Wall clock time and date at job start Wed Apr 1 2020 03:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46087 * 2 1 4 4 C 1.53041 * 109.44873 * 119.96917 * 2 1 3 5 5 C 1.53624 * 109.24356 * 58.52297 * 4 2 1 6 6 N 1.46927 * 108.53943 * 54.85299 * 5 4 2 7 7 C 1.34780 * 120.62597 * 126.37272 * 6 5 4 8 8 O 1.21629 * 120.00006 * 185.98051 * 7 6 5 9 9 C 1.47162 * 120.00287 * 5.97572 * 7 6 5 10 10 C 1.38401 * 126.88276 * 20.38763 * 9 7 6 11 11 C 1.39676 * 105.36138 * 179.97438 * 10 9 7 12 12 N 1.30860 * 107.85786 * 359.77971 * 11 10 9 13 13 N 1.28445 * 110.92972 * 0.37598 * 12 11 10 14 14 C 1.46497 * 125.19308 * 179.87572 * 13 12 11 15 15 C 1.53784 * 113.61160 * 66.44162 * 14 13 12 16 16 C 1.53790 * 87.17100 * 270.84151 * 15 14 13 17 17 C 1.53790 * 113.61239 * 328.94654 * 14 13 12 18 18 C 1.46923 * 118.74281 * 306.09541 * 6 5 4 19 19 C 1.53037 * 109.45838 * 240.02972 * 2 1 3 20 20 H 1.08993 * 109.50115 * 181.40303 * 19 2 1 21 21 C 1.53004 * 109.52309 * 61.32637 * 19 2 1 22 22 N 1.46500 * 109.47243 * 175.14843 * 21 19 2 23 23 C 1.36931 * 120.00371 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99823 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00375 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99600 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00368 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46822 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47268 * 119.99664 * 27 25 23 30 30 H 1.48501 * 109.47095 * 239.99944 * 27 25 23 31 31 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46583 * 299.96956 * 1 2 3 33 33 H 1.09000 * 109.47198 * 59.96823 * 1 2 3 34 34 H 1.09001 * 109.49320 * 178.59853 * 4 2 1 35 35 H 1.08996 * 109.49653 * 298.66370 * 4 2 1 36 36 H 1.08997 * 109.73818 * 295.12192 * 5 4 2 37 37 H 1.08997 * 109.66622 * 174.54855 * 5 4 2 38 38 H 1.08006 * 127.31994 * 0.02562 * 10 9 7 39 39 H 1.07997 * 126.07005 * 179.97438 * 11 10 9 40 40 H 1.08991 * 112.85525 * 197.64149 * 14 13 12 41 41 H 1.09001 * 113.61359 * 25.42860 * 15 14 13 42 42 H 1.08997 * 113.61534 * 156.25463 * 15 14 13 43 43 H 1.08996 * 113.60960 * 89.16016 * 16 15 14 44 44 H 1.08999 * 113.61252 * 220.06117 * 16 15 14 45 45 H 1.08997 * 113.61058 * 203.66081 * 17 14 13 46 46 H 1.08994 * 113.61433 * 334.47884 * 17 14 13 47 47 H 1.08997 * 109.58473 * 173.64969 * 18 6 5 48 48 H 1.09007 * 109.58118 * 294.07308 * 18 6 5 49 49 H 1.09006 * 109.47154 * 295.14071 * 21 19 2 50 50 H 1.09000 * 109.47433 * 55.14696 * 21 19 2 51 51 H 0.97007 * 119.99930 * 359.97438 * 22 21 19 52 52 H 0.97007 * 119.99606 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 1.4941 -2.1569 1.2643 6 7 1.8620 -2.8089 0.0000 7 6 2.5148 -3.9880 0.0001 8 8 2.9098 -4.4645 -1.0470 9 6 2.7498 -4.6990 1.2670 10 6 2.0623 -4.5271 2.4558 11 6 2.6490 -5.4205 3.3550 12 7 3.5998 -6.0599 2.7227 13 7 3.6897 -5.6611 1.5050 14 6 4.6497 -6.1656 0.5201 15 6 4.4195 -7.6359 0.1326 16 6 5.3453 -8.0097 1.3024 17 6 5.9839 -6.6187 1.1364 18 6 1.4993 -2.1541 -1.2643 19 6 2.0399 -0.7208 -1.2500 20 1 3.1295 -0.7431 -1.2382 21 6 1.5578 0.0192 -2.4994 22 7 2.1407 -0.6028 -3.6908 23 6 1.8496 -0.1074 -4.9338 24 1 1.1906 0.7421 -5.0358 25 6 2.4024 -0.6965 -6.0627 26 7 3.2060 -1.7314 -5.9383 27 14 2.0059 -0.0203 -7.7582 28 1 1.0849 1.1372 -7.6266 29 1 3.2599 0.4174 -8.4223 30 1 1.3571 -1.0782 -8.5738 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 3.1293 -0.7431 1.2384 35 1 1.6960 -0.1932 2.1398 36 1 0.4088 -2.1374 1.3630 37 1 1.9292 -2.7064 2.0990 38 1 1.2452 -3.8472 2.6473 39 1 2.3660 -5.5612 4.3877 40 1 4.7661 -5.5015 -0.3362 41 1 3.3898 -7.9670 0.2678 42 1 4.8237 -7.8982 -0.8450 43 1 4.8215 -8.1394 2.2494 44 1 6.0237 -8.8324 1.0766 45 1 6.8169 -6.6033 0.4337 46 1 6.2177 -6.1276 2.0809 47 1 1.9379 -2.7018 -2.0983 48 1 0.4143 -2.1345 -1.3674 49 1 0.4705 -0.0345 -2.5567 50 1 1.8677 1.0629 -2.4458 51 1 2.7330 -1.3656 -3.5992 52 1 3.5926 -2.1428 -6.7272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132830666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:44 Heat of formation + Delta-G solvation = 94.448070 kcal Electronic energy + Delta-G solvation = -31798.194077 eV Core-core repulsion = 27801.161535 eV Total energy + Delta-G solvation = -3997.032542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.85541 -40.20141 -38.60248 -37.97804 -35.06077 -33.65794 -32.00414 -31.73410 -31.08952 -29.64231 -27.69951 -26.02418 -25.95527 -25.51297 -25.00799 -23.23123 -22.53244 -21.84742 -21.16687 -20.86598 -18.90455 -18.18561 -17.23534 -16.95666 -16.55326 -16.20899 -15.74900 -15.55162 -15.12779 -15.06075 -14.87476 -14.55167 -14.29684 -13.95218 -13.70438 -13.54505 -13.35687 -13.13262 -12.90336 -12.69554 -12.65695 -12.51828 -12.42818 -11.83322 -11.63554 -11.28497 -11.18648 -11.07280 -10.93835 -10.84153 -10.81986 -10.77124 -10.69838 -10.52350 -10.25174 -10.17609 -9.96738 -9.80663 -9.59258 -9.29752 -9.05666 -8.84194 -8.48014 -6.87501 -5.71077 -3.00581 1.19828 2.15555 2.45827 3.02607 3.15754 3.46010 3.51104 3.53755 4.05781 4.28020 4.30885 4.55922 4.60599 4.61659 4.74259 4.80772 4.86428 4.90334 4.98849 5.15191 5.26208 5.27918 5.37926 5.44071 5.44451 5.51008 5.52921 5.59613 5.61986 5.67392 5.68230 5.70526 5.70874 5.77861 5.82088 5.89636 5.95733 6.03150 6.04476 6.14218 6.31867 6.33119 6.35029 6.36481 6.55745 6.62190 6.68983 6.77765 6.89714 7.38911 7.74111 7.93164 8.14936 8.46675 9.57842 10.15893 10.50011 11.51267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.003142 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.312601 B = 8909.949320 C =11049.391224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.074 3.926 6 N -0.591 5.591 7 C 0.582 3.418 8 O -0.527 6.527 9 C -0.021 4.021 10 C -0.208 4.208 11 C -0.007 4.007 12 N -0.277 5.277 13 N -0.237 5.237 14 C 0.112 3.888 15 C -0.139 4.139 16 C -0.138 4.138 17 C -0.137 4.137 18 C 0.122 3.878 19 C -0.101 4.101 20 H 0.073 0.927 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.132 0.868 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.021 0.979 51 H 0.385 0.615 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -6.508 23.070 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.048 4.048 6 N -0.324 5.324 7 C 0.368 3.632 8 O -0.404 6.404 9 C -0.149 4.149 10 C -0.237 4.237 11 C -0.182 4.182 12 N -0.109 5.109 13 N -0.024 5.024 14 C 0.011 3.989 15 C -0.177 4.177 16 C -0.176 4.176 17 C -0.175 4.175 18 C 0.001 3.999 19 C -0.121 4.121 20 H 0.092 0.908 21 C 0.033 3.967 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.122 0.878 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.082 -7.532 22.386 23.619 hybrid contribution -0.721 0.857 -1.024 1.517 sum -0.639 -6.676 21.362 22.390 Atomic orbital electron populations 1.21990 0.95205 1.01967 1.01829 1.21087 0.96028 0.99410 0.93955 0.90832 1.22013 1.01112 0.95021 0.98427 1.22758 1.00638 0.94333 0.87109 1.47807 1.56499 1.19733 1.08333 1.16995 0.78693 0.81064 0.86469 1.90870 1.50356 1.66655 1.32476 1.21509 0.97693 0.98619 0.97121 1.22564 1.04701 1.04678 0.91716 1.23598 0.96230 0.97494 1.00917 1.73123 1.21773 1.23319 0.92640 1.45404 1.24046 1.25458 1.07521 1.22720 0.88322 0.98072 0.89781 1.23250 1.01329 0.93155 0.99974 1.23001 0.98481 0.96675 0.99399 1.23225 0.95132 0.97218 1.01961 1.21824 1.00019 0.93063 0.85033 1.21681 1.00907 0.94231 0.95272 0.90824 1.20682 0.96003 0.94732 0.85320 1.42433 1.57013 1.37547 1.00818 1.19240 1.23277 1.10878 0.83761 0.91201 1.24752 1.00067 0.98321 0.97798 1.69689 1.35562 1.24149 1.28366 0.86146 0.77382 0.77964 0.84868 1.20602 1.21926 1.21893 0.92450 0.93098 0.91782 0.91590 0.90780 0.90812 0.87262 0.81048 0.79790 0.85017 0.90858 0.87873 0.88880 0.91093 0.88154 0.90278 0.87757 0.91020 0.95894 0.96132 0.78126 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.11 37.16 0.30 -1.35 16 2 C -0.09 -1.03 2.71 -90.58 -0.25 -1.27 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.27 5.64 -26.39 -0.15 -1.41 16 5 C 0.07 0.74 4.81 -3.48 -0.02 0.72 16 6 N -0.59 -8.29 2.97 -173.87 -0.52 -8.81 16 7 C 0.58 9.27 7.58 -12.64 -0.10 9.17 16 8 O -0.53 -10.38 14.43 5.25 0.08 -10.30 16 9 C -0.02 -0.28 6.62 -82.06 -0.54 -0.82 16 10 C -0.21 -2.14 8.72 -38.98 -0.34 -2.47 16 11 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 12 N -0.28 -3.34 10.13 30.59 0.31 -3.03 16 13 N -0.24 -3.12 3.48 -49.91 -0.17 -3.30 16 14 C 0.11 1.39 4.35 -67.11 -0.29 1.10 16 15 C -0.14 -1.50 7.87 -25.91 -0.20 -1.71 16 16 C -0.14 -1.29 7.70 -25.82 -0.20 -1.49 16 17 C -0.14 -1.35 7.56 -25.82 -0.20 -1.54 16 18 C 0.12 2.01 5.06 -3.71 -0.02 1.99 16 19 C -0.10 -1.62 2.15 -90.50 -0.19 -1.82 16 20 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 21 C 0.16 3.17 5.19 -4.04 -0.02 3.15 16 22 N -0.73 -18.75 5.38 -59.91 -0.32 -19.07 16 23 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 27 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 31 H 0.06 0.62 4.96 -51.93 -0.26 0.36 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.63 6.68 -51.93 -0.35 0.28 16 37 H 0.11 0.95 3.57 -51.93 -0.19 0.77 16 38 H 0.17 1.28 5.75 -52.48 -0.30 0.98 16 39 H 0.19 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.88 6.47 -51.93 -0.34 1.54 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.95 7.22 -51.93 -0.37 0.58 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 47 H 0.10 2.16 6.20 -51.93 -0.32 1.84 16 48 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 49 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.38 10.55 6.89 -40.82 -0.28 10.27 16 52 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -33.82 393.35 -9.73 -43.54 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -8.06 Total: 10.86 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.67 Total: -5.48 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.02 Total: -62.28 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.82 -9.73 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132830666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.992 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds