Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46084 * 2 1 4 4 C 1.53038 * 109.44847 * 240.03454 * 2 1 3 5 5 C 1.52762 * 109.38476 * 301.22291 * 4 2 1 6 6 N 1.46928 * 109.01097 * 305.59467 * 5 4 2 7 7 C 1.34772 * 120.62896 * 233.58578 * 6 5 4 8 8 O 1.21635 * 119.99948 * 184.94679 * 7 6 5 9 9 C 1.47164 * 120.00169 * 4.93536 * 7 6 5 10 10 C 1.38408 * 126.87731 * 93.73724 * 9 7 6 11 11 C 1.50697 * 127.32539 * 0.04863 * 10 9 7 12 12 C 1.53002 * 117.50046 * 189.03949 * 11 10 9 13 13 C 1.52996 * 117.50088 * 120.38057 * 11 10 9 14 14 C 1.39678 * 105.35600 * 180.26670 * 10 9 7 15 15 N 1.30864 * 107.86107 * 359.74358 * 14 10 9 16 16 N 1.28447 * 110.92899 * 0.02562 * 15 14 10 17 17 C 1.46497 * 125.19425 * 179.97438 * 16 15 14 18 18 C 1.46927 * 118.73924 * 53.30287 * 6 5 4 19 19 C 1.53037 * 109.46062 * 119.97079 * 2 1 3 20 20 H 1.08995 * 109.50506 * 178.59087 * 19 2 1 21 21 C 1.53003 * 109.52573 * 298.67583 * 19 2 1 22 22 N 1.46501 * 109.47119 * 184.85094 * 21 19 2 23 23 C 1.36942 * 119.99803 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99767 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99978 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99875 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00008 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47181 * 59.99373 * 27 25 23 29 29 H 1.48502 * 109.46764 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46756 * 299.99328 * 27 25 23 31 31 H 1.09004 * 109.47102 * 300.03015 * 1 2 3 32 32 H 1.09002 * 109.46846 * 60.02936 * 1 2 3 33 33 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.50163 * 61.30436 * 4 2 1 35 35 H 1.09005 * 109.49304 * 181.37016 * 4 2 1 36 36 H 1.08997 * 109.51104 * 185.70724 * 5 4 2 37 37 H 1.09003 * 109.42696 * 65.42315 * 5 4 2 38 38 H 1.08998 * 115.54555 * 334.70614 * 11 10 9 39 39 H 1.09000 * 117.49626 * 359.97438 * 12 11 10 40 40 H 1.08997 * 117.50144 * 145.01715 * 12 11 10 41 41 H 1.08998 * 117.49552 * 214.98148 * 13 11 10 42 42 H 1.09004 * 117.49794 * 359.97310 * 13 11 10 43 43 H 1.07995 * 126.07087 * 179.72233 * 14 10 9 44 44 H 1.09004 * 109.47203 * 85.39321 * 17 16 15 45 45 H 1.08995 * 109.47308 * 205.39591 * 17 16 15 46 46 H 1.09003 * 109.46829 * 325.39948 * 17 16 15 47 47 H 1.08998 * 109.58502 * 66.43574 * 18 6 5 48 48 H 1.08998 * 109.58652 * 186.71907 * 18 6 5 49 49 H 1.08995 * 109.47009 * 304.85578 * 21 19 2 50 50 H 1.09003 * 109.46732 * 64.85304 * 21 19 2 51 51 H 0.97000 * 120.00221 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00205 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 1.5040 -2.1514 -1.2643 6 7 1.8620 -2.8090 -0.0001 7 6 2.5157 -3.9875 -0.0002 8 8 2.7270 -4.5659 1.0488 9 6 2.9737 -4.5748 -1.2695 10 6 4.2218 -4.4289 -1.8497 11 6 5.3905 -3.6407 -1.3170 12 6 6.5969 -3.4553 -2.2396 13 6 6.6885 -4.4018 -1.0401 14 6 4.1661 -5.1634 -3.0365 15 7 2.9736 -5.6950 -3.1239 16 7 2.2531 -5.3752 -2.1097 17 6 0.8681 -5.7993 -1.8905 18 6 1.4993 -2.1542 1.2642 19 6 2.0399 -0.7208 1.2500 20 1 3.1295 -0.7432 1.2382 21 6 1.5578 0.0191 2.4994 22 7 2.1408 -0.6029 3.6908 23 6 1.8497 -0.1076 4.9338 24 1 1.1906 0.7419 5.0358 25 6 2.4025 -0.6966 6.0627 26 7 3.2062 -1.7316 5.9383 27 14 2.0060 -0.0205 7.7582 28 1 0.5418 -0.0997 7.9927 29 1 2.7159 -0.8204 8.7885 30 1 2.4447 1.3958 7.8413 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6956 -0.1934 -2.1398 35 1 3.1293 -0.7425 -1.2387 36 1 1.9457 -2.6972 -2.0980 37 1 0.4195 -2.1315 -1.3715 38 1 5.1370 -2.8179 -0.6485 39 1 6.5454 -3.9039 -3.2317 40 1 7.1374 -2.5108 -2.1778 41 1 7.2892 -4.0795 -0.1896 42 1 6.6970 -5.4728 -1.2428 43 1 4.9653 -5.2728 -3.7546 44 1 0.8594 -6.7770 -1.4086 45 1 0.3631 -5.0748 -1.2516 46 1 0.3514 -5.8617 -2.8482 47 1 0.4144 -2.1346 1.3674 48 1 1.9358 -2.7033 2.0985 49 1 1.8677 1.0627 2.4458 50 1 0.4706 -0.0346 2.5566 51 1 2.7331 -1.3657 3.5991 52 1 3.5922 -2.1435 6.7271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132885180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = 60.504149 kcal Electronic energy + Delta-G solvation = -32081.636825 eV Core-core repulsion = 28083.132364 eV Total energy + Delta-G solvation = -3998.504461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.66329 -41.38664 -39.31908 -38.17768 -36.67600 -35.00392 -34.11633 -33.54603 -32.15060 -31.33905 -28.77916 -28.13217 -27.37195 -26.07631 -24.95595 -24.61394 -23.42225 -23.09620 -22.60640 -21.10207 -20.61027 -19.59540 -18.94163 -18.70994 -17.81707 -16.92459 -16.83256 -16.76918 -16.57653 -16.15528 -15.99766 -15.74212 -15.38260 -15.24544 -15.17381 -14.60636 -14.51182 -14.35548 -14.11208 -13.89833 -13.80315 -13.66742 -13.06494 -13.05054 -12.99208 -12.84516 -12.66883 -12.49608 -12.35843 -12.19911 -12.07631 -12.02265 -11.90619 -11.78939 -11.67870 -11.47271 -11.30786 -11.26101 -11.15722 -10.91992 -10.18354 -9.76308 -9.54337 -9.00167 -7.94101 -5.24484 0.53531 0.97628 1.45196 1.49069 1.51172 1.55438 1.57600 1.98140 2.55587 3.03232 3.20773 3.38857 3.40766 3.64408 3.75027 3.81174 3.89798 3.95097 4.01064 4.08749 4.16579 4.19280 4.20796 4.23572 4.27911 4.35425 4.43017 4.47548 4.50595 4.55064 4.63966 4.73407 4.78551 4.80254 4.87492 4.89032 4.96230 5.04241 5.09136 5.13910 5.22798 5.23496 5.27837 5.28607 5.34122 5.40879 5.45112 5.48839 5.58907 5.70626 6.15731 6.26169 6.84577 6.99114 7.31901 8.08585 8.30287 9.29068 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.003154 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.724661 B = 8874.983853 C = 9591.834111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.083 0.917 4 C -0.120 4.120 5 C 0.105 3.895 6 N -0.587 5.587 7 C 0.587 3.413 8 O -0.571 6.571 9 C -0.035 4.035 10 C -0.127 4.127 11 C -0.108 4.108 12 C -0.137 4.137 13 C -0.178 4.178 14 C 0.011 3.989 15 N -0.289 5.289 16 N -0.274 5.274 17 C 0.079 3.921 18 C 0.129 3.871 19 C -0.089 4.089 20 H 0.050 0.950 21 C 0.160 3.840 22 N -0.748 5.748 23 C -0.246 4.246 24 H 0.080 0.920 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.975 3.025 28 H -0.276 1.276 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.214 0.786 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.025 0.975 50 H 0.033 0.967 51 H 0.370 0.630 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 -1.964 -26.996 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.101 0.899 4 C -0.158 4.158 5 C -0.016 4.016 6 N -0.318 5.318 7 C 0.372 3.628 8 O -0.449 6.449 9 C -0.163 4.163 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.173 4.173 13 C -0.215 4.215 14 C -0.166 4.166 15 N -0.120 5.120 16 N -0.062 5.062 17 C -0.060 4.060 18 C 0.007 3.993 19 C -0.109 4.109 20 H 0.069 0.931 21 C 0.034 3.966 22 N -0.391 5.391 23 C -0.378 4.378 24 H 0.097 0.903 25 C -0.270 4.270 26 N -0.622 5.622 27 Si 0.804 3.196 28 H -0.202 1.202 29 H -0.224 1.224 30 H -0.201 1.201 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.146 0.854 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.043 0.957 50 H 0.051 0.949 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.837 -2.877 -26.985 27.408 hybrid contribution 0.803 0.208 2.372 2.513 sum -3.034 -2.670 -24.613 24.943 Atomic orbital electron populations 1.21966 0.93775 1.02171 1.02745 1.21058 0.97084 0.99393 0.92125 0.89868 1.21834 1.00843 0.94258 0.98869 1.21964 1.01757 0.94100 0.83784 1.48165 1.54964 1.19851 1.08818 1.17452 0.77213 0.81364 0.86737 1.90888 1.57085 1.62667 1.34222 1.21004 0.95349 1.04610 0.95342 1.19957 0.92812 1.04229 0.96737 1.20132 0.87202 1.00753 1.04639 1.23098 0.97412 1.01399 0.95420 1.23064 0.98420 0.98848 1.01159 1.23763 0.95414 0.99093 0.98327 1.73130 1.05700 1.23048 1.10084 1.45771 1.12928 1.34389 1.13155 1.22460 0.75076 1.02453 1.06057 1.21525 1.00209 0.92827 0.84745 1.21542 0.99436 0.93921 0.95968 0.93138 1.20862 0.96124 0.94813 0.84813 1.42676 1.57067 1.37351 1.02000 1.19630 1.22538 1.10650 0.84982 0.90251 1.25629 1.00531 0.98936 1.01858 1.69860 1.37268 1.25905 1.29194 0.85191 0.77665 0.77492 0.79291 1.20161 1.22447 1.20109 0.93027 0.90089 0.92547 0.87113 0.92338 0.89711 0.88516 0.89646 0.86203 0.87292 0.88958 0.88409 0.76967 0.89260 0.88885 0.85426 0.89929 0.92960 0.95721 0.94907 0.79869 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.11 71.98 0.58 -2.13 16 2 C -0.08 -1.66 2.71 -10.77 -0.03 -1.68 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.12 -2.05 5.61 30.53 0.17 -1.88 16 5 C 0.11 1.95 5.86 86.22 0.51 2.46 16 6 N -0.59 -16.49 2.98 -823.90 -2.45 -18.94 16 7 C 0.59 19.73 6.71 86.59 0.58 20.31 16 8 O -0.57 -25.71 16.54 -4.14 -0.07 -25.77 16 9 C -0.03 -0.95 4.64 40.79 0.19 -0.76 16 10 C -0.13 -3.15 5.94 -19.48 -0.12 -3.26 16 11 C -0.11 -2.59 6.12 -11.54 -0.07 -2.66 16 12 C -0.14 -2.19 10.06 30.62 0.31 -1.88 16 13 C -0.18 -3.81 10.24 30.62 0.31 -3.49 16 14 C 0.01 0.22 11.41 85.19 0.97 1.19 16 15 N -0.29 -6.45 11.90 -57.14 -0.68 -7.13 16 16 N -0.27 -6.23 3.75 -356.02 -1.33 -7.57 16 17 C 0.08 1.21 11.21 127.77 1.43 2.64 16 18 C 0.13 4.38 5.04 86.36 0.43 4.81 16 19 C -0.09 -2.84 2.15 -10.71 -0.02 -2.87 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 C 0.16 6.32 5.19 86.38 0.45 6.77 16 22 N -0.75 -39.47 5.38 -343.44 -1.85 -41.32 16 23 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 24 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 25 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 26 N -0.97 -62.77 13.06 21.65 0.28 -62.49 16 27 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 29 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 30 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 31 H 0.05 1.09 6.58 -2.38 -0.02 1.07 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.02 4.99 -2.39 -0.01 1.01 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 1.53 6.32 -2.39 -0.02 1.52 16 37 H 0.10 1.38 6.70 -2.39 -0.02 1.36 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.12 1.35 7.12 -2.39 -0.02 1.33 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.21 2.73 7.34 -2.91 -0.02 2.71 16 44 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 45 H 0.09 1.39 7.65 -2.39 -0.02 1.37 16 46 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 2.58 6.69 -2.39 -0.02 2.57 16 48 H 0.05 2.35 6.24 -2.39 -0.01 2.34 16 49 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.03 1.25 6.73 -2.39 -0.02 1.24 16 51 H 0.37 21.51 6.90 -92.71 -0.64 20.87 16 52 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -80.17 408.06 3.23 -76.94 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.29 Total: 36.65 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 7.01 Total: 0.13 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -6.03 Total: -137.45 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -80.17 3.23 -76.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132885180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.447 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds