Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46181 * 2 1 4 4 C 1.53036 * 109.45065 * 240.03012 * 2 1 3 5 5 C 1.52756 * 109.38431 * 301.23226 * 4 2 1 6 6 N 1.46930 * 109.00796 * 305.58287 * 5 4 2 7 7 C 1.34775 * 120.63063 * 233.58759 * 6 5 4 8 8 O 1.21603 * 120.00334 * 5.18906 * 7 6 5 9 9 C 1.47430 * 119.99446 * 185.18749 * 7 6 5 10 10 C 1.41470 * 126.48980 * 39.73744 * 9 7 6 11 11 N 1.30608 * 108.06965 * 179.97438 * 10 9 7 12 12 N 1.39617 * 108.87416 * 359.97438 * 11 10 9 13 13 C 1.34596 * 108.34488 * 0.03703 * 12 11 10 14 14 C 1.50800 * 124.58002 * 179.91826 * 13 12 11 15 15 C 1.53454 * 108.19733 * 344.31688 * 14 13 12 16 16 C 1.53161 * 109.10999 * 48.36070 * 15 14 13 17 17 C 1.46691 * 127.23010 * 180.02562 * 12 11 10 18 18 C 1.46928 * 118.73645 * 53.30998 * 6 5 4 19 19 C 1.53046 * 109.45939 * 119.97150 * 2 1 3 20 20 H 1.08991 * 109.49813 * 178.59601 * 19 2 1 21 21 C 1.53003 * 109.49619 * 298.69246 * 19 2 1 22 22 N 1.46504 * 109.46841 * 184.83956 * 21 19 2 23 23 C 1.36940 * 119.99553 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00179 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99658 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99933 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99980 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47114 * 90.00403 * 27 25 23 29 29 H 1.48500 * 109.47279 * 210.00121 * 27 25 23 30 30 H 1.48501 * 109.46810 * 330.00040 * 27 25 23 31 31 H 1.09001 * 109.47229 * 300.02593 * 1 2 3 32 32 H 1.09000 * 109.47271 * 60.02477 * 1 2 3 33 33 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.49280 * 61.30559 * 4 2 1 35 35 H 1.09000 * 109.49995 * 181.36330 * 4 2 1 36 36 H 1.09004 * 109.51181 * 185.70851 * 5 4 2 37 37 H 1.09000 * 109.43492 * 65.41923 * 5 4 2 38 38 H 1.07996 * 125.96284 * 0.22884 * 10 9 7 39 39 H 1.08998 * 109.71977 * 224.64121 * 14 13 12 40 40 H 1.09004 * 109.71661 * 103.99488 * 14 13 12 41 41 H 1.08997 * 109.52978 * 288.47477 * 15 14 13 42 42 H 1.08997 * 109.59008 * 168.28825 * 15 14 13 43 43 H 1.08999 * 109.45914 * 170.73866 * 16 15 14 44 44 H 1.09001 * 109.45688 * 50.78924 * 16 15 14 45 45 H 1.09001 * 109.57389 * 282.41341 * 17 12 11 46 46 H 1.09004 * 109.57064 * 42.78808 * 17 12 11 47 47 H 1.09000 * 109.58459 * 66.43529 * 18 6 5 48 48 H 1.08995 * 109.58986 * 186.71506 * 18 6 5 49 49 H 1.09006 * 109.47154 * 304.83517 * 21 19 2 50 50 H 1.08997 * 109.47238 * 64.83490 * 21 19 2 51 51 H 0.96992 * 120.00104 * 359.97438 * 22 21 19 52 52 H 0.96999 * 120.00001 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5039 -2.1513 -1.2642 6 7 1.8619 -2.8090 0.0000 7 6 2.5156 -3.9876 -0.0002 8 8 2.8980 -4.4707 -1.0485 9 6 2.7670 -4.6911 1.2708 10 6 1.8738 -4.8013 2.3624 11 7 2.4610 -5.4987 3.2975 12 7 3.7351 -5.8623 2.8571 13 6 3.9134 -5.3647 1.6193 14 6 5.1666 -5.5396 0.7989 15 6 6.2903 -6.0063 1.7340 16 6 5.7789 -7.1676 2.5917 17 6 4.7354 -6.6490 3.5868 18 6 1.4992 -2.1542 1.2643 19 6 2.0399 -0.7209 1.2501 20 1 3.1295 -0.7431 1.2382 21 6 1.5571 0.0193 2.4990 22 7 2.1395 -0.6024 3.6909 23 6 1.8485 -0.1061 4.9336 24 1 1.1893 0.7433 5.0350 25 6 2.4000 -0.6956 6.0629 26 7 3.2029 -1.7312 5.9392 27 14 2.0025 -0.0191 7.7581 28 1 0.7980 -0.7026 8.2939 29 1 3.1520 -0.2565 8.6678 30 1 1.7417 1.4395 7.6602 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6955 -0.1934 -2.1398 35 1 3.1293 -0.7425 -1.2388 36 1 1.9457 -2.6973 -2.0979 37 1 0.4194 -2.1314 -1.3714 38 1 0.8784 -4.3852 2.4119 39 1 5.4410 -4.5899 0.3397 40 1 4.9977 -6.2880 0.0246 41 1 6.5929 -5.1821 2.3798 42 1 7.1436 -6.3382 1.1426 43 1 6.6121 -7.6104 3.1374 44 1 5.3248 -7.9215 1.9486 45 1 5.2220 -6.0199 4.3321 46 1 4.2494 -7.4916 4.0786 47 1 0.4143 -2.1346 1.3675 48 1 1.9357 -2.7033 2.0985 49 1 1.8671 1.0630 2.4454 50 1 0.4699 -0.0343 2.5557 51 1 2.7312 -1.3655 3.5997 52 1 3.5886 -2.1428 6.7283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133221185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = 42.936169 kcal Electronic energy + Delta-G solvation = -32529.625095 eV Core-core repulsion = 28530.358829 eV Total energy + Delta-G solvation = -3999.266266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.52767 -39.91150 -37.79121 -36.53420 -34.70225 -33.48308 -32.49876 -31.85097 -30.32726 -29.89092 -28.50927 -27.40168 -25.44647 -24.75834 -24.31252 -23.26445 -22.39890 -21.70898 -20.95479 -19.74107 -18.86583 -18.02169 -17.18219 -16.88977 -16.12420 -15.60742 -15.43186 -14.98118 -14.83924 -14.76361 -14.51670 -14.37408 -14.16930 -14.00498 -13.79724 -13.54092 -13.40231 -13.09768 -12.83082 -12.62396 -12.41024 -12.33533 -11.95546 -11.70962 -11.57694 -11.38029 -11.22469 -11.19223 -11.12512 -10.96004 -10.86988 -10.78189 -10.55044 -10.49552 -10.26923 -10.15298 -9.87993 -9.60771 -9.51075 -9.03513 -8.83372 -8.42594 -8.17333 -6.87628 -5.71911 -3.00693 1.84633 2.53093 2.54962 3.21234 3.45131 3.50392 3.51610 3.59282 4.31101 4.47549 4.57050 4.60374 4.61175 4.82218 4.93342 5.00686 5.03710 5.14027 5.23348 5.26823 5.29770 5.41365 5.46837 5.47780 5.55826 5.60120 5.61894 5.65141 5.67506 5.74339 5.77851 5.80378 5.83584 5.88133 5.98171 6.01440 6.06360 6.09535 6.13492 6.20010 6.37802 6.39882 6.42035 6.55978 6.67750 6.77604 6.85764 6.93798 7.07144 7.69075 7.73544 7.90264 8.45378 8.49745 9.57044 10.14827 10.49270 11.49877 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.005244 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3902.934342 B = 5337.928338 C = 8517.452742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.113 3.887 6 N -0.605 5.605 7 C 0.603 3.397 8 O -0.557 6.557 9 C -0.291 4.291 10 C 0.086 3.914 11 N -0.277 5.277 12 N -0.355 5.355 13 C 0.146 3.854 14 C -0.057 4.057 15 C -0.130 4.130 16 C -0.136 4.136 17 C 0.130 3.870 18 C 0.110 3.890 19 C -0.102 4.102 20 H 0.072 0.928 21 C 0.160 3.840 22 N -0.732 5.732 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.927 5.927 27 Si 0.903 3.097 28 H -0.290 1.290 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.186 0.814 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.020 0.980 50 H 0.024 0.976 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -7.426 -13.513 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.010 4.010 6 N -0.337 5.337 7 C 0.392 3.608 8 O -0.437 6.437 9 C -0.306 4.306 10 C -0.102 4.102 11 N -0.095 5.095 12 N -0.135 5.135 13 C 0.014 3.986 14 C -0.095 4.095 15 C -0.167 4.167 16 C -0.174 4.174 17 C 0.009 3.991 18 C -0.013 4.013 19 C -0.121 4.121 20 H 0.090 0.910 21 C 0.032 3.968 22 N -0.376 5.376 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.575 5.575 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.203 0.797 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.038 0.962 50 H 0.042 0.958 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.344 -8.177 -12.624 15.222 hybrid contribution -0.048 0.689 0.487 0.845 sum 2.296 -7.487 -12.137 14.444 Atomic orbital electron populations 1.21984 0.95266 1.02004 1.01698 1.21071 0.95983 0.99282 0.94024 0.90997 1.21856 1.01167 0.95382 0.98177 1.21473 0.99671 0.92995 0.86820 1.47956 1.57649 1.20541 1.07546 1.17298 0.76360 0.79768 0.87354 1.90695 1.52572 1.67300 1.33115 1.19632 0.97436 1.14715 0.98825 1.24029 0.99952 0.96675 0.89521 1.77213 0.90941 1.19231 1.22083 1.48477 1.12494 1.40907 1.11641 1.21170 0.96370 0.94030 0.86990 1.20469 0.88855 1.03810 0.96413 1.21739 0.98066 0.98441 0.98469 1.21970 0.98427 0.98763 0.98267 1.21890 0.87264 0.95265 0.94693 1.22079 1.00091 0.93559 0.85545 1.21674 1.00777 0.94464 0.95209 0.90977 1.20700 0.96022 0.94772 0.85342 1.42386 1.57035 1.37419 1.00795 1.19178 1.23289 1.10868 0.83751 0.91320 1.24706 1.00081 0.98305 0.97617 1.69669 1.35560 1.24034 1.28244 0.86251 0.77239 0.78224 0.84832 1.21771 1.21934 1.20865 0.91870 0.93182 0.92378 0.91034 0.91685 0.89397 0.91571 0.79675 0.88893 0.88712 0.90738 0.90139 0.88958 0.90661 0.89108 0.88807 0.91345 0.88000 0.96203 0.95840 0.78347 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.11 37.16 0.30 -1.46 16 2 C -0.08 -1.08 2.71 -90.58 -0.25 -1.32 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.48 5.61 -26.84 -0.15 -1.63 16 5 C 0.11 1.43 5.95 -3.93 -0.02 1.40 16 6 N -0.60 -9.08 2.98 -174.30 -0.52 -9.60 16 7 C 0.60 10.18 7.47 -12.52 -0.09 10.08 16 8 O -0.56 -10.30 16.13 5.28 0.09 -10.22 16 9 C -0.29 -4.95 5.21 -105.21 -0.55 -5.50 16 10 C 0.09 1.51 9.62 -16.84 -0.16 1.34 16 11 N -0.28 -5.17 12.54 30.93 0.39 -4.78 16 12 N -0.36 -5.65 4.01 -56.39 -0.23 -5.87 16 13 C 0.15 2.29 6.65 -81.62 -0.54 1.75 16 14 C -0.06 -0.69 5.78 -27.60 -0.16 -0.85 16 15 C -0.13 -1.22 5.98 -26.41 -0.16 -1.37 16 16 C -0.14 -1.15 5.93 -26.53 -0.16 -1.31 16 17 C 0.13 1.52 7.27 -3.82 -0.03 1.49 16 18 C 0.11 1.73 4.09 -3.71 -0.02 1.72 16 19 C -0.10 -1.63 2.15 -90.50 -0.19 -1.83 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C 0.16 3.11 5.19 -4.04 -0.02 3.09 16 22 N -0.73 -18.14 5.38 -59.90 -0.32 -18.46 16 23 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 27 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.68 4.99 -51.93 -0.26 0.42 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.17 6.99 -51.93 -0.36 0.80 16 37 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 38 H 0.19 2.92 7.33 -52.49 -0.38 2.54 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 1.03 6.69 -51.93 -0.35 0.68 16 48 H 0.10 1.88 3.95 -51.93 -0.20 1.67 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 51 H 0.38 10.12 6.89 -40.82 -0.28 9.83 16 52 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -33.74 395.11 -9.72 -43.46 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.34 Total: 10.73 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.44 Total: -1.59 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.05 Total: -65.78 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.74 -9.72 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133221185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.400 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds