860 * 58.60550 * 25 2 1 45 45 H 1.08997 * 110.48606 * 335.78597 * 26 25 2 46 46 H 1.09003 * 110.48423 * 98.42835 * 26 25 2 47 47 H 1.09001 * 110.75668 * 279.63166 * 27 26 25 48 48 H 1.09001 * 110.91403 * 156.33008 * 27 26 25 49 49 H 1.08993 * 110.48885 * 203.37709 * 28 27 26 50 50 H 1.09006 * 110.59646 * 80.79000 * 28 27 26 51 51 H 1.08993 * 110.03335 * 238.56357 * 29 25 2 52 52 H 1.09003 * 110.02680 * 359.95551 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1195 6 7 1.7067 -0.2497 -2.4547 7 6 2.1954 -0.9399 -3.6509 8 6 1.6934 -0.2290 -4.8812 9 6 0.6013 -0.6137 -5.6695 10 7 0.4765 0.2492 -6.6472 11 7 1.4857 1.2068 -6.5149 12 6 2.2144 0.8896 -5.4199 13 6 3.3978 1.6908 -4.9309 14 7 3.7275 2.6630 -5.9900 15 6 5.0271 2.9008 -6.3499 16 1 5.2543 3.2742 -7.3375 17 6 6.0522 2.6670 -5.4434 18 7 5.7730 2.4537 -4.1751 19 14 7.8276 2.6554 -6.0239 20 1 7.8726 2.9188 -7.4847 21 1 8.5899 3.7088 -5.3068 22 1 8.4319 1.3285 -5.7420 23 6 2.6179 3.3740 -6.6435 24 6 1.7411 2.3552 -7.3888 25 6 2.0401 -0.7214 1.2491 26 6 1.5924 0.0358 2.5164 27 6 2.7936 -0.1006 3.4846 28 6 4.0124 0.0238 2.5369 29 6 3.5788 -0.7295 1.2618 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1493 0.5393 -2.5435 34 1 1.8324 -1.9676 -3.6511 35 1 3.2854 -0.9395 -3.6508 36 1 -0.0301 -1.4734 -5.4996 37 1 4.2470 1.0303 -4.7550 38 1 3.1373 2.2159 -4.0120 39 1 6.4894 2.2907 -3.5416 40 1 2.0207 3.8876 -5.8902 41 1 3.0176 4.1011 -7.3504 42 1 2.2570 2.0202 -8.2887 43 1 0.7947 2.8214 -7.6631 44 1 1.6615 -1.7433 1.2705 45 1 1.4040 1.0847 2.2876 46 1 0.7034 -0.4281 2.9438 47 1 2.7848 -1.0732 3.9766 48 1 2.7932 0.7032 4.2209 49 1 4.8894 -0.4486 2.9792 50 1 4.2171 1.0703 2.3108 51 1 3.9465 -1.7551 1.2905 52 1 3.9621 -0.2201 0.3776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128555376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:40 Heat of formation + Delta-G solvation = 42.094696 kcal Electronic energy + Delta-G solvation = -31473.858881 eV Core-core repulsion = 27474.556126 eV Total energy + Delta-G solvation = -3999.302755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.99224 -39.95977 -37.73753 -36.30202 -34.68984 -33.44490 -32.88543 -31.18721 -30.22134 -28.83146 -28.70783 -27.54288 -26.11710 -25.07269 -23.71214 -23.24107 -21.76402 -20.60633 -20.30655 -20.15956 -19.32184 -18.38801 -16.97493 -16.73907 -16.09954 -15.91635 -15.50185 -15.25223 -14.93430 -14.82430 -14.50650 -13.97575 -13.74954 -13.66906 -13.34509 -13.28137 -13.26238 -13.13612 -12.86812 -12.48108 -12.38102 -12.24817 -11.70288 -11.60225 -11.51595 -11.28914 -11.08950 -11.04618 -10.99713 -10.95075 -10.88195 -10.73535 -10.67876 -10.58143 -10.25077 -10.19040 -10.16645 -10.10237 -9.44975 -8.93185 -8.66248 -8.55267 -7.91291 -7.08440 -6.02532 -3.47268 2.42598 2.95817 2.98584 3.01912 3.27683 3.35787 3.37273 3.80129 4.29966 4.54080 4.61498 4.68688 4.95168 5.01114 5.06620 5.07533 5.12476 5.19973 5.37197 5.39956 5.50301 5.53772 5.56419 5.58234 5.61143 5.62106 5.66492 5.69429 5.73241 5.78559 5.81289 5.87033 5.93911 5.99188 6.08022 6.16932 6.19474 6.21833 6.31978 6.38303 6.40379 6.50079 6.52586 6.55975 6.79803 6.91896 7.09123 7.16277 7.56611 7.60519 7.87597 8.08836 8.23549 8.56704 8.91244 9.52677 10.05623 11.08126 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.003468 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.306941 B = 8070.855343 C =10220.587358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.543 6.543 6 N -0.719 5.719 7 C 0.210 3.790 8 C -0.288 4.288 9 C 0.056 3.944 10 N -0.319 5.319 11 N -0.358 5.358 12 C 0.119 3.881 13 C 0.231 3.769 14 N -0.597 5.597 15 C -0.263 4.263 16 H 0.074 0.926 17 C 0.009 3.991 18 N -0.904 5.904 19 Si 0.910 3.090 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.286 1.286 23 C 0.129 3.871 24 C 0.113 3.887 25 C -0.069 4.069 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.109 4.109 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.175 0.825 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.259 0.741 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 -2.854 9.387 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.420 6.420 6 N -0.370 5.370 7 C 0.086 3.914 8 C -0.300 4.300 9 C -0.131 4.131 10 N -0.139 5.139 11 N -0.139 5.139 12 C -0.013 4.013 13 C 0.105 3.895 14 N -0.320 5.320 15 C -0.392 4.392 16 H 0.091 0.909 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.739 3.261 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.213 1.213 23 C 0.001 3.999 24 C -0.010 4.010 25 C -0.088 4.088 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.167 4.167 29 C -0.146 4.146 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.192 0.808 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.712 -3.127 8.394 13.964 hybrid contribution 1.026 0.145 0.184 1.053 sum -9.685 -2.982 8.578 13.277 Atomic orbital electron populations 1.21789 0.93308 1.02501 1.02476 1.21489 0.97093 1.00965 0.93244 0.88504 1.20547 0.80090 0.84676 0.84544 1.90678 1.37854 1.26632 1.86838 1.46237 1.53347 1.31927 1.05513 1.19282 0.98705 0.93846 0.79518 1.19450 1.04226 1.02009 1.04307 1.23666 0.97448 0.98733 0.93266 1.77162 1.11034 1.01919 1.23745 1.48489 1.22273 1.21602 1.21567 1.22612 0.95383 0.95576 0.87712 1.19941 0.89977 0.89743 0.89863 1.44221 1.01968 1.43385 1.42381 1.19214 0.81287 1.42051 0.96637 0.90851 1.25071 0.98696 1.00491 0.94794 1.69913 1.31867 1.51954 1.01071 0.86117 0.84251 0.77578 0.78172 1.20178 1.21412 1.21256 1.21363 0.89942 0.92254 0.96360 1.22621 1.00413 0.84744 0.93266 1.21551 0.96075 0.99073 0.92052 1.22459 0.97734 1.00392 0.95099 1.22478 0.95105 1.01257 0.97370 1.22442 0.97529 1.00645 0.96075 1.22109 0.94361 1.00812 0.97351 0.91545 0.92196 0.92237 0.76834 0.91541 0.90978 0.80827 0.87102 0.92687 0.93080 0.94620 0.89726 0.90629 0.90251 0.90673 0.91433 0.91872 0.91776 0.91938 0.92078 0.91777 0.91636 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.89 37.16 0.33 -0.98 16 2 C -0.11 -1.22 2.02 -91.77 -0.19 -1.41 16 3 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 4 C 0.52 7.66 6.54 -10.98 -0.07 7.58 16 5 O -0.54 -9.84 14.66 5.56 0.08 -9.76 16 6 N -0.72 -10.40 5.44 -61.47 -0.33 -10.73 16 7 C 0.21 3.40 5.95 -5.19 -0.03 3.37 16 8 C -0.29 -4.97 5.46 -105.20 -0.57 -5.54 16 9 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 10 N -0.32 -5.87 12.61 30.70 0.39 -5.48 16 11 N -0.36 -6.84 4.03 -56.70 -0.23 -7.07 16 12 C 0.12 2.34 6.71 -82.17 -0.55 1.79 16 13 C 0.23 5.17 5.08 -4.48 -0.02 5.15 16 14 N -0.60 -13.78 3.01 -172.69 -0.52 -14.30 16 15 C -0.26 -6.68 9.67 -15.06 -0.15 -6.83 16 16 H 0.07 1.82 7.86 -52.49 -0.41 1.40 16 17 C 0.01 0.23 5.07 -17.43 -0.09 0.14 16 18 N -0.90 -24.39 10.94 55.49 0.61 -23.78 16 19 Si 0.91 20.74 29.57 -169.99 -5.03 15.71 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.13 2.39 6.52 -3.35 -0.02 2.37 16 24 C 0.11 1.92 7.46 -3.65 -0.03 1.89 16 25 C -0.07 -0.78 2.12 -89.50 -0.19 -0.97 16 26 C -0.12 -1.09 5.32 -25.07 -0.13 -1.22 16 27 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 28 C -0.13 -1.40 6.83 -25.05 -0.17 -1.57 16 29 C -0.11 -1.41 5.08 -25.59 -0.13 -1.54 16 30 H 0.07 0.51 7.27 -51.93 -0.38 0.13 16 31 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.40 5.24 7.88 -40.82 -0.32 4.92 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.11 2.81 6.43 -51.92 -0.33 2.48 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.26 6.84 8.31 -40.81 -0.34 6.50 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.44 7.94 -51.92 -0.41 1.03 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 45 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -29.71 407.27 -10.20 -39.91 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.91 Total: 7.76 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.39 Total: 1.60 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.09 Total: -61.36 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.71 -10.20 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128555376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.000 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds