Wall clock time and date at job start Wed Apr 1 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 C 1.50701 * 109.46685 * 240.00611 * 2 1 3 5 5 O 1.21280 * 120.00020 * 240.00048 * 4 2 1 6 6 N 1.34781 * 120.00199 * 60.00018 * 4 2 1 7 7 C 1.46500 * 119.99941 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.46505 * 180.02562 * 7 6 4 9 9 C 1.40074 * 126.12500 * 259.99285 * 8 7 6 10 10 N 1.31004 * 108.25661 * 180.02562 * 9 8 7 11 11 N 1.39748 * 108.17725 * 0.16860 * 10 9 8 12 12 C 1.34642 * 126.12733 * 80.00838 * 8 7 6 13 13 C 1.51039 * 127.90841 * 359.68898 * 12 8 7 14 14 N 1.47499 * 106.99866 * 169.43407 * 13 12 8 15 15 C 1.36929 * 121.01918 * 222.94334 * 14 13 12 16 16 H 1.08002 * 120.00041 * 155.22288 * 15 14 13 17 17 C 1.38814 * 119.99989 * 334.95723 * 15 14 13 18 18 N 1.31610 * 119.99753 * 347.66053 * 17 15 14 19 19 Si 1.86798 * 119.99910 * 167.66053 * 17 15 14 20 20 H 1.48496 * 109.47436 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47325 * 120.00209 * 19 17 15 22 22 H 1.48501 * 109.47150 * 240.00069 * 19 17 15 23 23 C 1.47094 * 117.96541 * 43.22059 * 14 13 12 24 24 C 1.46554 * 127.32221 * 179.44805 * 11 10 9 25 25 C 1.52993 * 109.47281 * 120.00930 * 2 1 3 26 26 C 1.54274 * 110.03093 * 297.16370 * 25 2 1 27 27 C 1.54885 * 104.19637 * 217.10691 * 26 25 2 28 28 C 1.54890 * 102.75007 * 37.93872 * 27 26 25 29 29 C 1.53875 * 110.03425 * 179.97438 * 25 2 1 30 30 H 1.09004 * 109.46784 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46972 * 59.98934 * 1 2 3 32 32 H 1.08998 * 109.46770 * 179.97438 * 1 2 3 33 33 H 0.97009 * 119.99745 * 0.02562 * 6 4 2 34 34 H 1.08991 * 109.46987 * 60.00292 * 7 6 4 35 35 H 1.09002 * 109.47403 * 299.99808 * 7 6 4 36 36 H 1.08001 * 125.86842 * 0.09325 * 9 8 7 37 37 H 1.09008 * 109.94657 * 50.07047 * 13 12 8 38 38 H 1.08991 * 109.95445 * 288.81159 * 13 12 8 39 39 H 0.97012 * 119.99830 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.51528 * 56.06076 * 23 14 13 41 41 H 1.09009 * 109.50983 * 176.21790 * 23 14 13 42 42 H 1.09005 * 109.50826 * 281.49598 * 24 11 10 43 43 H 1.09000 * 109.50814 * 41.63746 * 24 11 10 44 44 H 1.08999 * 110.01860 * 58.60550 * 25 2 1 45 45 H 1.08997 * 110.48606 * 335.78597 * 26 25 2 46 46 H 1.09003 * 110.48423 * 98.42835 * 26 25 2 47 47 H 1.09001 * 110.75668 * 279.63166 * 27 26 25 48 48 H 1.09001 * 110.91403 * 156.33008 * 27 26 25 49 49 H 1.08993 * 110.48885 * 203.37709 * 28 27 26 50 50 H 1.09006 * 110.59646 * 80.79000 * 28 27 26 51 51 H 1.08993 * 110.03335 * 238.56357 * 29 25 2 52 52 H 1.09003 * 110.02680 * 359.95551 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1195 6 7 1.7067 -0.2497 -2.4547 7 6 2.1954 -0.9399 -3.6509 8 6 1.6934 -0.2290 -4.8812 9 6 0.6013 -0.6137 -5.6695 10 7 0.4765 0.2492 -6.6472 11 7 1.4857 1.2068 -6.5149 12 6 2.2144 0.8896 -5.4199 13 6 3.3978 1.6908 -4.9309 14 7 3.7275 2.6630 -5.9900 15 6 5.0271 2.9008 -6.3499 16 1 5.2543 3.2742 -7.3375 17 6 6.0522 2.6670 -5.4434 18 7 5.7730 2.4537 -4.1751 19 14 7.8276 2.6554 -6.0239 20 1 7.8726 2.9188 -7.4847 21 1 8.5899 3.7088 -5.3068 22 1 8.4319 1.3285 -5.7420 23 6 2.6179 3.3740 -6.6435 24 6 1.7411 2.3552 -7.3888 25 6 2.0401 -0.7214 1.2491 26 6 1.5924 0.0358 2.5164 27 6 2.7936 -0.1006 3.4846 28 6 4.0124 0.0238 2.5369 29 6 3.5788 -0.7295 1.2618 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1493 0.5393 -2.5435 34 1 1.8324 -1.9676 -3.6511 35 1 3.2854 -0.9395 -3.6508 36 1 -0.0301 -1.4734 -5.4996 37 1 4.2470 1.0303 -4.7550 38 1 3.1373 2.2159 -4.0120 39 1 6.4894 2.2907 -3.5416 40 1 2.0207 3.8876 -5.8902 41 1 3.0176 4.1011 -7.3504 42 1 2.2570 2.0202 -8.2887 43 1 0.7947 2.8214 -7.6631 44 1 1.6615 -1.7433 1.2705 45 1 1.4040 1.0847 2.2876 46 1 0.7034 -0.4281 2.9438 47 1 2.7848 -1.0732 3.9766 48 1 2.7932 0.7032 4.2209 49 1 4.8894 -0.4486 2.9792 50 1 4.2171 1.0703 2.3108 51 1 3.9465 -1.7551 1.2905 52 1 3.9621 -0.2201 0.3776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128555376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:39 Heat of formation + Delta-G solvation = 25.198636 kcal Electronic energy + Delta-G solvation = -31474.591550 eV Core-core repulsion = 27474.556126 eV Total energy + Delta-G solvation = -4000.035423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.43542 -41.09699 -38.74896 -37.96053 -36.05236 -34.70238 -34.23854 -32.78637 -31.82235 -30.25726 -29.59337 -28.43757 -27.79931 -26.47754 -25.20472 -24.45112 -23.30121 -21.60588 -21.46351 -21.38238 -20.40620 -19.91128 -18.55894 -18.18592 -17.49227 -17.14689 -16.71202 -16.59809 -16.33438 -15.96894 -15.79467 -15.51671 -15.29430 -15.06239 -14.80656 -14.66350 -14.25178 -14.19056 -13.98132 -13.91939 -13.54344 -13.34978 -13.07283 -13.04975 -12.95015 -12.78270 -12.62907 -12.42966 -12.33268 -12.05403 -11.94178 -11.89380 -11.84543 -11.83307 -11.61854 -11.52298 -11.42029 -11.23585 -10.81988 -10.67071 -10.07087 -9.96048 -9.37944 -8.95072 -7.99732 -5.45421 0.92800 1.43516 1.47033 1.55019 1.59442 1.66193 1.78093 2.43168 2.58453 3.20451 3.42110 3.59695 3.62040 3.74372 3.79352 3.83006 4.01879 4.15337 4.19510 4.23418 4.25270 4.28879 4.37051 4.44957 4.53932 4.62837 4.74056 4.75838 4.78277 4.79422 4.87214 4.87274 4.88023 4.93138 4.97098 5.01854 5.03587 5.14831 5.19685 5.24158 5.28311 5.32987 5.37543 5.47080 5.51456 5.52509 5.56998 5.60403 5.75240 6.08950 6.19640 6.67870 6.79792 6.98257 7.36423 7.63907 8.15264 9.09186 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.003468 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.306941 B = 8070.855343 C =10220.587358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.100 0.900 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.713 5.713 7 C 0.218 3.782 8 C -0.274 4.274 9 C 0.067 3.933 10 N -0.326 5.326 11 N -0.367 5.367 12 C 0.095 3.905 13 C 0.251 3.749 14 N -0.617 5.617 15 C -0.266 4.266 16 H 0.080 0.920 17 C -0.042 4.042 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.296 1.296 23 C 0.129 3.871 24 C 0.117 3.883 25 C -0.067 4.067 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.111 4.111 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.214 0.786 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.252 0.748 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.046 0.954 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 -2.485 9.459 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.118 0.882 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.364 5.364 7 C 0.093 3.907 8 C -0.287 4.287 9 C -0.120 4.120 10 N -0.146 5.146 11 N -0.148 5.148 12 C -0.037 4.037 13 C 0.124 3.876 14 N -0.340 5.340 15 C -0.396 4.396 16 H 0.097 0.903 17 C -0.238 4.238 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.216 1.216 22 H -0.223 1.223 23 C 0.002 3.998 24 C -0.006 4.006 25 C -0.086 4.086 26 C -0.150 4.150 27 C -0.157 4.157 28 C -0.167 4.167 29 C -0.148 4.148 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.229 -2.720 8.432 15.922 hybrid contribution 1.785 -0.005 0.111 1.789 sum -11.444 -2.725 8.543 14.539 Atomic orbital electron populations 1.21782 0.90785 1.02929 1.03945 1.21507 0.99037 1.00330 0.91282 0.88234 1.21250 0.79245 0.84272 0.85429 1.90658 1.39485 1.28541 1.87369 1.46144 1.53162 1.32011 1.05067 1.19099 0.96781 0.94744 0.80062 1.19545 1.04038 1.00901 1.04178 1.24229 0.96914 0.99083 0.91737 1.77157 1.10837 1.02179 1.24420 1.48677 1.22354 1.22316 1.21473 1.22230 0.95469 0.96689 0.89272 1.19342 0.89697 0.89139 0.89411 1.44450 1.02525 1.44357 1.42655 1.19540 0.82590 1.40731 0.96718 0.90268 1.25747 1.01936 1.01158 0.94957 1.70068 1.32191 1.53547 1.01922 0.85229 0.80363 0.76695 0.78307 1.18802 1.21605 1.22305 1.21531 0.88896 0.92817 0.96581 1.22616 1.01607 0.83987 0.92399 1.21548 0.94539 0.99137 0.93395 1.22448 0.98345 1.00652 0.93506 1.22480 0.93801 1.02244 0.97212 1.22440 0.98735 1.00038 0.95477 1.22072 0.96029 0.99557 0.97190 0.89265 0.91567 0.92299 0.75867 0.90115 0.94349 0.76923 0.91007 0.94832 0.93909 0.94092 0.88204 0.90600 0.86969 0.91525 0.90526 0.89901 0.91253 0.90254 0.91909 0.92014 0.93470 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.89 71.99 0.64 -1.55 16 2 C -0.10 -2.26 2.02 -11.54 -0.02 -2.28 16 3 H 0.10 2.21 8.12 -2.39 -0.02 2.19 16 4 C 0.51 15.58 6.54 87.66 0.57 16.15 16 5 O -0.58 -22.13 14.66 -3.03 -0.04 -22.17 16 6 N -0.71 -20.91 5.44 -466.78 -2.54 -23.45 16 7 C 0.22 7.17 5.95 85.63 0.51 7.68 16 8 C -0.27 -9.33 5.46 -20.24 -0.11 -9.44 16 9 C 0.07 2.00 11.97 85.26 1.02 3.03 16 10 N -0.33 -11.20 12.61 -56.80 -0.72 -11.91 16 11 N -0.37 -13.48 4.03 -333.29 -1.34 -14.82 16 12 C 0.09 3.74 6.71 41.31 0.28 4.02 16 13 C 0.25 11.69 5.08 85.55 0.43 12.13 16 14 N -0.62 -28.85 3.01 -700.26 -2.10 -30.95 16 15 C -0.27 -13.69 9.67 84.04 0.81 -12.87 16 16 H 0.08 3.89 7.86 -2.91 -0.02 3.87 16 17 C -0.04 -2.23 5.07 84.86 0.43 -1.80 16 18 N -0.93 -52.57 10.94 21.65 0.24 -52.33 16 19 Si 0.97 43.53 29.57 68.60 2.03 45.56 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 C 0.13 4.63 6.52 86.50 0.56 5.20 16 24 C 0.12 3.72 7.46 86.61 0.65 4.37 16 25 C -0.07 -1.51 2.12 -10.07 -0.02 -1.53 16 26 C -0.11 -1.79 5.32 31.67 0.17 -1.62 16 27 C -0.12 -1.98 6.91 31.88 0.22 -1.76 16 28 C -0.13 -2.81 6.83 31.69 0.22 -2.60 16 29 C -0.11 -3.03 5.08 31.34 0.16 -2.87 16 30 H 0.09 1.06 7.27 -2.39 -0.02 1.04 16 31 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 10.57 7.88 -92.70 -0.73 9.84 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.07 3.89 6.43 -2.38 -0.02 3.88 16 38 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.25 14.00 8.31 -92.70 -0.77 13.22 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 3.24 7.94 -2.38 -0.02 3.23 16 42 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 45 H 0.08 1.11 7.75 -2.39 -0.02 1.10 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.03 1.13 6.90 -2.39 -0.02 1.11 16 Total: -1.00 -66.88 407.27 2.21 -64.67 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.18 Total: 31.15 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.52 Total: 14.25 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -6.47 Total: -133.47 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.88 2.21 -64.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128555376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.868 kcal (2) G-P(sol) polarization free energy of solvation -66.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds