Wall clock time and date at job start Wed Apr 1 2020 03:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.44506 * 2 1 4 4 C 1.53036 * 109.46123 * 119.96507 * 2 1 3 5 5 C 1.53190 * 109.31465 * 181.38533 * 4 2 1 6 6 N 1.46926 * 108.77720 * 305.37001 * 5 4 2 7 7 C 1.34778 * 120.62935 * 233.61033 * 6 5 4 8 8 O 1.21577 * 119.99589 * 173.03335 * 7 6 5 9 9 C 1.47703 * 120.00021 * 353.03187 * 7 6 5 10 10 C 1.41503 * 126.51666 * 172.94099 * 9 7 6 11 11 C 1.35370 * 105.49859 * 179.84209 * 10 9 7 12 12 C 1.50708 * 126.38222 * 180.13833 * 11 10 9 13 13 C 1.52995 * 117.49755 * 33.94609 * 12 11 10 14 14 C 1.52995 * 60.00142 * 252.51253 * 13 12 11 15 15 N 1.35031 * 107.23150 * 0.41684 * 11 10 9 16 16 C 1.46500 * 124.88386 * 179.72612 * 15 11 10 17 17 N 1.28462 * 110.23007 * 359.72005 * 15 11 10 18 18 C 1.46925 * 118.74113 * 53.60075 * 6 5 4 19 19 C 1.53039 * 109.46001 * 240.03700 * 2 1 3 20 20 H 1.08995 * 109.49789 * 298.56675 * 19 2 1 21 21 C 1.53000 * 109.52464 * 58.64605 * 19 2 1 22 22 N 1.46500 * 109.47136 * 184.85556 * 21 19 2 23 23 C 1.36937 * 120.00095 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00009 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99836 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00041 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99730 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47233 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.46933 * 119.99899 * 27 25 23 30 30 H 1.48498 * 109.46740 * 239.99420 * 27 25 23 31 31 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46921 * 299.96649 * 1 2 3 33 33 H 1.09005 * 109.47010 * 59.96577 * 1 2 3 34 34 H 1.09002 * 109.49919 * 301.33788 * 4 2 1 35 35 H 1.09001 * 109.49801 * 61.43395 * 4 2 1 36 36 H 1.09003 * 109.58444 * 65.15256 * 5 4 2 37 37 H 1.08999 * 109.59180 * 185.43335 * 5 4 2 38 38 H 1.07993 * 127.25145 * 0.02562 * 10 9 7 39 39 H 1.09004 * 115.54469 * 179.65877 * 12 11 10 40 40 H 1.08999 * 117.50352 * 0.02562 * 13 12 11 41 41 H 1.09001 * 117.49523 * 145.01507 * 13 12 11 42 42 H 1.09003 * 117.49897 * 252.51426 * 14 13 12 43 43 H 1.08999 * 117.49712 * 107.49343 * 14 13 12 44 44 H 1.09002 * 109.47082 * 269.96947 * 16 15 11 45 45 H 1.08992 * 109.47092 * 29.97233 * 16 15 11 46 46 H 1.09007 * 109.46830 * 149.97220 * 16 15 11 47 47 H 1.08996 * 109.59122 * 186.60563 * 18 6 5 48 48 H 1.09010 * 109.58535 * 66.18470 * 18 6 5 49 49 H 1.08999 * 109.47239 * 304.84979 * 21 19 2 50 50 H 1.08995 * 109.47271 * 64.85447 * 21 19 2 51 51 H 0.97005 * 119.99947 * 0.02562 * 22 21 19 52 52 H 0.97007 * 119.99560 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0680 -1.2487 0.0000 7 6 4.9618 -2.2574 -0.0001 8 8 5.2694 -2.7969 -1.0452 9 6 5.5677 -2.7073 1.2696 10 6 6.4063 -3.8327 1.4503 11 6 6.7169 -3.8446 2.7678 12 6 7.5934 -4.8492 3.4706 13 6 8.7726 -5.4286 2.6866 14 6 7.5461 -6.2962 2.9759 15 7 6.0901 -2.7922 3.3361 16 6 6.1584 -2.4440 4.7575 17 7 5.4255 -2.1402 2.4510 18 6 3.5714 -0.6885 -1.2643 19 6 2.0399 -0.7207 -1.2501 20 1 1.6979 -1.7555 -1.2384 21 6 1.5028 -0.0195 -2.4994 22 7 1.8950 -0.7763 -3.6909 23 6 1.5241 -0.3372 -4.9338 24 1 0.9420 0.5668 -5.0356 25 6 1.8953 -1.0546 -6.0627 26 7 2.6043 -2.1566 -5.9385 27 14 1.3899 -0.4552 -7.7582 28 1 0.6044 0.7981 -7.6264 29 1 2.6036 -0.1959 -8.5737 30 1 0.5595 -1.4918 -8.4224 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6573 -0.2207 2.1398 35 1 1.6979 -1.7556 1.2383 36 1 3.9143 0.3410 1.3673 37 1 3.9417 -1.2823 2.0999 38 1 6.7325 -4.5327 0.6954 39 1 7.7304 -4.6869 4.5397 40 1 8.9147 -5.0829 1.6627 41 1 9.6859 -5.6474 3.2399 42 1 7.6524 -7.0860 3.7196 43 1 6.8811 -6.5217 2.1422 44 1 5.3530 -2.9460 5.2936 45 1 7.1186 -2.7618 5.1636 46 1 6.0543 -1.3651 4.8726 47 1 3.9417 -1.2844 -2.0985 48 1 3.9143 0.3411 -1.3674 49 1 0.4155 0.0359 -2.4459 50 1 1.9156 0.9877 -2.5565 51 1 2.4169 -1.5888 -3.5993 52 1 2.8640 -2.6577 -6.7275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132875283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:14 Heat of formation + Delta-G solvation = 65.674470 kcal Electronic energy + Delta-G solvation = -30995.351457 eV Core-core repulsion = 26997.071198 eV Total energy + Delta-G solvation = -3998.280259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.83265 -41.19054 -39.14598 -38.14694 -36.63442 -35.18763 -34.41052 -33.52943 -31.74261 -31.26494 -29.56291 -28.42440 -27.13721 -25.26411 -24.74777 -24.45947 -23.23767 -23.05671 -22.59566 -21.39973 -20.96125 -19.93587 -19.13359 -18.28818 -17.71718 -17.35895 -16.97697 -16.74703 -16.22853 -15.99584 -15.60712 -15.49388 -15.40800 -15.18795 -15.05067 -14.74389 -14.46229 -14.28412 -14.15158 -14.08625 -13.58597 -13.40143 -13.14463 -13.05401 -12.84822 -12.81773 -12.68559 -12.64197 -12.41148 -12.19114 -12.15097 -12.02816 -11.91082 -11.87918 -11.68007 -11.41216 -11.36832 -11.21486 -10.97383 -10.76993 -10.16953 -9.76880 -9.63963 -8.99728 -7.93642 -5.24441 0.41091 0.94493 1.44591 1.45100 1.47312 1.57359 1.96679 2.24773 2.55530 3.02821 3.12689 3.38893 3.45284 3.60487 3.73231 3.82940 3.86607 3.97068 4.05831 4.07307 4.10107 4.21399 4.28841 4.37378 4.42071 4.43773 4.53465 4.56523 4.59511 4.68884 4.69757 4.75337 4.78922 4.82119 4.90069 4.94334 4.94991 5.02763 5.06811 5.11181 5.17081 5.21835 5.22275 5.26932 5.30948 5.43686 5.48614 5.55599 5.57022 5.86484 6.26558 6.32617 6.79586 7.08586 7.31598 8.08155 8.30866 9.30176 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002584 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.748154 B =10835.078166 C =12589.211410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.118 4.118 5 C 0.085 3.915 6 N -0.595 5.595 7 C 0.586 3.414 8 O -0.582 6.582 9 C -0.033 4.033 10 C -0.206 4.206 11 C 0.063 3.937 12 C -0.099 4.099 13 C -0.162 4.162 14 C -0.162 4.162 15 N -0.272 5.272 16 C 0.070 3.930 17 N -0.256 5.256 18 C 0.127 3.873 19 C -0.087 4.087 20 H 0.047 0.953 21 C 0.158 3.842 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.081 0.919 25 C -0.083 4.083 26 N -0.973 5.973 27 Si 0.978 3.022 28 H -0.261 1.261 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.108 0.892 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.025 0.975 51 H 0.369 0.631 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -1.081 33.866 34.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.037 4.037 6 N -0.326 5.326 7 C 0.373 3.627 8 O -0.461 6.461 9 C -0.190 4.190 10 C -0.234 4.234 11 C -0.062 4.062 12 C -0.119 4.119 13 C -0.200 4.200 14 C -0.199 4.199 15 N -0.059 5.059 16 C -0.068 4.068 17 N -0.093 5.093 18 C 0.004 3.996 19 C -0.107 4.107 20 H 0.066 0.934 21 C 0.032 3.968 22 N -0.391 5.391 23 C -0.374 4.374 24 H 0.099 0.901 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.807 3.193 28 H -0.185 1.185 29 H -0.222 1.222 30 H -0.220 1.220 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.154 -0.250 33.904 34.871 hybrid contribution 0.320 -0.944 -2.359 2.561 sum 8.473 -1.194 31.544 32.685 Atomic orbital electron populations 1.21849 0.94010 1.01651 1.02564 1.21100 0.96632 0.99579 0.92411 0.89645 1.21959 0.94259 1.00756 0.98644 1.22674 0.94721 1.00783 0.85497 1.48065 1.41632 1.34155 1.08751 1.17581 0.78978 0.79292 0.86807 1.90813 1.64091 1.57249 1.33905 1.21513 1.06000 0.99731 0.91743 1.21472 1.04353 1.00856 0.96757 1.20763 1.00411 0.93192 0.91883 1.20533 0.99461 0.92089 0.99792 1.23164 0.93273 1.02444 1.01099 1.23161 1.00825 0.92208 1.03721 1.45925 1.31812 1.18107 1.10067 1.22720 1.06816 1.05330 0.71968 1.73267 1.16688 1.21698 0.97629 1.21481 0.94469 0.98279 0.85344 1.21551 0.93610 0.99485 0.96022 0.93442 1.20910 0.97236 0.93862 0.84799 1.42712 1.65083 1.29269 1.02077 1.19715 1.26599 1.06234 0.84900 0.90149 1.25699 1.01665 0.98011 1.02063 1.69897 1.44357 1.19085 1.29049 0.84997 0.77056 0.77698 0.79546 1.18511 1.22169 1.22025 0.93711 0.90086 0.92892 0.87134 0.93090 0.90218 0.85223 0.83601 0.82982 0.89924 0.85494 0.85503 0.89928 0.87586 0.85758 0.87296 0.92872 0.90756 0.94619 0.95676 0.79912 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.81 71.98 0.63 -2.73 16 2 C -0.08 -2.02 2.23 -10.77 -0.02 -2.04 16 3 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -2.58 5.36 30.67 0.16 -2.42 16 5 C 0.08 2.09 6.11 86.36 0.53 2.62 16 6 N -0.59 -20.72 2.97 -822.46 -2.44 -23.16 16 7 C 0.59 23.27 7.69 86.74 0.67 23.94 16 8 O -0.58 -28.97 16.36 -3.96 -0.06 -29.04 16 9 C -0.03 -1.04 6.83 42.45 0.29 -0.75 16 10 C -0.21 -5.75 9.86 22.41 0.22 -5.53 16 11 C 0.06 1.18 6.60 41.41 0.27 1.45 16 12 C -0.10 -1.04 5.94 -11.54 -0.07 -1.10 16 13 C -0.16 -1.73 10.05 30.59 0.31 -1.42 16 14 C -0.16 -1.72 10.05 30.59 0.31 -1.41 16 15 N -0.27 -4.57 3.70 -355.91 -1.32 -5.89 16 16 C 0.07 0.31 11.05 127.77 1.41 1.72 16 17 N -0.26 -6.13 8.46 -48.18 -0.41 -6.54 16 18 C 0.13 5.03 5.53 86.36 0.48 5.50 16 19 C -0.09 -3.18 1.92 -10.72 -0.02 -3.20 16 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 21 C 0.16 6.80 5.41 86.38 0.47 7.27 16 22 N -0.75 -41.85 5.38 -343.46 -1.85 -43.70 16 23 C -0.24 -14.50 9.99 84.03 0.84 -13.66 16 24 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 25 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 26 N -0.97 -65.03 13.06 21.65 0.28 -64.74 16 27 Si 0.98 49.05 29.55 68.60 2.03 51.08 16 28 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 30 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.37 6.30 -2.38 -0.02 1.35 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.13 3.04 4.18 -25.11 -0.10 2.93 16 38 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.15 0.48 7.16 -2.38 -0.02 0.46 16 40 H 0.08 1.25 7.95 -2.39 -0.02 1.23 16 41 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 1.25 7.96 -2.39 -0.02 1.23 16 44 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.12 -0.16 7.11 -2.39 -0.02 -0.18 16 46 H 0.11 0.31 8.14 -2.38 -0.02 0.30 16 47 H 0.05 2.66 6.20 -2.39 -0.01 2.65 16 48 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 49 H 0.04 1.49 6.15 -2.39 -0.01 1.48 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.37 22.79 6.89 -92.70 -0.64 22.15 16 52 H 0.25 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -87.08 409.67 3.36 -83.72 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.19 Total: 34.66 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.94 Total: 3.60 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -5.73 Total: -144.03 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.04 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -87.08 3.36 -83.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.395 kcal (2) G-P(sol) polarization free energy of solvation -87.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds