Wall clock time and date at job start Wed Apr 1 2020 03:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46252 * 2 1 4 4 C 1.53042 * 109.44611 * 240.03786 * 2 1 3 5 5 C 1.53627 * 109.24111 * 178.49678 * 4 2 1 6 6 N 1.46930 * 108.54108 * 54.85462 * 5 4 2 7 7 C 1.34773 * 120.62796 * 126.37455 * 6 5 4 8 8 O 1.21623 * 120.00111 * 184.86201 * 7 6 5 9 9 C 1.47169 * 120.00126 * 4.85185 * 7 6 5 10 10 C 1.38401 * 126.88536 * 260.14066 * 9 7 6 11 11 C 1.50693 * 127.32206 * 0.03110 * 10 9 7 12 12 C 1.53001 * 117.49747 * 188.72935 * 11 10 9 13 13 C 1.53006 * 117.49761 * 120.07316 * 11 10 9 14 14 C 1.39681 * 105.35656 * 179.97438 * 10 9 7 15 15 N 1.30864 * 107.86305 * 359.97438 * 14 10 9 16 16 N 1.28442 * 110.92587 * 0.02562 * 15 14 10 17 17 C 1.46498 * 125.18942 * 179.97438 * 16 15 14 18 18 C 1.46924 * 118.73910 * 306.09189 * 6 5 4 19 19 C 1.53037 * 109.46117 * 119.97479 * 2 1 3 20 20 H 1.09007 * 109.49641 * 61.42061 * 19 2 1 21 21 C 1.52999 * 109.52826 * 301.34053 * 19 2 1 22 22 N 1.46498 * 109.47336 * 175.14500 * 21 19 2 23 23 C 1.36931 * 119.99971 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99990 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00182 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99965 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00373 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46951 * 59.99874 * 27 25 23 29 29 H 1.48498 * 109.47495 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47499 * 300.00526 * 27 25 23 31 31 H 1.09004 * 109.47313 * 300.02425 * 1 2 3 32 32 H 1.09001 * 109.47449 * 60.02383 * 1 2 3 33 33 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49854 * 298.57172 * 4 2 1 35 35 H 1.09002 * 109.49922 * 58.64022 * 4 2 1 36 36 H 1.09004 * 109.73710 * 295.12183 * 5 4 2 37 37 H 1.08994 * 109.66715 * 174.54933 * 5 4 2 38 38 H 1.08998 * 115.55372 * 334.39921 * 11 10 9 39 39 H 1.08995 * 117.50041 * 0.02562 * 12 11 10 40 40 H 1.09004 * 117.49476 * 145.02170 * 12 11 10 41 41 H 1.08999 * 117.49444 * 214.98045 * 13 11 10 42 42 H 1.08999 * 117.49737 * 359.97438 * 13 11 10 43 43 H 1.07996 * 126.06612 * 180.02562 * 14 10 9 44 44 H 1.08999 * 109.47415 * 95.03973 * 17 16 15 45 45 H 1.09008 * 109.47306 * 215.03773 * 17 16 15 46 46 H 1.09002 * 109.46884 * 335.03230 * 17 16 15 47 47 H 1.09001 * 109.58376 * 173.64937 * 18 6 5 48 48 H 1.08995 * 109.59036 * 294.07659 * 18 6 5 49 49 H 1.09003 * 109.46753 * 295.14778 * 21 19 2 50 50 H 1.08997 * 109.46814 * 55.14390 * 21 19 2 51 51 H 0.97004 * 120.00081 * 359.97438 * 22 21 19 52 52 H 0.96993 * 120.00216 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7207 -1.2503 5 6 3.5752 -0.6851 -1.2646 6 7 4.0675 -1.2493 -0.0005 7 6 4.9616 -2.2578 -0.0007 8 8 5.2947 -2.7755 1.0482 9 6 5.5348 -2.7328 -1.2702 10 6 5.1480 -3.8500 -1.9898 11 6 4.0575 -4.8295 -1.6403 12 6 3.9511 -6.0998 -2.4864 13 6 2.9068 -4.9905 -2.6358 14 6 5.9825 -3.8759 -3.1096 15 7 6.7873 -2.8467 -3.0344 16 7 6.5545 -2.1588 -1.9750 17 6 7.2730 -0.9440 -1.5823 18 6 3.5714 -0.6890 1.2639 19 6 2.0398 -0.7209 1.2499 20 1 1.6975 -1.7558 1.2381 21 6 1.5031 -0.0198 2.4994 22 7 1.8953 -0.7769 3.6907 23 6 1.5246 -0.3379 4.9337 24 1 0.9435 0.5666 5.0358 25 6 1.8958 -1.0555 6.0624 26 7 2.6037 -2.1581 5.9380 27 14 1.3908 -0.4563 7.7581 28 1 -0.0908 -0.3977 7.8414 29 1 1.9073 -1.3929 8.7883 30 1 1.9536 0.8978 7.9927 31 1 -0.3634 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6972 -1.7555 -1.2385 35 1 1.6564 -0.2208 -2.1399 36 1 3.9187 0.3447 -1.3634 37 1 3.9481 -1.2785 -2.0994 38 1 3.8202 -4.9100 -0.5795 39 1 4.6701 -6.2272 -3.2956 40 1 3.6433 -7.0159 -1.9823 41 1 1.9126 -5.1773 -2.2299 42 1 2.9385 -4.3877 -3.5434 43 1 5.9659 -4.6137 -3.8980 44 1 6.7232 -0.0687 -1.9282 45 1 7.3637 -0.9104 -0.4965 46 1 8.2669 -0.9491 -2.0298 47 1 3.9417 -1.2852 2.0979 48 1 3.9144 0.3403 1.3670 49 1 1.9160 0.9873 2.5566 50 1 0.4158 0.0358 2.4460 51 1 2.4170 -1.5895 3.5990 52 1 2.8634 -2.6593 6.7267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132885181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:43 Heat of formation + Delta-G solvation = 79.209431 kcal Electronic energy + Delta-G solvation = -31935.019009 eV Core-core repulsion = 27937.325670 eV Total energy + Delta-G solvation = -3997.693339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.74071 -40.03724 -37.91899 -37.36739 -35.01240 -33.75276 -33.30746 -31.94591 -31.01989 -29.78417 -28.21820 -27.30116 -25.76458 -24.15184 -23.50513 -23.22038 -22.53191 -21.88821 -21.23821 -20.20844 -19.84394 -19.04165 -17.76776 -16.99603 -16.69875 -15.89537 -15.80894 -15.65129 -15.02811 -14.85872 -14.49787 -14.39961 -14.34894 -13.91848 -13.58260 -13.49240 -13.20546 -13.10512 -13.06996 -12.96350 -12.67418 -12.55494 -12.12235 -11.92246 -11.75553 -11.66608 -11.54362 -11.14607 -11.00469 -10.89750 -10.84120 -10.80678 -10.62726 -10.44971 -10.32745 -10.20016 -10.08393 -9.87167 -9.59122 -9.27813 -8.84256 -8.64810 -8.60227 -6.87504 -5.70491 -3.00400 1.48839 2.01995 2.43516 2.64899 3.03336 3.46647 3.50806 3.52518 3.84556 4.16363 4.27674 4.59247 4.64688 4.68983 4.74559 4.78404 4.81015 4.86366 4.91001 5.02678 5.08947 5.10328 5.14842 5.21749 5.34165 5.35853 5.50361 5.56836 5.61134 5.65730 5.68984 5.69918 5.78195 5.80693 5.90774 5.93072 5.98573 6.00684 6.12708 6.14343 6.20420 6.29944 6.32743 6.42964 6.50714 6.52089 6.61211 6.79796 6.87950 7.32575 7.73043 7.88538 8.06863 8.47123 9.58062 10.15980 10.50029 11.51633 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003019 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.278619 B = 9272.889913 C = 9630.396020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.109 3.891 6 N -0.598 5.598 7 C 0.586 3.414 8 O -0.508 6.508 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.083 4.083 12 C -0.169 4.169 13 C -0.168 4.168 14 C 0.007 3.993 15 N -0.285 5.285 16 N -0.275 5.275 17 C 0.087 3.913 18 C 0.119 3.881 19 C -0.101 4.101 20 H 0.075 0.925 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.183 0.817 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.018 0.982 50 H 0.028 0.972 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 0.985 -24.061 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.164 4.164 5 C -0.014 4.014 6 N -0.331 5.331 7 C 0.370 3.630 8 O -0.381 6.381 9 C -0.141 4.141 10 C -0.135 4.135 11 C -0.103 4.103 12 C -0.206 4.206 13 C -0.206 4.206 14 C -0.171 4.171 15 N -0.115 5.115 16 N -0.063 5.063 17 C -0.054 4.054 18 C -0.002 4.002 19 C -0.120 4.120 20 H 0.094 0.906 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.199 0.801 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.036 0.964 50 H 0.045 0.955 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.749 1.495 -23.831 24.345 hybrid contribution -0.677 -0.310 1.317 1.513 sum 4.072 1.185 -22.514 22.910 Atomic orbital electron populations 1.21874 0.94849 1.02032 1.01713 1.21095 0.96085 0.99272 0.93865 0.91114 1.22027 0.94044 1.01877 0.98423 1.21810 0.95216 0.98665 0.85726 1.48146 1.42456 1.34227 1.08267 1.17096 0.79730 0.79711 0.86467 1.90929 1.60630 1.54975 1.31560 1.21267 0.97001 0.98522 0.97312 1.19757 1.01028 0.96462 0.96208 1.20218 0.95820 0.96461 0.97766 1.22967 1.02348 0.92775 1.02544 1.23016 0.94361 1.02324 1.00865 1.23314 0.95695 0.98044 1.00039 1.73139 1.24914 1.07201 1.06287 1.45502 1.25061 1.20949 1.14825 1.22192 0.98037 0.82611 1.02527 1.21836 0.94148 0.99061 0.85128 1.21711 0.94168 1.00942 0.95221 0.90610 1.20717 0.96881 0.93999 0.85309 1.42408 1.65309 1.29265 1.00777 1.19143 1.28055 1.06443 0.83792 0.91321 1.24745 1.00788 0.97486 0.97770 1.69660 1.42174 1.17235 1.28660 0.86300 0.77988 0.77639 0.84415 1.21331 1.21706 1.21322 0.91596 0.93230 0.92710 0.91146 0.90905 0.91466 0.90331 0.86848 0.88600 0.88374 0.88431 0.88698 0.80052 0.89642 0.88899 0.88076 0.87591 0.91261 0.96429 0.95473 0.78113 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.81 37.15 0.33 -1.34 16 2 C -0.08 -0.99 2.23 -90.58 -0.20 -1.19 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.25 5.38 -26.38 -0.14 -1.39 16 5 C 0.11 1.12 6.35 -3.48 -0.02 1.10 16 6 N -0.60 -8.21 2.97 -173.87 -0.52 -8.73 16 7 C 0.59 9.29 6.88 -12.64 -0.09 9.20 16 8 O -0.51 -10.44 16.52 5.26 0.09 -10.36 16 9 C -0.01 -0.17 4.66 -82.06 -0.38 -0.55 16 10 C -0.12 -1.55 5.94 -104.03 -0.62 -2.17 16 11 C -0.08 -0.97 6.12 -91.77 -0.56 -1.53 16 12 C -0.17 -1.50 10.05 -26.69 -0.27 -1.77 16 13 C -0.17 -1.53 10.24 -26.69 -0.27 -1.80 16 14 C 0.01 0.07 11.41 -17.43 -0.20 -0.12 16 15 N -0.29 -3.45 11.90 30.59 0.36 -3.09 16 16 N -0.28 -3.26 3.75 -63.88 -0.24 -3.50 16 17 C 0.09 0.72 11.10 59.85 0.66 1.38 16 18 C 0.12 1.92 5.52 -3.71 -0.02 1.90 16 19 C -0.10 -1.58 1.92 -90.50 -0.17 -1.76 16 20 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 21 C 0.16 3.09 5.41 -4.04 -0.02 3.07 16 22 N -0.73 -18.57 5.38 -59.91 -0.32 -18.89 16 23 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 27 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.07 0.82 6.30 -51.93 -0.33 0.50 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.80 6.38 -51.93 -0.33 0.47 16 38 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.10 0.72 7.12 -51.93 -0.37 0.35 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.18 1.48 7.34 -52.49 -0.39 1.09 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.82 7.93 -51.92 -0.41 0.40 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.11 2.16 6.20 -51.93 -0.32 1.84 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 51 H 0.38 10.49 6.89 -40.82 -0.28 10.21 16 52 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 414.54 15.07 6.25 6.25 Total: -1.00 -34.48 414.54 -9.54 -44.02 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.63 Total: 9.09 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.23 Total: -4.40 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.01 Total: -62.25 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.48 -9.54 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132885181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.229 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds