Wall clock time and date at job start Wed Apr 1 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46087 * 2 1 4 4 C 1.53041 * 109.44873 * 119.96917 * 2 1 3 5 5 C 1.53624 * 109.24356 * 58.52297 * 4 2 1 6 6 N 1.46927 * 108.53943 * 54.85299 * 5 4 2 7 7 C 1.34780 * 120.62597 * 126.37272 * 6 5 4 8 8 O 1.21629 * 120.00006 * 185.98051 * 7 6 5 9 9 C 1.47162 * 120.00287 * 5.97572 * 7 6 5 10 10 C 1.38401 * 126.88276 * 20.38763 * 9 7 6 11 11 C 1.39676 * 105.36138 * 179.97438 * 10 9 7 12 12 N 1.30860 * 107.85786 * 359.77971 * 11 10 9 13 13 N 1.28445 * 110.92972 * 0.37598 * 12 11 10 14 14 C 1.46497 * 125.19308 * 179.87572 * 13 12 11 15 15 C 1.53784 * 113.61160 * 66.44162 * 14 13 12 16 16 C 1.53790 * 87.17100 * 270.84151 * 15 14 13 17 17 C 1.53790 * 113.61239 * 328.94654 * 14 13 12 18 18 C 1.46923 * 118.74281 * 306.09541 * 6 5 4 19 19 C 1.53037 * 109.45838 * 240.02972 * 2 1 3 20 20 H 1.08993 * 109.50115 * 181.40303 * 19 2 1 21 21 C 1.53004 * 109.52309 * 61.32637 * 19 2 1 22 22 N 1.46500 * 109.47243 * 175.14843 * 21 19 2 23 23 C 1.36931 * 120.00371 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99823 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00375 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99600 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00368 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46822 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47268 * 119.99664 * 27 25 23 30 30 H 1.48501 * 109.47095 * 239.99944 * 27 25 23 31 31 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46583 * 299.96956 * 1 2 3 33 33 H 1.09000 * 109.47198 * 59.96823 * 1 2 3 34 34 H 1.09001 * 109.49320 * 178.59853 * 4 2 1 35 35 H 1.08996 * 109.49653 * 298.66370 * 4 2 1 36 36 H 1.08997 * 109.73818 * 295.12192 * 5 4 2 37 37 H 1.08997 * 109.66622 * 174.54855 * 5 4 2 38 38 H 1.08006 * 127.31994 * 0.02562 * 10 9 7 39 39 H 1.07997 * 126.07005 * 179.97438 * 11 10 9 40 40 H 1.08991 * 112.85525 * 197.64149 * 14 13 12 41 41 H 1.09001 * 113.61359 * 25.42860 * 15 14 13 42 42 H 1.08997 * 113.61534 * 156.25463 * 15 14 13 43 43 H 1.08996 * 113.60960 * 89.16016 * 16 15 14 44 44 H 1.08999 * 113.61252 * 220.06117 * 16 15 14 45 45 H 1.08997 * 113.61058 * 203.66081 * 17 14 13 46 46 H 1.08994 * 113.61433 * 334.47884 * 17 14 13 47 47 H 1.08997 * 109.58473 * 173.64969 * 18 6 5 48 48 H 1.09007 * 109.58118 * 294.07308 * 18 6 5 49 49 H 1.09006 * 109.47154 * 295.14071 * 21 19 2 50 50 H 1.09000 * 109.47433 * 55.14696 * 21 19 2 51 51 H 0.97007 * 119.99930 * 359.97438 * 22 21 19 52 52 H 0.97007 * 119.99606 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 1.4941 -2.1569 1.2643 6 7 1.8620 -2.8089 0.0000 7 6 2.5148 -3.9880 0.0001 8 8 2.9098 -4.4645 -1.0470 9 6 2.7498 -4.6990 1.2670 10 6 2.0623 -4.5271 2.4558 11 6 2.6490 -5.4205 3.3550 12 7 3.5998 -6.0599 2.7227 13 7 3.6897 -5.6611 1.5050 14 6 4.6497 -6.1656 0.5201 15 6 4.4195 -7.6359 0.1326 16 6 5.3453 -8.0097 1.3024 17 6 5.9839 -6.6187 1.1364 18 6 1.4993 -2.1541 -1.2643 19 6 2.0399 -0.7208 -1.2500 20 1 3.1295 -0.7431 -1.2382 21 6 1.5578 0.0192 -2.4994 22 7 2.1407 -0.6028 -3.6908 23 6 1.8496 -0.1074 -4.9338 24 1 1.1906 0.7421 -5.0358 25 6 2.4024 -0.6965 -6.0627 26 7 3.2060 -1.7314 -5.9383 27 14 2.0059 -0.0203 -7.7582 28 1 1.0849 1.1372 -7.6266 29 1 3.2599 0.4174 -8.4223 30 1 1.3571 -1.0782 -8.5738 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 3.1293 -0.7431 1.2384 35 1 1.6960 -0.1932 2.1398 36 1 0.4088 -2.1374 1.3630 37 1 1.9292 -2.7064 2.0990 38 1 1.2452 -3.8472 2.6473 39 1 2.3660 -5.5612 4.3877 40 1 4.7661 -5.5015 -0.3362 41 1 3.3898 -7.9670 0.2678 42 1 4.8237 -7.8982 -0.8450 43 1 4.8215 -8.1394 2.2494 44 1 6.0237 -8.8324 1.0766 45 1 6.8169 -6.6033 0.4337 46 1 6.2177 -6.1276 2.0809 47 1 1.9379 -2.7018 -2.0983 48 1 0.4143 -2.1345 -1.3674 49 1 0.4705 -0.0345 -2.5567 50 1 1.8677 1.0629 -2.4458 51 1 2.7330 -1.3656 -3.5992 52 1 3.5926 -2.1428 -6.7272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132830666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:42 Heat of formation + Delta-G solvation = 72.981032 kcal Electronic energy + Delta-G solvation = -31799.124958 eV Core-core repulsion = 27801.161535 eV Total energy + Delta-G solvation = -3997.963423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.75462 -41.35409 -39.45761 -39.22861 -36.70784 -35.09114 -33.52066 -32.62457 -32.36426 -31.09684 -28.76745 -27.40161 -26.79661 -26.63973 -26.05436 -24.98984 -23.54342 -22.79576 -22.49116 -21.86437 -20.10377 -19.27502 -18.94272 -18.18650 -17.61926 -17.20898 -16.91227 -16.72692 -16.45291 -16.12431 -16.05397 -15.70743 -15.58623 -15.20832 -15.11661 -14.60603 -14.56254 -14.53673 -14.13616 -13.97291 -13.77902 -13.49753 -13.36293 -13.06104 -12.89406 -12.83978 -12.62743 -12.42837 -12.13588 -12.06590 -11.96668 -11.91349 -11.74735 -11.69812 -11.67808 -11.55625 -11.27576 -11.19981 -11.00090 -10.94034 -10.25812 -9.92944 -9.62362 -9.01318 -7.95495 -5.25782 0.19627 1.21184 1.44433 1.46283 1.56373 1.64484 1.94215 2.05137 2.54391 3.20124 3.29289 3.37675 3.44380 3.68557 3.73716 3.78584 3.81656 3.84939 3.99207 4.06684 4.10859 4.18466 4.28428 4.37556 4.45169 4.54868 4.56442 4.60791 4.62562 4.69404 4.71445 4.77403 4.78831 4.82648 4.84321 4.91588 4.92006 4.99183 5.01338 5.10635 5.18049 5.24253 5.25992 5.31119 5.41074 5.45936 5.48650 5.55930 5.62278 5.81197 6.24953 6.26166 6.92819 7.10624 7.30625 8.07190 8.29198 9.28156 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.003142 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.312601 B = 8909.949320 C =11049.391224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.121 4.121 5 C 0.068 3.932 6 N -0.586 5.586 7 C 0.573 3.427 8 O -0.583 6.583 9 C -0.054 4.054 10 C -0.184 4.184 11 C -0.001 4.001 12 N -0.288 5.288 13 N -0.249 5.249 14 C 0.096 3.904 15 C -0.139 4.139 16 C -0.122 4.122 17 C -0.127 4.127 18 C 0.132 3.868 19 C -0.089 4.089 20 H 0.046 0.954 21 C 0.160 3.840 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.080 0.920 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.976 3.024 28 H -0.262 1.262 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.206 0.794 39 H 0.226 0.774 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.023 0.977 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -5.412 26.566 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.159 4.159 5 C -0.052 4.052 6 N -0.317 5.317 7 C 0.361 3.639 8 O -0.464 6.464 9 C -0.182 4.182 10 C -0.213 4.213 11 C -0.176 4.176 12 N -0.120 5.120 13 N -0.037 5.037 14 C -0.006 4.006 15 C -0.178 4.178 16 C -0.159 4.159 17 C -0.164 4.164 18 C 0.009 3.991 19 C -0.109 4.109 20 H 0.064 0.936 21 C 0.033 3.967 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.804 3.196 28 H -0.186 1.186 29 H -0.221 1.221 30 H -0.222 1.222 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.223 0.777 39 H 0.242 0.758 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.132 0.868 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.051 0.949 50 H 0.041 0.959 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.639 -6.374 25.947 26.769 hybrid contribution -0.251 0.564 -2.022 2.114 sum -1.890 -5.810 23.925 24.693 Atomic orbital electron populations 1.21965 0.93665 1.02274 1.02696 1.21081 0.97182 0.99232 0.92417 0.90282 1.22018 1.00331 0.94886 0.98698 1.23152 1.02488 0.94220 0.85304 1.47856 1.55719 1.19203 1.08941 1.17489 0.78075 0.81417 0.86900 1.90839 1.52683 1.68170 1.34680 1.21411 0.99736 1.00034 0.97051 1.22984 1.04155 1.04213 0.89912 1.24341 0.94827 0.96136 1.02325 1.73126 1.22805 1.23852 0.92233 1.45452 1.24381 1.25863 1.07955 1.22769 0.90141 0.97984 0.89658 1.23278 1.00941 0.92350 1.01191 1.22888 0.97962 0.96973 0.98123 1.23223 0.94237 0.97153 1.01829 1.21466 0.99874 0.92744 0.84993 1.21538 0.99161 0.94149 0.96041 0.93581 1.20872 0.96127 0.94759 0.84907 1.42704 1.57040 1.37341 1.02052 1.19701 1.22330 1.10511 0.84949 0.90244 1.25649 1.00611 0.99003 1.01910 1.69881 1.37375 1.25997 1.29020 0.85037 0.77170 0.77616 0.79729 1.18572 1.22093 1.22165 0.92379 0.89853 0.93339 0.92985 0.86643 0.88018 0.85456 0.77712 0.75752 0.88219 0.92394 0.87268 0.89475 0.88936 0.86751 0.90536 0.93101 0.90111 0.94883 0.95861 0.79874 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.11 71.98 0.58 -2.15 16 2 C -0.08 -1.75 2.71 -10.77 -0.03 -1.78 16 3 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.12 -2.00 5.64 30.82 0.17 -1.83 16 5 C 0.07 1.15 4.81 86.51 0.42 1.57 16 6 N -0.59 -16.62 2.97 -822.25 -2.44 -19.06 16 7 C 0.57 19.32 7.58 86.59 0.66 19.98 16 8 O -0.58 -25.52 14.43 -4.12 -0.06 -25.58 16 9 C -0.05 -1.47 6.62 40.79 0.27 -1.20 16 10 C -0.18 -3.23 8.72 22.66 0.20 -3.04 16 11 C 0.00 -0.01 12.03 85.19 1.02 1.01 16 12 N -0.29 -6.57 10.13 -57.14 -0.58 -7.15 16 13 N -0.25 -6.67 3.48 -311.81 -1.09 -7.75 16 14 C 0.10 2.56 4.35 45.52 0.20 2.76 16 15 C -0.14 -3.19 7.87 31.12 0.25 -2.95 16 16 C -0.12 -2.22 7.70 31.18 0.24 -1.98 16 17 C -0.13 -2.50 7.56 31.18 0.24 -2.27 16 18 C 0.13 4.57 5.06 86.36 0.44 5.00 16 19 C -0.09 -2.94 2.15 -10.72 -0.02 -2.96 16 20 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 21 C 0.16 6.45 5.19 86.38 0.45 6.90 16 22 N -0.75 -40.08 5.38 -343.44 -1.85 -41.92 16 23 C -0.24 -14.08 9.99 84.04 0.84 -13.24 16 24 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 25 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 26 N -0.97 -63.08 13.06 21.65 0.28 -62.80 16 27 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 28 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 30 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 31 H 0.06 1.06 4.96 -2.39 -0.01 1.05 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.05 6.58 -2.39 -0.02 1.03 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.24 6.68 -2.39 -0.02 1.22 16 37 H 0.13 1.71 3.57 -2.39 -0.01 1.71 16 38 H 0.21 2.03 5.75 -2.91 -0.02 2.01 16 39 H 0.23 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.10 3.25 6.47 -2.39 -0.02 3.23 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 1.71 7.22 -2.39 -0.02 1.69 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 47 H 0.05 2.33 6.20 -2.39 -0.01 2.31 16 48 H 0.08 2.60 6.69 -2.38 -0.02 2.59 16 49 H 0.03 1.29 6.73 -2.38 -0.02 1.27 16 50 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.37 21.81 6.89 -92.70 -0.64 21.17 16 52 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -80.47 393.35 2.99 -77.48 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.30 Total: 37.44 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.38 Total: -0.49 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -5.67 Total: -138.68 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -80.47 2.99 -77.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132830666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.464 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds