Wall clock time and date at job start Wed Apr 1 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46084 * 2 1 4 4 C 1.53038 * 109.44847 * 240.03454 * 2 1 3 5 5 C 1.52762 * 109.38476 * 301.22291 * 4 2 1 6 6 N 1.46928 * 109.01097 * 305.59467 * 5 4 2 7 7 C 1.34772 * 120.62896 * 233.58578 * 6 5 4 8 8 O 1.21635 * 119.99948 * 184.94679 * 7 6 5 9 9 C 1.47164 * 120.00169 * 4.93536 * 7 6 5 10 10 C 1.38408 * 126.87731 * 93.73724 * 9 7 6 11 11 C 1.50697 * 127.32539 * 0.04863 * 10 9 7 12 12 C 1.53002 * 117.50046 * 189.03949 * 11 10 9 13 13 C 1.52996 * 117.50088 * 120.38057 * 11 10 9 14 14 C 1.39678 * 105.35600 * 180.26670 * 10 9 7 15 15 N 1.30864 * 107.86107 * 359.74358 * 14 10 9 16 16 N 1.28447 * 110.92899 * 0.02562 * 15 14 10 17 17 C 1.46497 * 125.19425 * 179.97438 * 16 15 14 18 18 C 1.46927 * 118.73924 * 53.30287 * 6 5 4 19 19 C 1.53037 * 109.46062 * 119.97079 * 2 1 3 20 20 H 1.08995 * 109.50506 * 178.59087 * 19 2 1 21 21 C 1.53003 * 109.52573 * 298.67583 * 19 2 1 22 22 N 1.46501 * 109.47119 * 184.85094 * 21 19 2 23 23 C 1.36942 * 119.99803 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99767 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99978 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99875 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00008 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47181 * 59.99373 * 27 25 23 29 29 H 1.48502 * 109.46764 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46756 * 299.99328 * 27 25 23 31 31 H 1.09004 * 109.47102 * 300.03015 * 1 2 3 32 32 H 1.09002 * 109.46846 * 60.02936 * 1 2 3 33 33 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.50163 * 61.30436 * 4 2 1 35 35 H 1.09005 * 109.49304 * 181.37016 * 4 2 1 36 36 H 1.08997 * 109.51104 * 185.70724 * 5 4 2 37 37 H 1.09003 * 109.42696 * 65.42315 * 5 4 2 38 38 H 1.08998 * 115.54555 * 334.70614 * 11 10 9 39 39 H 1.09000 * 117.49626 * 359.97438 * 12 11 10 40 40 H 1.08997 * 117.50144 * 145.01715 * 12 11 10 41 41 H 1.08998 * 117.49552 * 214.98148 * 13 11 10 42 42 H 1.09004 * 117.49794 * 359.97310 * 13 11 10 43 43 H 1.07995 * 126.07087 * 179.72233 * 14 10 9 44 44 H 1.09004 * 109.47203 * 85.39321 * 17 16 15 45 45 H 1.08995 * 109.47308 * 205.39591 * 17 16 15 46 46 H 1.09003 * 109.46829 * 325.39948 * 17 16 15 47 47 H 1.08998 * 109.58502 * 66.43574 * 18 6 5 48 48 H 1.08998 * 109.58652 * 186.71907 * 18 6 5 49 49 H 1.08995 * 109.47009 * 304.85578 * 21 19 2 50 50 H 1.09003 * 109.46732 * 64.85304 * 21 19 2 51 51 H 0.97000 * 120.00221 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00205 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 1.5040 -2.1514 -1.2643 6 7 1.8620 -2.8090 -0.0001 7 6 2.5157 -3.9875 -0.0002 8 8 2.7270 -4.5659 1.0488 9 6 2.9737 -4.5748 -1.2695 10 6 4.2218 -4.4289 -1.8497 11 6 5.3905 -3.6407 -1.3170 12 6 6.5969 -3.4553 -2.2396 13 6 6.6885 -4.4018 -1.0401 14 6 4.1661 -5.1634 -3.0365 15 7 2.9736 -5.6950 -3.1239 16 7 2.2531 -5.3752 -2.1097 17 6 0.8681 -5.7993 -1.8905 18 6 1.4993 -2.1542 1.2642 19 6 2.0399 -0.7208 1.2500 20 1 3.1295 -0.7432 1.2382 21 6 1.5578 0.0191 2.4994 22 7 2.1408 -0.6029 3.6908 23 6 1.8497 -0.1076 4.9338 24 1 1.1906 0.7419 5.0358 25 6 2.4025 -0.6966 6.0627 26 7 3.2062 -1.7316 5.9383 27 14 2.0060 -0.0205 7.7582 28 1 0.5418 -0.0997 7.9927 29 1 2.7159 -0.8204 8.7885 30 1 2.4447 1.3958 7.8413 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6956 -0.1934 -2.1398 35 1 3.1293 -0.7425 -1.2387 36 1 1.9457 -2.6972 -2.0980 37 1 0.4195 -2.1315 -1.3715 38 1 5.1370 -2.8179 -0.6485 39 1 6.5454 -3.9039 -3.2317 40 1 7.1374 -2.5108 -2.1778 41 1 7.2892 -4.0795 -0.1896 42 1 6.6970 -5.4728 -1.2428 43 1 4.9653 -5.2728 -3.7546 44 1 0.8594 -6.7770 -1.4086 45 1 0.3631 -5.0748 -1.2516 46 1 0.3514 -5.8617 -2.8482 47 1 0.4144 -2.1346 1.3674 48 1 1.9358 -2.7033 2.0985 49 1 1.8677 1.0627 2.4458 50 1 0.4706 -0.0346 2.5566 51 1 2.7331 -1.3657 3.5991 52 1 3.5922 -2.1435 6.7271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132885180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:38 Heat of formation + Delta-G solvation = 82.385011 kcal Electronic energy + Delta-G solvation = -32080.688000 eV Core-core repulsion = 28083.132364 eV Total energy + Delta-G solvation = -3997.555636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.73842 -40.20698 -38.03753 -37.33216 -34.98752 -33.60838 -33.28953 -31.95000 -30.98844 -29.80808 -27.73587 -27.30804 -25.82863 -24.91588 -23.72716 -23.17660 -22.53454 -22.13850 -21.19824 -20.21548 -19.49593 -18.39098 -17.69100 -16.97533 -16.71592 -15.87632 -15.86994 -15.63551 -15.08272 -14.97530 -14.89925 -14.45363 -14.36842 -14.00030 -13.59594 -13.45508 -13.17744 -13.15134 -13.00683 -12.96762 -12.73339 -12.47176 -12.10857 -11.99976 -11.70444 -11.60931 -11.29262 -11.13118 -11.08085 -10.92739 -10.80396 -10.78597 -10.67762 -10.42248 -10.32726 -10.23279 -10.08093 -9.88930 -9.60072 -9.26970 -8.84016 -8.62471 -8.57160 -6.88350 -5.70926 -3.00908 1.51830 2.01646 2.44752 2.62633 3.03332 3.46621 3.50738 3.52438 3.87289 4.17108 4.27873 4.59151 4.65441 4.68123 4.77904 4.80717 4.81316 4.87877 4.95892 5.04047 5.07993 5.10924 5.13754 5.20691 5.32380 5.34878 5.48703 5.54666 5.58966 5.63935 5.66250 5.73399 5.78588 5.84197 5.86915 5.91372 5.99576 6.04294 6.10165 6.14393 6.29086 6.30312 6.32102 6.33688 6.50928 6.53153 6.61317 6.75415 6.86936 7.32267 7.72788 7.89364 8.06787 8.46679 9.57644 10.15245 10.49275 11.51211 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.003154 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.724661 B = 8874.983853 C = 9591.834111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.127 4.127 5 C 0.107 3.893 6 N -0.597 5.597 7 C 0.585 3.415 8 O -0.508 6.508 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.082 4.082 12 C -0.170 4.170 13 C -0.167 4.167 14 C 0.008 3.992 15 N -0.286 5.286 16 N -0.276 5.276 17 C 0.088 3.912 18 C 0.120 3.880 19 C -0.102 4.102 20 H 0.074 0.926 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.183 0.817 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.021 0.979 50 H 0.023 0.977 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -3.326 -23.698 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.165 4.165 5 C -0.016 4.016 6 N -0.330 5.330 7 C 0.369 3.631 8 O -0.381 6.381 9 C -0.141 4.141 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.207 4.207 13 C -0.204 4.204 14 C -0.170 4.170 15 N -0.116 5.116 16 N -0.064 5.064 17 C -0.052 4.052 18 C -0.001 4.001 19 C -0.121 4.121 20 H 0.093 0.907 21 C 0.033 3.967 22 N -0.378 5.378 23 C -0.375 4.375 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.200 0.800 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.090 0.910 48 H 0.123 0.877 49 H 0.039 0.961 50 H 0.041 0.959 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.651 -4.305 -23.617 24.152 hybrid contribution 0.473 0.602 1.407 1.601 sum -2.178 -3.704 -22.210 22.622 Atomic orbital electron populations 1.21988 0.95233 1.01882 1.01883 1.21080 0.96000 0.99493 0.93799 0.90659 1.21845 1.01413 0.94720 0.98551 1.21667 1.00139 0.94084 0.85683 1.48149 1.56099 1.20486 1.08272 1.17103 0.78077 0.81291 0.86632 1.90926 1.54493 1.60829 1.31814 1.21270 0.94194 1.02897 0.95689 1.19757 0.93233 1.04190 0.96286 1.20165 0.86346 1.00729 1.02931 1.22977 1.00753 1.01614 0.95346 1.23017 0.99190 0.98307 0.99885 1.23311 0.95005 1.00138 0.98561 1.73127 1.05247 1.23128 1.10094 1.45501 1.12080 1.35101 1.13750 1.22169 0.76378 1.02390 1.04305 1.21846 1.00201 0.93084 0.84997 1.21692 1.00966 0.94157 0.95301 0.90719 1.20674 0.95993 0.94747 0.85286 1.42410 1.57034 1.37549 1.00785 1.19145 1.23530 1.11017 0.83775 0.91309 1.24746 0.99976 0.98262 0.97779 1.69661 1.35382 1.24014 1.28672 0.86297 0.77629 0.78012 0.84395 1.21309 1.21698 1.21323 0.91682 0.93119 0.92574 0.90800 0.91303 0.90471 0.91059 0.87134 0.88639 0.88411 0.88273 0.88656 0.80043 0.89475 0.89008 0.88314 0.90989 0.87745 0.96101 0.95931 0.78138 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.11 37.16 0.30 -1.31 16 2 C -0.08 -0.99 2.71 -90.58 -0.25 -1.23 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.26 5.61 -26.83 -0.15 -1.41 16 5 C 0.11 1.11 5.86 -3.93 -0.02 1.08 16 6 N -0.60 -8.18 2.98 -174.39 -0.52 -8.70 16 7 C 0.59 9.30 6.71 -12.64 -0.08 9.21 16 8 O -0.51 -10.45 16.54 5.25 0.09 -10.36 16 9 C -0.01 -0.16 4.64 -82.06 -0.38 -0.55 16 10 C -0.12 -1.57 5.94 -104.02 -0.62 -2.19 16 11 C -0.08 -0.98 6.12 -91.77 -0.56 -1.54 16 12 C -0.17 -1.53 10.06 -26.70 -0.27 -1.79 16 13 C -0.17 -1.79 10.24 -26.70 -0.27 -2.06 16 14 C 0.01 0.08 11.41 -17.43 -0.20 -0.11 16 15 N -0.29 -3.48 11.90 30.59 0.36 -3.12 16 16 N -0.28 -3.29 3.75 -63.88 -0.24 -3.53 16 17 C 0.09 0.73 11.21 59.85 0.67 1.40 16 18 C 0.12 1.93 5.04 -3.71 -0.02 1.91 16 19 C -0.10 -1.58 2.15 -90.50 -0.19 -1.78 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C 0.16 3.12 5.19 -4.04 -0.02 3.10 16 22 N -0.73 -18.55 5.38 -59.91 -0.32 -18.87 16 23 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 27 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.59 4.99 -51.93 -0.26 0.33 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.07 0.63 6.70 -51.93 -0.35 0.29 16 38 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.10 0.72 7.12 -51.93 -0.37 0.35 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.18 1.50 7.34 -52.49 -0.39 1.12 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.72 7.65 -51.93 -0.40 0.32 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 48 H 0.10 2.14 6.24 -51.93 -0.32 1.81 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 51 H 0.38 10.45 6.90 -40.82 -0.28 10.17 16 52 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -34.52 408.06 -9.44 -43.97 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.35 Total: 9.53 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.31 Total: -4.70 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.01 Total: -62.22 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.52 -9.44 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132885180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.352 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds