Wall clock time and date at job start Wed Apr 1 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46252 * 2 1 4 4 C 1.53042 * 109.44611 * 240.03786 * 2 1 3 5 5 C 1.53627 * 109.24111 * 178.49678 * 4 2 1 6 6 N 1.46930 * 108.54108 * 54.85462 * 5 4 2 7 7 C 1.34773 * 120.62796 * 126.37455 * 6 5 4 8 8 O 1.21623 * 120.00111 * 184.86201 * 7 6 5 9 9 C 1.47169 * 120.00126 * 4.85185 * 7 6 5 10 10 C 1.38401 * 126.88536 * 260.14066 * 9 7 6 11 11 C 1.50693 * 127.32206 * 0.03110 * 10 9 7 12 12 C 1.53001 * 117.49747 * 188.72935 * 11 10 9 13 13 C 1.53006 * 117.49761 * 120.07316 * 11 10 9 14 14 C 1.39681 * 105.35656 * 179.97438 * 10 9 7 15 15 N 1.30864 * 107.86305 * 359.97438 * 14 10 9 16 16 N 1.28442 * 110.92587 * 0.02562 * 15 14 10 17 17 C 1.46498 * 125.18942 * 179.97438 * 16 15 14 18 18 C 1.46924 * 118.73910 * 306.09189 * 6 5 4 19 19 C 1.53037 * 109.46117 * 119.97479 * 2 1 3 20 20 H 1.09007 * 109.49641 * 61.42061 * 19 2 1 21 21 C 1.52999 * 109.52826 * 301.34053 * 19 2 1 22 22 N 1.46498 * 109.47336 * 175.14500 * 21 19 2 23 23 C 1.36931 * 119.99971 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99990 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00182 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99965 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00373 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46951 * 59.99874 * 27 25 23 29 29 H 1.48498 * 109.47495 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47499 * 300.00526 * 27 25 23 31 31 H 1.09004 * 109.47313 * 300.02425 * 1 2 3 32 32 H 1.09001 * 109.47449 * 60.02383 * 1 2 3 33 33 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49854 * 298.57172 * 4 2 1 35 35 H 1.09002 * 109.49922 * 58.64022 * 4 2 1 36 36 H 1.09004 * 109.73710 * 295.12183 * 5 4 2 37 37 H 1.08994 * 109.66715 * 174.54933 * 5 4 2 38 38 H 1.08998 * 115.55372 * 334.39921 * 11 10 9 39 39 H 1.08995 * 117.50041 * 0.02562 * 12 11 10 40 40 H 1.09004 * 117.49476 * 145.02170 * 12 11 10 41 41 H 1.08999 * 117.49444 * 214.98045 * 13 11 10 42 42 H 1.08999 * 117.49737 * 359.97438 * 13 11 10 43 43 H 1.07996 * 126.06612 * 180.02562 * 14 10 9 44 44 H 1.08999 * 109.47415 * 95.03973 * 17 16 15 45 45 H 1.09008 * 109.47306 * 215.03773 * 17 16 15 46 46 H 1.09002 * 109.46884 * 335.03230 * 17 16 15 47 47 H 1.09001 * 109.58376 * 173.64937 * 18 6 5 48 48 H 1.08995 * 109.59036 * 294.07659 * 18 6 5 49 49 H 1.09003 * 109.46753 * 295.14778 * 21 19 2 50 50 H 1.08997 * 109.46814 * 55.14390 * 21 19 2 51 51 H 0.97004 * 120.00081 * 359.97438 * 22 21 19 52 52 H 0.96993 * 120.00216 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7207 -1.2503 5 6 3.5752 -0.6851 -1.2646 6 7 4.0675 -1.2493 -0.0005 7 6 4.9616 -2.2578 -0.0007 8 8 5.2947 -2.7755 1.0482 9 6 5.5348 -2.7328 -1.2702 10 6 5.1480 -3.8500 -1.9898 11 6 4.0575 -4.8295 -1.6403 12 6 3.9511 -6.0998 -2.4864 13 6 2.9068 -4.9905 -2.6358 14 6 5.9825 -3.8759 -3.1096 15 7 6.7873 -2.8467 -3.0344 16 7 6.5545 -2.1588 -1.9750 17 6 7.2730 -0.9440 -1.5823 18 6 3.5714 -0.6890 1.2639 19 6 2.0398 -0.7209 1.2499 20 1 1.6975 -1.7558 1.2381 21 6 1.5031 -0.0198 2.4994 22 7 1.8953 -0.7769 3.6907 23 6 1.5246 -0.3379 4.9337 24 1 0.9435 0.5666 5.0358 25 6 1.8958 -1.0555 6.0624 26 7 2.6037 -2.1581 5.9380 27 14 1.3908 -0.4563 7.7581 28 1 -0.0908 -0.3977 7.8414 29 1 1.9073 -1.3929 8.7883 30 1 1.9536 0.8978 7.9927 31 1 -0.3634 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6972 -1.7555 -1.2385 35 1 1.6564 -0.2208 -2.1399 36 1 3.9187 0.3447 -1.3634 37 1 3.9481 -1.2785 -2.0994 38 1 3.8202 -4.9100 -0.5795 39 1 4.6701 -6.2272 -3.2956 40 1 3.6433 -7.0159 -1.9823 41 1 1.9126 -5.1773 -2.2299 42 1 2.9385 -4.3877 -3.5434 43 1 5.9659 -4.6137 -3.8980 44 1 6.7232 -0.0687 -1.9282 45 1 7.3637 -0.9104 -0.4965 46 1 8.2669 -0.9491 -2.0298 47 1 3.9417 -1.2852 2.0979 48 1 3.9144 0.3403 1.3670 49 1 1.9160 0.9873 2.5566 50 1 0.4158 0.0358 2.4460 51 1 2.4170 -1.5895 3.5990 52 1 2.8634 -2.6593 6.7267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132885181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:41 Heat of formation + Delta-G solvation = 57.502459 kcal Electronic energy + Delta-G solvation = -31935.960294 eV Core-core repulsion = 27937.325670 eV Total energy + Delta-G solvation = -3998.634624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.65297 -41.23112 -39.20259 -38.16606 -36.65421 -35.16940 -34.11254 -33.55599 -32.16749 -31.32003 -29.29029 -28.09850 -27.38451 -25.35691 -24.84191 -24.41245 -23.28519 -22.88985 -22.61928 -21.14438 -20.97903 -20.05960 -19.17756 -18.69970 -17.80699 -16.85912 -16.81551 -16.74203 -16.57090 -16.11764 -15.62048 -15.57028 -15.42363 -15.17606 -15.12892 -14.57216 -14.45876 -14.24383 -14.08718 -14.05454 -13.86706 -13.66306 -13.13907 -13.05300 -12.98673 -12.76981 -12.68998 -12.63431 -12.33466 -12.23198 -12.06895 -11.99636 -11.91717 -11.81350 -11.70218 -11.44410 -11.27105 -11.24457 -11.12084 -10.91281 -10.17982 -9.81396 -9.53529 -8.99297 -7.93862 -5.24169 0.51385 0.99762 1.45061 1.48998 1.54366 1.55355 1.58258 1.98309 2.55655 3.05335 3.22555 3.38999 3.39266 3.64229 3.75864 3.81621 3.88566 3.95901 3.97633 4.09389 4.18772 4.19865 4.23046 4.27642 4.29514 4.36573 4.45487 4.49699 4.51022 4.57184 4.71281 4.76743 4.79095 4.81513 4.89358 4.90299 4.94586 5.05505 5.05837 5.12008 5.22863 5.23524 5.26268 5.30685 5.36596 5.44608 5.48287 5.48672 5.57273 5.70989 6.16833 6.26362 6.85376 6.99620 7.32005 8.09115 8.30740 9.29346 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003019 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.278619 B = 9272.889913 C = 9630.396020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 H 0.089 0.911 4 C -0.118 4.118 5 C 0.106 3.894 6 N -0.588 5.588 7 C 0.588 3.412 8 O -0.573 6.573 9 C -0.036 4.036 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.154 4.154 13 C -0.152 4.152 14 C 0.010 3.990 15 N -0.289 5.289 16 N -0.273 5.273 17 C 0.078 3.922 18 C 0.127 3.873 19 C -0.087 4.087 20 H 0.048 0.952 21 C 0.158 3.842 22 N -0.748 5.748 23 C -0.245 4.245 24 H 0.080 0.920 25 C -0.078 4.078 26 N -0.972 5.972 27 Si 0.975 3.025 28 H -0.275 1.275 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.214 0.786 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.027 0.973 50 H 0.034 0.966 51 H 0.369 0.631 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 2.799 -27.533 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.107 0.893 4 C -0.156 4.156 5 C -0.015 4.015 6 N -0.319 5.319 7 C 0.373 3.627 8 O -0.451 6.451 9 C -0.165 4.165 10 C -0.136 4.136 11 C -0.135 4.135 12 C -0.190 4.190 13 C -0.189 4.189 14 C -0.167 4.167 15 N -0.119 5.119 16 N -0.062 5.062 17 C -0.061 4.061 18 C 0.004 3.996 19 C -0.107 4.107 20 H 0.067 0.933 21 C 0.031 3.969 22 N -0.391 5.391 23 C -0.377 4.377 24 H 0.098 0.902 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.804 3.196 28 H -0.201 1.201 29 H -0.225 1.225 30 H -0.201 1.201 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.230 0.770 44 H 0.129 0.871 45 H 0.098 0.902 46 H 0.138 0.862 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.045 0.955 50 H 0.052 0.948 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.878 3.384 -27.372 27.852 hybrid contribution -0.443 -0.852 2.336 2.526 sum 3.435 2.532 -25.036 25.397 Atomic orbital electron populations 1.21848 0.94173 1.01687 1.02502 1.21080 0.96553 0.99698 0.92199 0.89305 1.22007 0.93455 1.01385 0.98747 1.22122 0.95570 1.00026 0.83788 1.48170 1.41490 1.33419 1.08844 1.17455 0.79428 0.79227 0.86552 1.90891 1.62904 1.57205 1.34067 1.20983 0.98681 0.99891 0.96912 1.19967 1.01225 0.95836 0.96537 1.20114 0.97825 0.98991 0.96538 1.23105 1.02250 0.91868 1.01807 1.23076 0.93693 1.02043 1.00054 1.23762 0.94581 0.98245 1.00130 1.73140 1.24932 1.07563 1.06284 1.45761 1.24481 1.21514 1.14406 1.22475 0.99284 0.82321 1.02068 1.21545 0.94439 0.98682 0.84908 1.21555 0.93633 0.99579 0.95926 0.93350 1.20917 0.97227 0.93937 0.84802 1.42676 1.65120 1.29269 1.02013 1.19632 1.26831 1.06267 0.84987 0.90225 1.25633 1.01589 0.97933 1.01876 1.69863 1.44295 1.18954 1.29179 0.85188 0.77987 0.77159 0.79284 1.20127 1.22482 1.20126 0.93017 0.90180 0.93672 0.92400 0.87128 0.88618 0.89581 0.90627 0.86460 0.88059 0.88349 0.87057 0.76971 0.87125 0.90173 0.86165 0.92800 0.89845 0.95520 0.94825 0.79896 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.81 71.98 0.63 -2.30 16 2 C -0.08 -1.63 2.23 -10.77 -0.02 -1.65 16 3 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 4 C -0.12 -2.00 5.38 30.82 0.17 -1.83 16 5 C 0.11 1.94 6.35 86.51 0.55 2.49 16 6 N -0.59 -16.51 2.97 -822.24 -2.44 -18.95 16 7 C 0.59 19.84 6.88 86.59 0.60 20.43 16 8 O -0.57 -26.05 16.52 -4.10 -0.07 -26.12 16 9 C -0.04 -1.00 4.66 40.79 0.19 -0.81 16 10 C -0.12 -3.08 5.94 -19.48 -0.12 -3.19 16 11 C -0.12 -2.72 6.12 -11.54 -0.07 -2.79 16 12 C -0.15 -2.49 10.05 30.62 0.31 -2.18 16 13 C -0.15 -2.52 10.24 30.62 0.31 -2.20 16 14 C 0.01 0.19 11.41 85.19 0.97 1.17 16 15 N -0.29 -6.41 11.90 -57.14 -0.68 -7.09 16 16 N -0.27 -6.19 3.75 -356.01 -1.33 -7.52 16 17 C 0.08 1.20 11.10 127.77 1.42 2.61 16 18 C 0.13 4.28 5.52 86.36 0.48 4.75 16 19 C -0.09 -2.80 1.92 -10.72 -0.02 -2.82 16 20 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 21 C 0.16 6.21 5.41 86.38 0.47 6.68 16 22 N -0.75 -39.54 5.38 -343.47 -1.85 -41.39 16 23 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 24 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 25 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 26 N -0.97 -63.02 13.06 21.65 0.28 -62.74 16 27 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 30 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 31 H 0.05 1.20 6.30 -2.38 -0.02 1.18 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.09 1.54 6.38 -2.39 -0.02 1.52 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.12 1.40 7.12 -2.39 -0.02 1.38 16 40 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.21 2.69 7.34 -2.91 -0.02 2.67 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.44 7.93 -2.38 -0.02 1.42 16 46 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 2.42 6.20 -2.39 -0.01 2.41 16 48 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.03 1.31 6.15 -2.39 -0.01 1.30 16 51 H 0.37 21.61 6.89 -92.71 -0.64 20.97 16 52 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.86 414.54 3.39 -77.47 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.28 Total: 35.88 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 7.17 Total: 0.89 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -6.02 Total: -137.69 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -80.86 3.39 -77.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132885181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.970 kcal (2) G-P(sol) polarization free energy of solvation -80.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds