Wall clock time and date at job start Wed Apr 1 2020 03:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45734 * 2 1 4 4 C 1.53039 * 109.44521 * 240.03738 * 2 1 3 5 5 C 1.52756 * 109.38772 * 301.22370 * 4 2 1 6 6 N 1.46931 * 109.00478 * 305.59326 * 5 4 2 7 7 C 1.34780 * 120.62851 * 233.57642 * 6 5 4 8 8 O 1.21627 * 120.00039 * 179.44604 * 7 6 5 9 9 C 1.47168 * 119.99790 * 359.17930 * 7 6 5 10 10 C 1.38405 * 126.88461 * 334.87233 * 9 7 6 11 11 C 1.39671 * 105.35985 * 179.97438 * 10 9 7 12 12 C 1.50696 * 126.06990 * 179.97438 * 11 10 9 13 13 C 1.53005 * 117.49874 * 343.75436 * 12 11 10 14 14 C 1.52998 * 117.50377 * 275.09203 * 12 11 10 15 15 N 1.30865 * 107.86139 * 0.02562 * 11 10 9 16 16 N 1.28448 * 110.92666 * 359.74841 * 15 11 10 17 17 C 1.46494 * 125.18885 * 180.26102 * 16 15 11 18 18 C 1.46922 * 118.73883 * 53.30637 * 6 5 4 19 19 C 1.53032 * 109.46245 * 119.97596 * 2 1 3 20 20 H 1.09002 * 109.49663 * 178.59424 * 19 2 1 21 21 C 1.53001 * 109.52492 * 298.67335 * 19 2 1 22 22 N 1.46502 * 109.47152 * 184.85565 * 21 19 2 23 23 C 1.36938 * 119.99548 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00750 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99443 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99942 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00423 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47136 * 89.99706 * 27 25 23 29 29 H 1.48495 * 109.47203 * 210.00241 * 27 25 23 30 30 H 1.48503 * 109.46976 * 330.00167 * 27 25 23 31 31 H 1.08996 * 109.46664 * 300.02435 * 1 2 3 32 32 H 1.08999 * 109.47042 * 60.02372 * 1 2 3 33 33 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.50248 * 61.30247 * 4 2 1 35 35 H 1.09002 * 109.49518 * 181.39800 * 4 2 1 36 36 H 1.08994 * 109.51554 * 185.70750 * 5 4 2 37 37 H 1.09001 * 109.42971 * 65.41999 * 5 4 2 38 38 H 1.08003 * 127.31928 * 359.97438 * 10 9 7 39 39 H 1.09003 * 115.54810 * 129.41592 * 12 11 10 40 40 H 1.08997 * 117.49827 * 359.97438 * 13 12 11 41 41 H 1.09000 * 117.49797 * 145.01593 * 13 12 11 42 42 H 1.09000 * 117.50333 * 214.97834 * 14 12 11 43 43 H 1.09006 * 117.49552 * 359.97438 * 14 12 11 44 44 H 1.08999 * 109.47647 * 264.66546 * 17 16 15 45 45 H 1.08998 * 109.47412 * 24.67328 * 17 16 15 46 46 H 1.09002 * 109.46989 * 144.66506 * 17 16 15 47 47 H 1.08996 * 109.58605 * 66.43280 * 18 6 5 48 48 H 1.09006 * 109.58554 * 186.85213 * 18 6 5 49 49 H 1.08998 * 109.47212 * 304.85309 * 21 19 2 50 50 H 1.09002 * 109.47207 * 64.85200 * 21 19 2 51 51 H 0.96997 * 119.99887 * 359.97438 * 22 21 19 52 52 H 0.96993 * 120.00245 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7207 -1.2502 5 6 1.5040 -2.1513 -1.2645 6 7 1.8620 -2.8089 -0.0003 7 6 2.5157 -3.9876 -0.0005 8 8 2.8154 -4.5169 1.0527 9 6 2.8615 -4.6369 -1.2751 10 6 2.2204 -4.4747 -2.4909 11 6 2.9133 -5.2923 -3.3865 12 6 2.6019 -5.4681 -4.8505 13 6 1.2283 -5.0062 -5.3411 14 6 1.5381 -6.5010 -5.2275 15 7 3.8801 -5.8794 -2.7285 16 7 3.8826 -5.5168 -1.4963 17 6 4.8337 -5.9787 -0.4823 18 6 1.4994 -2.1542 1.2640 19 6 2.0399 -0.7209 1.2499 20 1 3.1296 -0.7431 1.2379 21 6 1.5579 0.0190 2.4994 22 7 2.1411 -0.6031 3.6907 23 6 1.8500 -0.1078 4.9337 24 1 1.1909 0.7416 5.0359 25 6 2.4021 -0.6976 6.0625 26 7 2.1228 -0.2212 7.2573 27 14 3.5415 -2.1672 5.8860 28 1 4.9428 -1.6940 5.7522 29 1 3.4237 -3.0321 7.0874 30 1 3.1640 -2.9440 4.6779 31 1 -0.3632 0.5142 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.6954 -0.1933 -2.1399 35 1 3.1292 -0.7430 -1.2386 36 1 1.9456 -2.6971 -2.0982 37 1 0.4194 -2.1314 -1.3716 38 1 1.3659 -3.8488 -2.7021 39 1 3.4463 -5.3447 -5.5288 40 1 0.5496 -4.5756 -4.6049 41 1 1.1688 -4.5793 -6.3422 42 1 1.6822 -7.0569 -6.1539 43 1 1.0635 -7.0537 -4.4166 44 1 4.4029 -6.8171 0.0650 45 1 5.7562 -6.2972 -0.9677 46 1 5.0499 -5.1653 0.2104 47 1 0.4145 -2.1346 1.3673 48 1 1.9380 -2.7020 2.0981 49 1 1.8678 1.0626 2.4459 50 1 0.4707 -0.0347 2.5567 51 1 2.7327 -1.3663 3.5989 52 1 2.5083 -0.6335 8.0461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132854408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:01 Heat of formation + Delta-G solvation = 76.463397 kcal Electronic energy + Delta-G solvation = -31626.060720 eV Core-core repulsion = 27628.248304 eV Total energy + Delta-G solvation = -3997.812416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.77577 -41.41022 -39.33934 -38.06594 -36.89377 -35.21396 -33.94810 -33.69975 -32.61546 -31.43377 -28.90132 -28.27607 -27.50580 -26.21757 -24.76588 -24.20459 -23.59730 -22.98461 -22.59129 -21.80405 -20.39235 -19.70703 -19.20624 -18.28121 -17.83755 -17.37555 -17.00421 -16.79303 -16.43306 -16.20805 -16.01623 -15.83414 -15.39186 -15.25093 -15.00048 -14.89745 -14.62944 -14.48719 -14.11211 -13.91310 -13.86717 -13.62318 -13.41889 -13.01149 -12.93497 -12.85633 -12.66246 -12.42981 -12.26175 -12.25248 -12.11956 -11.94264 -11.89068 -11.72138 -11.52032 -11.41711 -11.30873 -11.20806 -11.04071 -10.99055 -10.19842 -9.83991 -9.67604 -9.31873 -8.07519 -5.39199 0.13826 1.17878 1.31132 1.34356 1.40845 1.40925 1.88771 1.95253 2.41808 2.94801 3.17398 3.24483 3.39751 3.50524 3.76117 3.80462 3.83852 3.97958 4.03175 4.05017 4.13572 4.14969 4.18236 4.26745 4.31611 4.35430 4.42875 4.48119 4.51545 4.55346 4.69692 4.70916 4.75172 4.77340 4.89224 4.89880 4.99947 5.07674 5.09669 5.15251 5.22829 5.26757 5.29026 5.35470 5.38275 5.40483 5.44080 5.60988 5.61340 5.72943 6.17434 6.18662 6.83569 6.99192 7.03459 7.81020 7.97358 9.14041 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.003039 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.146685 B = 9212.792844 C =10791.318931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.065 3.935 6 N -0.584 5.584 7 C 0.578 3.422 8 O -0.581 6.581 9 C -0.045 4.045 10 C -0.181 4.181 11 C 0.053 3.947 12 C -0.091 4.091 13 C -0.147 4.147 14 C -0.171 4.171 15 N -0.292 5.292 16 N -0.269 5.269 17 C 0.089 3.911 18 C 0.125 3.875 19 C -0.094 4.094 20 H 0.058 0.942 21 C 0.162 3.838 22 N -0.762 5.762 23 C -0.228 4.228 24 H 0.065 0.935 25 C -0.058 4.058 26 N -0.980 5.980 27 Si 0.944 3.056 28 H -0.279 1.279 29 H -0.293 1.293 30 H -0.266 1.266 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.203 0.797 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.056 0.944 49 H 0.031 0.969 50 H 0.037 0.963 51 H 0.361 0.639 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -8.092 -33.579 34.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.054 4.054 6 N -0.314 5.314 7 C 0.366 3.634 8 O -0.462 6.462 9 C -0.174 4.174 10 C -0.209 4.209 11 C -0.104 4.104 12 C -0.110 4.110 13 C -0.184 4.184 14 C -0.209 4.209 15 N -0.125 5.125 16 N -0.056 5.056 17 C -0.051 4.051 18 C 0.002 3.998 19 C -0.114 4.114 20 H 0.076 0.924 21 C 0.036 3.964 22 N -0.408 5.408 23 C -0.359 4.359 24 H 0.083 0.917 25 C -0.249 4.249 26 N -0.631 5.631 27 Si 0.772 3.228 28 H -0.205 1.205 29 H -0.220 1.220 30 H -0.191 1.191 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.219 0.781 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.136 0.864 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.055 0.945 51 H 0.194 0.806 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.589 -9.010 -32.864 34.082 hybrid contribution 0.437 -0.411 1.570 1.680 sum -0.152 -9.421 -31.295 32.682 Atomic orbital electron populations 1.21980 0.93871 1.02290 1.02696 1.21073 0.97043 0.99433 0.92350 0.90012 1.21862 1.00598 0.94676 0.98755 1.22982 1.02673 0.94459 0.85336 1.47870 1.55427 1.19143 1.09004 1.17328 0.78027 0.81356 0.86677 1.90834 1.56284 1.65062 1.33983 1.21349 0.97565 1.02133 0.96313 1.22654 1.04475 1.04532 0.89243 1.21563 0.94433 0.97754 0.96601 1.20153 0.95159 1.07996 0.87724 1.23169 0.95092 0.96310 1.03828 1.23060 1.01408 0.93106 1.03353 1.73093 1.24546 1.23343 0.91488 1.45744 1.22486 1.30197 1.07139 1.22309 0.92117 1.01990 0.88658 1.21587 1.00507 0.92685 0.85004 1.21618 0.99879 0.94009 0.95888 0.92357 1.20874 0.96451 0.95117 0.84007 1.42875 1.57932 1.37263 1.02683 1.19068 1.22471 1.10624 0.83739 0.91743 1.25353 1.02539 1.02123 0.94930 1.69848 1.50373 1.45039 0.97803 0.85580 0.79656 0.80466 0.77096 1.20490 1.21952 1.19092 0.93374 0.89996 0.92317 0.86740 0.92614 0.85691 0.88128 0.78064 0.85732 0.87647 0.85899 0.86888 0.89983 0.89340 0.86359 0.89522 0.89763 0.92573 0.95080 0.94469 0.80624 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.11 71.98 0.58 -1.94 16 2 C -0.08 -1.53 2.71 -10.77 -0.03 -1.56 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -1.70 5.61 30.53 0.17 -1.52 16 5 C 0.07 0.97 4.96 86.22 0.43 1.39 16 6 N -0.58 -14.52 2.98 -823.92 -2.45 -16.98 16 7 C 0.58 17.22 7.50 86.59 0.65 17.87 16 8 O -0.58 -22.31 15.03 -4.12 -0.06 -22.37 16 9 C -0.05 -1.11 6.59 40.79 0.27 -0.85 16 10 C -0.18 -3.25 8.00 22.66 0.18 -3.07 16 11 C 0.05 1.01 6.85 43.05 0.30 1.30 16 12 C -0.09 -1.14 6.33 -11.54 -0.07 -1.21 16 13 C -0.15 -1.04 10.03 30.62 0.31 -0.73 16 14 C -0.17 -1.78 10.24 30.62 0.31 -1.46 16 15 N -0.29 -6.96 11.90 -47.50 -0.57 -7.52 16 16 N -0.27 -6.67 3.75 -356.03 -1.33 -8.01 16 17 C 0.09 1.87 10.52 127.77 1.34 3.22 16 18 C 0.12 3.78 5.05 86.36 0.44 4.22 16 19 C -0.09 -2.71 2.15 -10.72 -0.02 -2.74 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 21 C 0.16 6.00 5.19 86.38 0.45 6.45 16 22 N -0.76 -36.96 5.18 -343.44 -1.78 -38.74 16 23 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 24 H 0.06 4.04 8.06 -2.91 -0.02 4.02 16 25 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 26 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 27 Si 0.94 48.87 27.74 68.60 1.90 50.78 16 28 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 30 H -0.27 -13.30 6.52 99.48 0.65 -12.65 16 31 H 0.05 0.98 6.58 -2.39 -0.02 0.97 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.97 4.99 -2.39 -0.01 0.95 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 1.54 3.34 -2.39 -0.01 1.53 16 37 H 0.10 1.06 6.70 -2.39 -0.02 1.05 16 38 H 0.20 2.16 5.28 -2.91 -0.02 2.15 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 0.62 7.22 -2.39 -0.02 0.60 16 41 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 45 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 2.02 7.37 -2.39 -0.02 2.00 16 47 H 0.08 2.40 6.69 -2.39 -0.02 2.38 16 48 H 0.06 2.20 6.20 -2.38 -0.01 2.19 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.04 1.37 6.73 -2.39 -0.02 1.35 16 51 H 0.36 17.58 4.75 -92.71 -0.44 17.14 16 52 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -80.37 397.01 3.11 -77.26 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.45 Total: 25.69 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.65 Total: 3.84 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -5.83 Total: -135.20 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.90 Total: 50.78 kcal Total: -80.37 3.11 -77.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132854408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.725 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds