Wall clock time and date at job start Wed Apr 1 2020 03:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46418 * 2 1 4 4 C 1.53040 * 109.45024 * 119.96087 * 2 1 3 5 5 C 1.53631 * 109.24024 * 58.52561 * 4 2 1 6 6 N 1.46921 * 108.54149 * 54.85433 * 5 4 2 7 7 C 1.34784 * 120.62857 * 126.37113 * 6 5 4 8 8 O 1.21630 * 119.99864 * 180.50310 * 7 6 5 9 9 C 1.47159 * 119.99915 * 0.50317 * 7 6 5 10 10 C 1.38405 * 126.88448 * 25.65297 * 9 7 6 11 11 C 1.39672 * 105.35850 * 179.91597 * 10 9 7 12 12 C 1.50702 * 126.06979 * 180.14739 * 11 10 9 13 13 C 1.53002 * 117.49586 * 343.89257 * 12 11 10 14 14 C 1.53005 * 117.49655 * 275.27147 * 12 11 10 15 15 N 1.30864 * 107.86132 * 0.35489 * 11 10 9 16 16 N 1.28438 * 110.92949 * 359.77454 * 15 11 10 17 17 C 1.46498 * 125.19134 * 180.02562 * 16 15 11 18 18 C 1.46924 * 118.74229 * 306.09422 * 6 5 4 19 19 C 1.53039 * 109.46341 * 240.02399 * 2 1 3 20 20 H 1.09001 * 109.50231 * 181.40892 * 19 2 1 21 21 C 1.53001 * 109.52454 * 61.32514 * 19 2 1 22 22 N 1.46501 * 109.47330 * 175.14935 * 21 19 2 23 23 C 1.36941 * 119.99751 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00222 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99335 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00599 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99575 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47121 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47006 * 119.99637 * 27 25 23 30 30 H 1.48497 * 109.47193 * 239.99629 * 27 25 23 31 31 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47238 * 299.98157 * 1 2 3 33 33 H 1.09002 * 109.47042 * 59.97637 * 1 2 3 34 34 H 1.08997 * 109.49882 * 178.59654 * 4 2 1 35 35 H 1.08995 * 109.50007 * 298.67002 * 4 2 1 36 36 H 1.08997 * 109.73761 * 295.11928 * 5 4 2 37 37 H 1.08995 * 109.66573 * 174.54980 * 5 4 2 38 38 H 1.07998 * 127.32039 * 359.97438 * 10 9 7 39 39 H 1.08997 * 115.55066 * 129.59739 * 12 11 10 40 40 H 1.08995 * 117.50100 * 359.97438 * 13 12 11 41 41 H 1.08998 * 117.50009 * 145.02181 * 13 12 11 42 42 H 1.09004 * 117.49410 * 214.97680 * 14 12 11 43 43 H 1.08990 * 117.50267 * 359.97438 * 14 12 11 44 44 H 1.09005 * 109.47101 * 264.37705 * 17 16 15 45 45 H 1.08997 * 109.47162 * 24.38425 * 17 16 15 46 46 H 1.09003 * 109.47057 * 144.38151 * 17 16 15 47 47 H 1.08998 * 109.58758 * 173.64383 * 18 6 5 48 48 H 1.08994 * 109.59018 * 294.07609 * 18 6 5 49 49 H 1.09000 * 109.47418 * 295.15090 * 21 19 2 50 50 H 1.09002 * 109.47306 * 55.14519 * 21 19 2 51 51 H 0.96998 * 119.99724 * 0.02562 * 22 21 19 52 52 H 0.96996 * 120.00302 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4940 -2.1568 1.2645 6 7 1.8619 -2.8089 0.0003 7 6 2.5148 -3.9880 0.0005 8 8 2.8219 -4.5133 -1.0527 9 6 2.8560 -4.6400 1.2749 10 6 2.2049 -4.4872 2.4867 11 6 2.8956 -5.3054 3.3835 12 6 2.5727 -5.4921 4.8436 13 6 1.6474 -4.4651 5.4995 14 6 3.1415 -4.4694 5.8293 15 7 3.8756 -5.8775 2.7319 16 7 3.8826 -5.5125 1.5005 17 6 4.8443 -5.9635 0.4916 18 6 1.4992 -2.1543 -1.2640 19 6 2.0399 -0.7209 -1.2499 20 1 3.1296 -0.7432 -1.2380 21 6 1.5579 0.0189 -2.4994 22 7 2.1409 -0.6032 -3.6907 23 6 1.8506 -0.1072 -4.9337 24 1 1.1916 0.7422 -5.0358 25 6 2.4027 -0.6971 -6.0625 26 7 3.2055 -1.7326 -5.9381 27 14 2.0062 -0.0210 -7.7582 28 1 1.0861 1.1371 -7.6266 29 1 3.2604 0.4156 -8.4227 30 1 1.3564 -1.0787 -8.5732 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5135 0.8901 33 1 -0.3633 0.5142 -0.8898 34 1 3.1292 -0.7430 1.2385 35 1 1.6959 -0.1930 2.1398 36 1 0.4087 -2.1373 1.3632 37 1 1.9292 -2.7062 2.0992 38 1 1.3448 -3.8679 2.6943 39 1 2.4958 -6.5262 5.1796 40 1 1.2726 -3.6542 4.8750 41 1 0.9615 -4.8234 6.2670 42 1 3.4384 -4.8307 6.8140 43 1 3.7495 -3.6618 5.4218 44 1 5.6513 -5.2355 0.4078 45 1 5.2551 -6.9289 0.7871 46 1 4.3421 -6.0616 -0.4709 47 1 1.9379 -2.7020 -2.0981 48 1 0.4144 -2.1346 -1.3673 49 1 0.4707 -0.0347 -2.5567 50 1 1.8677 1.0626 -2.4459 51 1 2.7326 -1.3664 -3.5990 52 1 3.5915 -2.1445 -6.7269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132854406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:53 Heat of formation + Delta-G solvation = 95.526989 kcal Electronic energy + Delta-G solvation = -31534.917730 eV Core-core repulsion = 27537.931973 eV Total energy + Delta-G solvation = -3996.985757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.81214 -40.20083 -38.08142 -37.44042 -35.12165 -33.78336 -32.97326 -32.02003 -31.14943 -29.66951 -27.77597 -27.35650 -25.75992 -25.13749 -23.58365 -23.13578 -22.80373 -22.18623 -21.18072 -20.83129 -19.17308 -18.40642 -17.26560 -16.95456 -16.74793 -16.44651 -15.85977 -15.53182 -15.15065 -14.96792 -14.80830 -14.64307 -14.33049 -14.04829 -13.68248 -13.54958 -13.20636 -13.03993 -12.94641 -12.69556 -12.66316 -12.46237 -12.20109 -11.86718 -11.78658 -11.62055 -11.29904 -11.18983 -11.06780 -10.94980 -10.88427 -10.80647 -10.64581 -10.44851 -10.26651 -10.19557 -10.01471 -9.84880 -9.60598 -9.18324 -8.94266 -8.85073 -8.50950 -6.88479 -5.71979 -3.01537 1.20062 2.18167 2.27933 3.00721 3.11931 3.45503 3.50615 3.53266 3.53521 4.06922 4.28619 4.56203 4.59653 4.64855 4.72459 4.74706 4.84365 4.89526 4.98634 5.05162 5.07970 5.16782 5.22846 5.25091 5.32545 5.41464 5.43350 5.50207 5.56357 5.57655 5.61026 5.66072 5.69389 5.79365 5.80776 5.85701 5.88340 5.94399 6.02004 6.12593 6.24171 6.31523 6.33632 6.34955 6.53846 6.55413 6.60717 6.76478 6.88396 7.36233 7.73404 7.89775 8.11534 8.45831 9.56995 10.14837 10.48910 11.50431 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002720 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.068256 B =10291.869048 C =11737.523216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.071 3.929 6 N -0.590 5.590 7 C 0.583 3.417 8 O -0.528 6.528 9 C -0.021 4.021 10 C -0.199 4.199 11 C 0.053 3.947 12 C -0.072 4.072 13 C -0.167 4.167 14 C -0.167 4.167 15 N -0.274 5.274 16 N -0.256 5.256 17 C 0.081 3.919 18 C 0.121 3.879 19 C -0.101 4.101 20 H 0.073 0.927 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.171 0.829 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.024 0.976 50 H 0.021 0.979 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -4.319 25.932 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.051 4.051 6 N -0.322 5.322 7 C 0.369 3.631 8 O -0.405 6.405 9 C -0.150 4.150 10 C -0.228 4.228 11 C -0.103 4.103 12 C -0.092 4.092 13 C -0.204 4.204 14 C -0.205 4.205 15 N -0.107 5.107 16 N -0.042 5.042 17 C -0.059 4.059 18 C 0.000 4.000 19 C -0.121 4.121 20 H 0.092 0.908 21 C 0.033 3.967 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.188 0.812 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.132 0.868 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.581 -5.297 25.186 25.786 hybrid contribution -0.552 0.674 -1.149 1.442 sum -2.133 -4.623 24.038 24.571 Atomic orbital electron populations 1.21990 0.95177 1.01979 1.01854 1.21087 0.96056 0.99418 0.93924 0.90806 1.22007 1.01082 0.94985 0.98454 1.22779 1.00691 0.94417 0.87191 1.47830 1.56242 1.19728 1.08383 1.16968 0.78564 0.81114 0.86432 1.90861 1.53944 1.63596 1.32063 1.21469 0.95847 1.01090 0.96572 1.22277 1.04373 1.05300 0.90829 1.20987 0.94894 0.99064 0.95375 1.20009 1.05577 0.96904 0.86686 1.23004 0.93281 1.01197 1.02942 1.22998 0.96461 1.01455 0.99597 1.73079 1.22768 1.23211 0.91620 1.45569 1.21669 1.30185 1.06821 1.22420 0.91546 1.01787 0.90168 1.21833 1.00155 0.93001 0.84976 1.21688 1.00882 0.94217 0.95309 0.90842 1.20681 0.96026 0.94736 0.85291 1.42431 1.57065 1.37482 1.00829 1.19241 1.23303 1.10851 0.83745 0.91179 1.24753 1.00084 0.98306 0.97821 1.69678 1.35621 1.24108 1.28400 0.86143 0.77385 0.77963 0.84847 1.20596 1.21924 1.21887 0.92446 0.93082 0.91759 0.91616 0.90783 0.90753 0.87283 0.81173 0.86445 0.88337 0.88074 0.88316 0.88625 0.89671 0.88516 0.86820 0.87724 0.90962 0.95867 0.96107 0.78150 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 2 C -0.09 -1.02 2.71 -90.58 -0.25 -1.27 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.26 5.64 -26.38 -0.15 -1.41 16 5 C 0.07 0.72 5.02 -3.48 -0.02 0.70 16 6 N -0.59 -8.25 2.97 -173.87 -0.52 -8.77 16 7 C 0.58 9.23 7.57 -12.64 -0.10 9.13 16 8 O -0.53 -10.26 14.51 5.25 0.08 -10.19 16 9 C -0.02 -0.28 6.59 -82.06 -0.54 -0.82 16 10 C -0.20 -2.21 7.99 -38.98 -0.31 -2.52 16 11 C 0.05 0.60 6.85 -82.47 -0.57 0.03 16 12 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 13 C -0.17 -1.00 10.02 -26.73 -0.27 -1.27 16 14 C -0.17 -1.13 10.23 -26.73 -0.27 -1.40 16 15 N -0.27 -3.60 11.90 33.64 0.40 -3.20 16 16 N -0.26 -3.42 3.75 -63.88 -0.24 -3.65 16 17 C 0.08 0.89 10.97 59.85 0.66 1.55 16 18 C 0.12 1.99 5.05 -3.71 -0.02 1.97 16 19 C -0.10 -1.61 2.15 -90.50 -0.19 -1.81 16 20 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 21 C 0.16 3.15 5.19 -4.04 -0.02 3.13 16 22 N -0.73 -18.67 5.38 -59.91 -0.32 -18.99 16 23 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 27 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 31 H 0.06 0.62 4.97 -51.93 -0.26 0.36 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 37 H 0.11 0.98 3.35 -51.93 -0.17 0.81 16 38 H 0.17 1.43 5.30 -52.49 -0.28 1.15 16 39 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.55 7.21 -51.93 -0.37 0.17 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.11 1.42 6.44 -51.93 -0.33 1.09 16 47 H 0.10 2.15 6.20 -51.93 -0.32 1.83 16 48 H 0.07 1.14 6.69 -51.93 -0.35 0.79 16 49 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.38 10.49 6.89 -40.82 -0.28 10.21 16 52 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -34.30 399.23 -9.48 -43.78 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.03 Total: 9.25 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.57 Total: -3.91 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.05 Total: -62.65 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.30 -9.48 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132854406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.309 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds