Wall clock time and date at job start Wed Apr 1 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.44506 * 2 1 4 4 C 1.53036 * 109.46123 * 119.96507 * 2 1 3 5 5 C 1.53190 * 109.31465 * 181.38533 * 4 2 1 6 6 N 1.46926 * 108.77720 * 305.37001 * 5 4 2 7 7 C 1.34778 * 120.62935 * 233.61033 * 6 5 4 8 8 O 1.21577 * 119.99589 * 173.03335 * 7 6 5 9 9 C 1.47703 * 120.00021 * 353.03187 * 7 6 5 10 10 C 1.41503 * 126.51666 * 172.94099 * 9 7 6 11 11 C 1.35370 * 105.49859 * 179.84209 * 10 9 7 12 12 C 1.50708 * 126.38222 * 180.13833 * 11 10 9 13 13 C 1.52995 * 117.49755 * 33.94609 * 12 11 10 14 14 C 1.52995 * 60.00142 * 252.51253 * 13 12 11 15 15 N 1.35031 * 107.23150 * 0.41684 * 11 10 9 16 16 C 1.46500 * 124.88386 * 179.72612 * 15 11 10 17 17 N 1.28462 * 110.23007 * 359.72005 * 15 11 10 18 18 C 1.46925 * 118.74113 * 53.60075 * 6 5 4 19 19 C 1.53039 * 109.46001 * 240.03700 * 2 1 3 20 20 H 1.08995 * 109.49789 * 298.56675 * 19 2 1 21 21 C 1.53000 * 109.52464 * 58.64605 * 19 2 1 22 22 N 1.46500 * 109.47136 * 184.85556 * 21 19 2 23 23 C 1.36937 * 120.00095 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00009 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99836 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00041 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99730 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47233 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.46933 * 119.99899 * 27 25 23 30 30 H 1.48498 * 109.46740 * 239.99420 * 27 25 23 31 31 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46921 * 299.96649 * 1 2 3 33 33 H 1.09005 * 109.47010 * 59.96577 * 1 2 3 34 34 H 1.09002 * 109.49919 * 301.33788 * 4 2 1 35 35 H 1.09001 * 109.49801 * 61.43395 * 4 2 1 36 36 H 1.09003 * 109.58444 * 65.15256 * 5 4 2 37 37 H 1.08999 * 109.59180 * 185.43335 * 5 4 2 38 38 H 1.07993 * 127.25145 * 0.02562 * 10 9 7 39 39 H 1.09004 * 115.54469 * 179.65877 * 12 11 10 40 40 H 1.08999 * 117.50352 * 0.02562 * 13 12 11 41 41 H 1.09001 * 117.49523 * 145.01507 * 13 12 11 42 42 H 1.09003 * 117.49897 * 252.51426 * 14 13 12 43 43 H 1.08999 * 117.49712 * 107.49343 * 14 13 12 44 44 H 1.09002 * 109.47082 * 269.96947 * 16 15 11 45 45 H 1.08992 * 109.47092 * 29.97233 * 16 15 11 46 46 H 1.09007 * 109.46830 * 149.97220 * 16 15 11 47 47 H 1.08996 * 109.59122 * 186.60563 * 18 6 5 48 48 H 1.09010 * 109.58535 * 66.18470 * 18 6 5 49 49 H 1.08999 * 109.47239 * 304.84979 * 21 19 2 50 50 H 1.08995 * 109.47271 * 64.85447 * 21 19 2 51 51 H 0.97005 * 119.99947 * 0.02562 * 22 21 19 52 52 H 0.97007 * 119.99560 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0680 -1.2487 0.0000 7 6 4.9618 -2.2574 -0.0001 8 8 5.2694 -2.7969 -1.0452 9 6 5.5677 -2.7073 1.2696 10 6 6.4063 -3.8327 1.4503 11 6 6.7169 -3.8446 2.7678 12 6 7.5934 -4.8492 3.4706 13 6 8.7726 -5.4286 2.6866 14 6 7.5461 -6.2962 2.9759 15 7 6.0901 -2.7922 3.3361 16 6 6.1584 -2.4440 4.7575 17 7 5.4255 -2.1402 2.4510 18 6 3.5714 -0.6885 -1.2643 19 6 2.0399 -0.7207 -1.2501 20 1 1.6979 -1.7555 -1.2384 21 6 1.5028 -0.0195 -2.4994 22 7 1.8950 -0.7763 -3.6909 23 6 1.5241 -0.3372 -4.9338 24 1 0.9420 0.5668 -5.0356 25 6 1.8953 -1.0546 -6.0627 26 7 2.6043 -2.1566 -5.9385 27 14 1.3899 -0.4552 -7.7582 28 1 0.6044 0.7981 -7.6264 29 1 2.6036 -0.1959 -8.5737 30 1 0.5595 -1.4918 -8.4224 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6573 -0.2207 2.1398 35 1 1.6979 -1.7556 1.2383 36 1 3.9143 0.3410 1.3673 37 1 3.9417 -1.2823 2.0999 38 1 6.7325 -4.5327 0.6954 39 1 7.7304 -4.6869 4.5397 40 1 8.9147 -5.0829 1.6627 41 1 9.6859 -5.6474 3.2399 42 1 7.6524 -7.0860 3.7196 43 1 6.8811 -6.5217 2.1422 44 1 5.3530 -2.9460 5.2936 45 1 7.1186 -2.7618 5.1636 46 1 6.0543 -1.3651 4.8726 47 1 3.9417 -1.2844 -2.0985 48 1 3.9143 0.3411 -1.3674 49 1 0.4155 0.0359 -2.4459 50 1 1.9156 0.9877 -2.5565 51 1 2.4169 -1.5888 -3.5993 52 1 2.8640 -2.6577 -6.7275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132875283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:16 Heat of formation + Delta-G solvation = 89.304926 kcal Electronic energy + Delta-G solvation = -30994.326764 eV Core-core repulsion = 26997.071198 eV Total energy + Delta-G solvation = -3997.255566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.93540 -39.84051 -37.74411 -37.57777 -34.86917 -33.79592 -33.46090 -31.75782 -30.66881 -29.67901 -28.47051 -27.42811 -25.52464 -23.97644 -23.67582 -23.03602 -22.77458 -22.00497 -21.09339 -20.41490 -19.72412 -18.84953 -17.44406 -16.97899 -16.64163 -16.46179 -15.63902 -15.38413 -14.93619 -14.74852 -14.65706 -14.22938 -14.10771 -13.86352 -13.74484 -13.41193 -13.27806 -13.01607 -12.90837 -12.86952 -12.57382 -12.40258 -12.17701 -11.95573 -11.82154 -11.62303 -11.46591 -11.41818 -11.08109 -10.89462 -10.86281 -10.70457 -10.62948 -10.37684 -10.09794 -10.01583 -9.89694 -9.61710 -9.47005 -9.21933 -8.93837 -8.76270 -8.29930 -6.78480 -5.62945 -2.92255 1.45307 1.90283 2.17545 3.21441 3.48320 3.51446 3.56136 3.59077 3.59474 3.94462 4.13489 4.42517 4.51371 4.55598 4.61654 4.68267 4.68461 4.93364 4.94267 5.04926 5.05184 5.13620 5.22241 5.25388 5.35561 5.49297 5.51292 5.55955 5.69314 5.70996 5.73184 5.77967 5.80418 5.82511 5.90047 5.99017 6.07718 6.09860 6.15643 6.29187 6.31322 6.35820 6.44249 6.56421 6.57467 6.69258 6.86623 6.94299 7.01914 7.60591 7.80111 7.81246 8.43417 8.54806 9.65681 10.24925 10.59225 11.59408 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002584 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.748154 B =10835.078166 C =12589.211410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.088 3.912 6 N -0.598 5.598 7 C 0.595 3.405 8 O -0.522 6.522 9 C 0.002 3.998 10 C -0.176 4.176 11 C 0.047 3.953 12 C -0.099 4.099 13 C -0.162 4.162 14 C -0.161 4.161 15 N -0.286 5.286 16 C 0.085 3.915 17 N -0.262 5.262 18 C 0.121 3.879 19 C -0.101 4.101 20 H 0.074 0.926 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.122 0.878 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.066 0.934 49 H 0.027 0.973 50 H 0.018 0.982 51 H 0.385 0.615 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -2.632 29.502 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.036 4.036 6 N -0.330 5.330 7 C 0.380 3.620 8 O -0.396 6.396 9 C -0.158 4.158 10 C -0.204 4.204 11 C -0.078 4.078 12 C -0.119 4.119 13 C -0.199 4.199 14 C -0.199 4.199 15 N -0.073 5.073 16 C -0.055 4.055 17 N -0.097 5.097 18 C -0.001 4.001 19 C -0.120 4.120 20 H 0.092 0.908 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.084 0.916 49 H 0.044 0.956 50 H 0.036 0.964 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.519 -1.871 29.465 30.728 hybrid contribution 0.185 -0.473 -1.170 1.275 sum 8.703 -2.344 28.295 29.696 Atomic orbital electron populations 1.21882 0.95134 1.01869 1.01557 1.21106 0.95797 0.99338 0.94157 0.91187 1.21976 0.95244 1.01197 0.98060 1.22384 0.93981 0.99943 0.87258 1.47966 1.42220 1.34649 1.08176 1.17016 0.79180 0.79614 0.86141 1.90864 1.62032 1.55170 1.31491 1.21981 1.03820 0.97938 0.92064 1.21418 1.03180 1.00806 0.95017 1.20404 1.01332 0.93046 0.92973 1.20276 1.00205 0.93107 0.98311 1.23110 0.92325 1.02710 1.01799 1.23110 1.01306 0.91737 1.03745 1.45391 1.33944 1.19260 1.08676 1.22141 1.04118 1.04015 0.75229 1.73417 1.16313 1.21686 0.98235 1.21767 0.93808 0.98981 0.85538 1.21699 0.94494 1.00747 0.95084 0.90789 1.20721 0.96764 0.94027 0.85399 1.42441 1.65243 1.29297 1.00796 1.19243 1.27623 1.06336 0.83810 0.91242 1.24757 1.00960 0.97586 0.97751 1.69695 1.42358 1.17368 1.28292 0.86148 0.77588 0.77662 0.84982 1.20653 1.21934 1.21979 0.92846 0.93344 0.91693 0.91193 0.91837 0.92032 0.86142 0.82186 0.86735 0.87805 0.88012 0.88005 0.87817 0.89739 0.88873 0.88451 0.87767 0.91574 0.95569 0.96426 0.78062 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.81 37.16 0.33 -1.57 16 2 C -0.08 -1.17 2.23 -90.58 -0.20 -1.37 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -1.53 5.36 -26.61 -0.14 -1.68 16 5 C 0.09 1.14 6.11 -3.71 -0.02 1.12 16 6 N -0.60 -9.90 2.97 -173.93 -0.52 -10.41 16 7 C 0.60 10.84 7.69 -12.39 -0.10 10.75 16 8 O -0.52 -11.56 16.36 5.30 0.09 -11.47 16 9 C 0.00 0.02 6.83 -82.77 -0.57 -0.54 16 10 C -0.18 -2.30 9.86 -39.36 -0.39 -2.69 16 11 C 0.05 0.47 6.60 -82.20 -0.54 -0.08 16 12 C -0.10 -0.65 5.94 -91.77 -0.55 -1.20 16 13 C -0.16 -0.99 10.05 -26.74 -0.27 -1.25 16 14 C -0.16 -0.98 10.05 -26.73 -0.27 -1.25 16 15 N -0.29 -2.75 3.70 -63.85 -0.24 -2.98 16 16 C 0.09 0.38 11.05 59.85 0.66 1.04 16 17 N -0.26 -3.26 8.46 33.42 0.28 -2.98 16 18 C 0.12 2.23 5.53 -3.71 -0.02 2.21 16 19 C -0.10 -1.78 1.92 -90.50 -0.17 -1.95 16 20 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 21 C 0.16 3.33 5.41 -4.04 -0.02 3.31 16 22 N -0.73 -19.56 5.38 -59.91 -0.32 -19.88 16 23 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 24 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -29.61 13.06 55.49 0.72 -28.88 16 27 Si 0.90 23.31 29.55 -169.99 -5.02 18.28 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 30 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.90 6.30 -51.93 -0.33 0.57 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.12 1.51 4.18 -69.50 -0.29 1.22 16 38 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 39 H 0.11 0.49 7.16 -51.93 -0.37 0.11 16 40 H 0.10 0.75 7.95 -51.93 -0.41 0.34 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.20 7.11 -51.93 -0.37 -0.17 16 46 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 2.35 6.20 -51.93 -0.32 2.02 16 48 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 49 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.39 11.04 6.89 -40.82 -0.28 10.76 16 52 H 0.25 7.81 8.31 -40.82 -0.34 7.48 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -36.43 409.67 -9.92 -46.35 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.57 Total: 8.61 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.51 Total: -2.80 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.07 Total: -65.14 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.43 -9.92 -46.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.655 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds