Wall clock time and date at job start Wed Apr 1 2020 03:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46418 * 2 1 4 4 C 1.53040 * 109.45024 * 119.96087 * 2 1 3 5 5 C 1.53631 * 109.24024 * 58.52561 * 4 2 1 6 6 N 1.46921 * 108.54149 * 54.85433 * 5 4 2 7 7 C 1.34784 * 120.62857 * 126.37113 * 6 5 4 8 8 O 1.21630 * 119.99864 * 180.50310 * 7 6 5 9 9 C 1.47159 * 119.99915 * 0.50317 * 7 6 5 10 10 C 1.38405 * 126.88448 * 25.65297 * 9 7 6 11 11 C 1.39672 * 105.35850 * 179.91597 * 10 9 7 12 12 C 1.50702 * 126.06979 * 180.14739 * 11 10 9 13 13 C 1.53002 * 117.49586 * 343.89257 * 12 11 10 14 14 C 1.53005 * 117.49655 * 275.27147 * 12 11 10 15 15 N 1.30864 * 107.86132 * 0.35489 * 11 10 9 16 16 N 1.28438 * 110.92949 * 359.77454 * 15 11 10 17 17 C 1.46498 * 125.19134 * 180.02562 * 16 15 11 18 18 C 1.46924 * 118.74229 * 306.09422 * 6 5 4 19 19 C 1.53039 * 109.46341 * 240.02399 * 2 1 3 20 20 H 1.09001 * 109.50231 * 181.40892 * 19 2 1 21 21 C 1.53001 * 109.52454 * 61.32514 * 19 2 1 22 22 N 1.46501 * 109.47330 * 175.14935 * 21 19 2 23 23 C 1.36941 * 119.99751 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00222 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99335 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00599 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99575 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47121 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47006 * 119.99637 * 27 25 23 30 30 H 1.48497 * 109.47193 * 239.99629 * 27 25 23 31 31 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47238 * 299.98157 * 1 2 3 33 33 H 1.09002 * 109.47042 * 59.97637 * 1 2 3 34 34 H 1.08997 * 109.49882 * 178.59654 * 4 2 1 35 35 H 1.08995 * 109.50007 * 298.67002 * 4 2 1 36 36 H 1.08997 * 109.73761 * 295.11928 * 5 4 2 37 37 H 1.08995 * 109.66573 * 174.54980 * 5 4 2 38 38 H 1.07998 * 127.32039 * 359.97438 * 10 9 7 39 39 H 1.08997 * 115.55066 * 129.59739 * 12 11 10 40 40 H 1.08995 * 117.50100 * 359.97438 * 13 12 11 41 41 H 1.08998 * 117.50009 * 145.02181 * 13 12 11 42 42 H 1.09004 * 117.49410 * 214.97680 * 14 12 11 43 43 H 1.08990 * 117.50267 * 359.97438 * 14 12 11 44 44 H 1.09005 * 109.47101 * 264.37705 * 17 16 15 45 45 H 1.08997 * 109.47162 * 24.38425 * 17 16 15 46 46 H 1.09003 * 109.47057 * 144.38151 * 17 16 15 47 47 H 1.08998 * 109.58758 * 173.64383 * 18 6 5 48 48 H 1.08994 * 109.59018 * 294.07609 * 18 6 5 49 49 H 1.09000 * 109.47418 * 295.15090 * 21 19 2 50 50 H 1.09002 * 109.47306 * 55.14519 * 21 19 2 51 51 H 0.96998 * 119.99724 * 0.02562 * 22 21 19 52 52 H 0.96996 * 120.00302 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4940 -2.1568 1.2645 6 7 1.8619 -2.8089 0.0003 7 6 2.5148 -3.9880 0.0005 8 8 2.8219 -4.5133 -1.0527 9 6 2.8560 -4.6400 1.2749 10 6 2.2049 -4.4872 2.4867 11 6 2.8956 -5.3054 3.3835 12 6 2.5727 -5.4921 4.8436 13 6 1.6474 -4.4651 5.4995 14 6 3.1415 -4.4694 5.8293 15 7 3.8756 -5.8775 2.7319 16 7 3.8826 -5.5125 1.5005 17 6 4.8443 -5.9635 0.4916 18 6 1.4992 -2.1543 -1.2640 19 6 2.0399 -0.7209 -1.2499 20 1 3.1296 -0.7432 -1.2380 21 6 1.5579 0.0189 -2.4994 22 7 2.1409 -0.6032 -3.6907 23 6 1.8506 -0.1072 -4.9337 24 1 1.1916 0.7422 -5.0358 25 6 2.4027 -0.6971 -6.0625 26 7 3.2055 -1.7326 -5.9381 27 14 2.0062 -0.0210 -7.7582 28 1 1.0861 1.1371 -7.6266 29 1 3.2604 0.4156 -8.4227 30 1 1.3564 -1.0787 -8.5732 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5135 0.8901 33 1 -0.3633 0.5142 -0.8898 34 1 3.1292 -0.7430 1.2385 35 1 1.6959 -0.1930 2.1398 36 1 0.4087 -2.1373 1.3632 37 1 1.9292 -2.7062 2.0992 38 1 1.3448 -3.8679 2.6943 39 1 2.4958 -6.5262 5.1796 40 1 1.2726 -3.6542 4.8750 41 1 0.9615 -4.8234 6.2670 42 1 3.4384 -4.8307 6.8140 43 1 3.7495 -3.6618 5.4218 44 1 5.6513 -5.2355 0.4078 45 1 5.2551 -6.9289 0.7871 46 1 4.3421 -6.0616 -0.4709 47 1 1.9379 -2.7020 -2.0981 48 1 0.4144 -2.1346 -1.3673 49 1 0.4707 -0.0347 -2.5567 50 1 1.8677 1.0626 -2.4459 51 1 2.7326 -1.3664 -3.5990 52 1 3.5915 -2.1445 -6.7269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132854406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:52 Heat of formation + Delta-G solvation = 73.710459 kcal Electronic energy + Delta-G solvation = -31535.863766 eV Core-core repulsion = 27537.931973 eV Total energy + Delta-G solvation = -3997.931793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.75588 -41.35658 -39.29056 -38.04709 -36.73110 -35.18473 -33.90834 -33.52454 -32.45364 -31.14506 -28.82141 -28.24000 -27.33285 -26.22117 -25.04181 -24.22199 -23.56174 -22.94856 -22.57929 -21.76480 -20.22492 -19.53273 -18.96028 -18.21917 -17.80986 -17.37159 -16.95035 -16.74933 -16.43264 -16.19609 -15.87124 -15.74566 -15.28597 -15.20635 -15.13427 -14.92337 -14.54654 -14.34264 -14.07517 -13.84295 -13.79292 -13.56119 -13.06313 -12.92362 -12.89365 -12.81127 -12.62312 -12.42635 -12.22327 -12.14256 -12.07489 -11.92742 -11.91135 -11.71422 -11.49238 -11.37074 -11.24885 -11.17100 -11.02586 -10.93981 -10.19380 -9.79826 -9.64775 -9.00785 -7.95338 -5.25393 0.16107 1.20599 1.42825 1.44747 1.46447 1.56524 1.92425 1.99125 2.54596 2.97506 3.19684 3.37947 3.42405 3.67636 3.80374 3.84643 3.88248 4.04255 4.06107 4.14464 4.16996 4.19402 4.19999 4.28853 4.35048 4.39353 4.44593 4.53289 4.55252 4.57605 4.70641 4.74321 4.77270 4.82735 4.91802 4.92407 5.00429 5.10976 5.11687 5.17743 5.25827 5.28843 5.30883 5.38113 5.39840 5.42255 5.46147 5.49056 5.62392 5.63395 6.22435 6.25669 6.88331 7.01614 7.31112 8.07793 8.29525 9.28354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002720 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.068256 B =10291.869048 C =11737.523216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.121 4.121 5 C 0.066 3.934 6 N -0.584 5.584 7 C 0.577 3.423 8 O -0.580 6.580 9 C -0.045 4.045 10 C -0.181 4.181 11 C 0.053 3.947 12 C -0.095 4.095 13 C -0.148 4.148 14 C -0.165 4.165 15 N -0.292 5.292 16 N -0.269 5.269 17 C 0.080 3.920 18 C 0.131 3.869 19 C -0.089 4.089 20 H 0.047 0.953 21 C 0.160 3.840 22 N -0.749 5.749 23 C -0.242 4.242 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.975 3.025 28 H -0.262 1.262 29 H -0.294 1.294 30 H -0.295 1.295 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.203 0.797 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.024 0.976 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -2.583 29.416 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.159 4.159 5 C -0.054 4.054 6 N -0.315 5.315 7 C 0.364 3.636 8 O -0.460 6.460 9 C -0.173 4.173 10 C -0.209 4.209 11 C -0.103 4.103 12 C -0.115 4.115 13 C -0.185 4.185 14 C -0.203 4.203 15 N -0.125 5.125 16 N -0.055 5.055 17 C -0.060 4.060 18 C 0.009 3.991 19 C -0.109 4.109 20 H 0.066 0.934 21 C 0.033 3.967 22 N -0.391 5.391 23 C -0.374 4.374 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.804 3.196 28 H -0.186 1.186 29 H -0.221 1.221 30 H -0.222 1.222 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.219 0.781 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.136 0.864 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.051 0.949 50 H 0.042 0.958 51 H 0.202 0.798 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.776 -3.500 28.733 29.191 hybrid contribution 0.102 0.154 -2.121 2.129 sum -3.674 -3.346 26.612 27.072 Atomic orbital electron populations 1.21967 0.93678 1.02267 1.02732 1.21080 0.97180 0.99272 0.92374 0.90190 1.22008 1.00353 0.94719 0.98776 1.23150 1.02503 0.94382 0.85343 1.47876 1.55423 1.19163 1.09013 1.17373 0.78094 0.81389 0.86704 1.90835 1.56046 1.65106 1.34062 1.21343 0.97324 1.02340 0.96341 1.22633 1.04298 1.04668 0.89266 1.21566 0.93900 0.98094 0.96752 1.20148 1.08302 0.97957 0.85090 1.23168 0.92939 0.99916 1.02493 1.23057 0.97348 1.00383 0.99538 1.73082 1.23890 1.23923 0.91616 1.45737 1.22096 1.30516 1.07195 1.22434 0.91237 1.03110 0.89209 1.21490 1.00037 0.92720 0.84864 1.21546 0.99258 0.94076 0.96024 0.93405 1.20871 0.96148 0.94781 0.84869 1.42699 1.57091 1.37284 1.02036 1.19698 1.22282 1.10443 0.84940 0.90226 1.25643 1.00682 0.99021 1.01899 1.69866 1.37451 1.25953 1.29028 0.85044 0.77155 0.77611 0.79781 1.18571 1.22132 1.22210 0.92411 0.89856 0.93282 0.92915 0.86673 0.87995 0.85812 0.78071 0.86115 0.87331 0.86196 0.86978 0.89408 0.89163 0.86385 0.88933 0.92895 0.90074 0.94872 0.95808 0.79845 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.11 71.98 0.58 -2.10 16 2 C -0.08 -1.71 2.71 -10.77 -0.03 -1.74 16 3 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -1.95 5.64 30.82 0.17 -1.78 16 5 C 0.07 1.12 5.02 86.51 0.43 1.56 16 6 N -0.58 -16.32 2.97 -822.25 -2.44 -18.75 16 7 C 0.58 19.07 7.57 86.58 0.66 19.73 16 8 O -0.58 -24.64 14.51 -4.13 -0.06 -24.70 16 9 C -0.04 -1.23 6.59 40.78 0.27 -0.96 16 10 C -0.18 -3.60 7.99 22.66 0.18 -3.42 16 11 C 0.05 1.11 6.85 43.05 0.30 1.40 16 12 C -0.10 -1.33 6.33 -11.54 -0.07 -1.40 16 13 C -0.15 -1.16 10.02 30.60 0.31 -0.85 16 14 C -0.17 -1.72 10.23 30.60 0.31 -1.41 16 15 N -0.29 -7.54 11.90 -47.49 -0.57 -8.11 16 16 N -0.27 -7.33 3.75 -356.02 -1.33 -8.67 16 17 C 0.08 1.91 10.97 127.77 1.40 3.31 16 18 C 0.13 4.46 5.05 86.36 0.44 4.90 16 19 C -0.09 -2.88 2.15 -10.71 -0.02 -2.90 16 20 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 21 C 0.16 6.35 5.19 86.38 0.45 6.79 16 22 N -0.75 -39.59 5.38 -343.45 -1.85 -41.43 16 23 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 24 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 25 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 26 N -0.97 -62.75 13.06 21.65 0.28 -62.46 16 27 Si 0.98 47.62 29.55 68.60 2.03 49.64 16 28 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 29 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 31 H 0.06 1.04 4.97 -2.39 -0.01 1.03 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.04 6.58 -2.39 -0.02 1.03 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.26 6.69 -2.39 -0.02 1.24 16 37 H 0.12 1.77 3.35 -2.39 -0.01 1.76 16 38 H 0.20 2.52 5.30 -2.91 -0.02 2.50 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 0.64 7.21 -2.39 -0.02 0.62 16 41 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.09 2.62 6.44 -2.39 -0.02 2.60 16 47 H 0.05 2.38 6.20 -2.39 -0.01 2.36 16 48 H 0.08 2.57 6.69 -2.39 -0.02 2.56 16 49 H 0.03 1.28 6.73 -2.39 -0.02 1.26 16 50 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.37 21.53 6.89 -92.71 -0.64 20.89 16 52 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -79.82 399.23 3.05 -76.77 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.31 Total: 33.98 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.68 Total: 3.74 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -5.90 Total: -139.43 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -79.82 3.05 -76.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132854406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.477 kcal (2) G-P(sol) polarization free energy of solvation -79.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds