Wall clock time and date at job start Wed Apr 1 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46181 * 2 1 4 4 C 1.53036 * 109.45065 * 240.03012 * 2 1 3 5 5 C 1.52756 * 109.38431 * 301.23226 * 4 2 1 6 6 N 1.46930 * 109.00796 * 305.58287 * 5 4 2 7 7 C 1.34775 * 120.63063 * 233.58759 * 6 5 4 8 8 O 1.21603 * 120.00334 * 5.18906 * 7 6 5 9 9 C 1.47430 * 119.99446 * 185.18749 * 7 6 5 10 10 C 1.41470 * 126.48980 * 39.73744 * 9 7 6 11 11 N 1.30608 * 108.06965 * 179.97438 * 10 9 7 12 12 N 1.39617 * 108.87416 * 359.97438 * 11 10 9 13 13 C 1.34596 * 108.34488 * 0.03703 * 12 11 10 14 14 C 1.50800 * 124.58002 * 179.91826 * 13 12 11 15 15 C 1.53454 * 108.19733 * 344.31688 * 14 13 12 16 16 C 1.53161 * 109.10999 * 48.36070 * 15 14 13 17 17 C 1.46691 * 127.23010 * 180.02562 * 12 11 10 18 18 C 1.46928 * 118.73645 * 53.30998 * 6 5 4 19 19 C 1.53046 * 109.45939 * 119.97150 * 2 1 3 20 20 H 1.08991 * 109.49813 * 178.59601 * 19 2 1 21 21 C 1.53003 * 109.49619 * 298.69246 * 19 2 1 22 22 N 1.46504 * 109.46841 * 184.83956 * 21 19 2 23 23 C 1.36940 * 119.99553 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00179 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99658 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99933 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99980 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47114 * 90.00403 * 27 25 23 29 29 H 1.48500 * 109.47279 * 210.00121 * 27 25 23 30 30 H 1.48501 * 109.46810 * 330.00040 * 27 25 23 31 31 H 1.09001 * 109.47229 * 300.02593 * 1 2 3 32 32 H 1.09000 * 109.47271 * 60.02477 * 1 2 3 33 33 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.49280 * 61.30559 * 4 2 1 35 35 H 1.09000 * 109.49995 * 181.36330 * 4 2 1 36 36 H 1.09004 * 109.51181 * 185.70851 * 5 4 2 37 37 H 1.09000 * 109.43492 * 65.41923 * 5 4 2 38 38 H 1.07996 * 125.96284 * 0.22884 * 10 9 7 39 39 H 1.08998 * 109.71977 * 224.64121 * 14 13 12 40 40 H 1.09004 * 109.71661 * 103.99488 * 14 13 12 41 41 H 1.08997 * 109.52978 * 288.47477 * 15 14 13 42 42 H 1.08997 * 109.59008 * 168.28825 * 15 14 13 43 43 H 1.08999 * 109.45914 * 170.73866 * 16 15 14 44 44 H 1.09001 * 109.45688 * 50.78924 * 16 15 14 45 45 H 1.09001 * 109.57389 * 282.41341 * 17 12 11 46 46 H 1.09004 * 109.57064 * 42.78808 * 17 12 11 47 47 H 1.09000 * 109.58459 * 66.43529 * 18 6 5 48 48 H 1.08995 * 109.58986 * 186.71506 * 18 6 5 49 49 H 1.09006 * 109.47154 * 304.83517 * 21 19 2 50 50 H 1.08997 * 109.47238 * 64.83490 * 21 19 2 51 51 H 0.96992 * 120.00104 * 359.97438 * 22 21 19 52 52 H 0.96999 * 120.00001 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5039 -2.1513 -1.2642 6 7 1.8619 -2.8090 0.0000 7 6 2.5156 -3.9876 -0.0002 8 8 2.8980 -4.4707 -1.0485 9 6 2.7670 -4.6911 1.2708 10 6 1.8738 -4.8013 2.3624 11 7 2.4610 -5.4987 3.2975 12 7 3.7351 -5.8623 2.8571 13 6 3.9134 -5.3647 1.6193 14 6 5.1666 -5.5396 0.7989 15 6 6.2903 -6.0063 1.7340 16 6 5.7789 -7.1676 2.5917 17 6 4.7354 -6.6490 3.5868 18 6 1.4992 -2.1542 1.2643 19 6 2.0399 -0.7209 1.2501 20 1 3.1295 -0.7431 1.2382 21 6 1.5571 0.0193 2.4990 22 7 2.1395 -0.6024 3.6909 23 6 1.8485 -0.1061 4.9336 24 1 1.1893 0.7433 5.0350 25 6 2.4000 -0.6956 6.0629 26 7 3.2029 -1.7312 5.9392 27 14 2.0025 -0.0191 7.7581 28 1 0.7980 -0.7026 8.2939 29 1 3.1520 -0.2565 8.6678 30 1 1.7417 1.4395 7.6602 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6955 -0.1934 -2.1398 35 1 3.1293 -0.7425 -1.2388 36 1 1.9457 -2.6973 -2.0979 37 1 0.4194 -2.1314 -1.3714 38 1 0.8784 -4.3852 2.4119 39 1 5.4410 -4.5899 0.3397 40 1 4.9977 -6.2880 0.0246 41 1 6.5929 -5.1821 2.3798 42 1 7.1436 -6.3382 1.1426 43 1 6.6121 -7.6104 3.1374 44 1 5.3248 -7.9215 1.9486 45 1 5.2220 -6.0199 4.3321 46 1 4.2494 -7.4916 4.0786 47 1 0.4143 -2.1346 1.3675 48 1 1.9357 -2.7033 2.0985 49 1 1.8671 1.0630 2.4454 50 1 0.4699 -0.0343 2.5557 51 1 2.7312 -1.3655 3.5997 52 1 3.5886 -2.1428 6.7283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133221185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:03 Heat of formation + Delta-G solvation = 21.846451 kcal Electronic energy + Delta-G solvation = -32530.539614 eV Core-core repulsion = 28530.358829 eV Total energy + Delta-G solvation = -4000.180785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.74876 -41.13143 -39.10206 -37.50466 -36.46610 -34.76407 -33.82746 -33.30567 -31.57224 -31.38825 -29.71029 -28.51166 -27.09982 -25.91069 -25.30987 -24.92443 -23.58366 -22.95220 -22.29650 -20.98625 -19.94779 -19.35669 -18.85476 -18.30206 -17.35942 -16.76264 -16.70529 -16.56754 -16.06750 -16.00615 -15.66737 -15.55216 -15.32888 -15.26166 -15.03773 -14.87531 -14.73161 -14.49057 -14.23910 -13.93737 -13.73487 -13.46820 -13.05639 -13.01606 -12.84226 -12.78327 -12.63675 -12.45252 -12.30114 -12.11116 -12.01071 -11.99100 -11.95459 -11.87741 -11.68005 -11.63667 -11.31530 -11.16610 -10.91815 -10.80951 -10.28507 -9.69549 -9.40307 -8.94234 -7.90276 -5.18751 0.61209 1.20802 1.42501 1.46436 1.47837 1.55733 1.95803 2.31963 2.57201 3.35506 3.43036 3.46870 3.66887 3.72250 3.73101 3.76339 3.88554 3.95581 4.07304 4.13427 4.20365 4.27689 4.31572 4.35309 4.38158 4.46033 4.55498 4.59708 4.65461 4.66753 4.77970 4.79281 4.84017 4.87062 4.93468 4.95295 4.97483 5.01549 5.05313 5.15304 5.19364 5.23582 5.25402 5.33103 5.40709 5.43536 5.53144 5.62559 5.66927 5.95182 6.29215 6.39667 6.61226 7.20088 7.36605 8.12893 8.35648 9.31661 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.005244 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3902.934342 B = 5337.928338 C = 8517.452742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.119 4.119 5 C 0.109 3.891 6 N -0.599 5.599 7 C 0.602 3.398 8 O -0.577 6.577 9 C -0.315 4.315 10 C 0.081 3.919 11 N -0.320 5.320 12 N -0.356 5.356 13 C 0.143 3.857 14 C -0.056 4.056 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.115 3.885 18 C 0.120 3.880 19 C -0.091 4.091 20 H 0.049 0.951 21 C 0.161 3.839 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.075 0.925 25 C -0.071 4.071 26 N -0.960 5.960 27 Si 0.966 3.034 28 H -0.289 1.289 29 H -0.299 1.299 30 H -0.269 1.269 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.191 0.809 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.020 0.980 50 H 0.034 0.966 51 H 0.371 0.629 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -6.932 -14.928 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.157 4.157 5 C -0.013 4.013 6 N -0.331 5.331 7 C 0.391 3.609 8 O -0.458 6.458 9 C -0.330 4.330 10 C -0.106 4.106 11 N -0.139 5.139 12 N -0.136 5.136 13 C 0.010 3.990 14 C -0.095 4.095 15 C -0.162 4.162 16 C -0.163 4.163 17 C -0.004 4.004 18 C -0.003 4.003 19 C -0.111 4.111 20 H 0.067 0.933 21 C 0.034 3.966 22 N -0.386 5.386 23 C -0.374 4.374 24 H 0.093 0.907 25 C -0.264 4.264 26 N -0.611 5.611 27 Si 0.796 3.204 28 H -0.217 1.217 29 H -0.226 1.226 30 H -0.194 1.194 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.208 0.792 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.038 0.962 50 H 0.051 0.949 51 H 0.203 0.797 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.240 -7.638 -14.061 16.158 hybrid contribution -0.039 0.575 0.895 1.065 sum 2.201 -7.062 -13.166 15.102 Atomic orbital electron populations 1.21954 0.93860 1.02222 1.02545 1.21050 0.97037 0.99175 0.92512 0.90311 1.21818 1.00427 0.94669 0.98776 1.21709 1.00982 0.93313 0.85265 1.47960 1.56929 1.20012 1.08161 1.17315 0.76381 0.80189 0.86992 1.90667 1.53627 1.67958 1.33554 1.19857 0.98158 1.15902 0.99077 1.24157 1.00358 0.96462 0.89660 1.77091 0.92845 1.20652 1.23307 1.48820 1.12103 1.40772 1.11918 1.21785 0.97177 0.92889 0.87110 1.20607 0.88275 1.03817 0.96759 1.21756 0.97905 0.98375 0.98167 1.21996 0.98275 0.98322 0.97661 1.22322 0.87379 0.95073 0.95639 1.21863 1.00294 0.93010 0.85162 1.21538 0.99327 0.94684 0.95531 0.93272 1.20842 0.96159 0.94661 0.84908 1.42588 1.57040 1.37232 1.01716 1.19572 1.22335 1.10466 0.84981 0.90694 1.25474 1.00702 0.99013 1.01169 1.69842 1.37111 1.25566 1.28572 0.85245 0.76529 0.78194 0.80423 1.21657 1.22551 1.19423 0.92868 0.90542 0.92445 0.87699 0.92870 0.89793 0.89490 0.79249 0.89764 0.87648 0.92091 0.86928 0.85560 0.89858 0.89915 0.87694 0.90293 0.90831 0.96215 0.94861 0.79729 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.11 71.98 0.58 -2.42 16 2 C -0.08 -1.84 2.71 -10.77 -0.03 -1.87 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.12 -2.45 5.61 30.53 0.17 -2.28 16 5 C 0.11 2.55 5.95 86.22 0.51 3.06 16 6 N -0.60 -17.91 2.98 -823.61 -2.45 -20.36 16 7 C 0.60 20.70 7.47 86.66 0.65 21.35 16 8 O -0.58 -21.43 16.13 -4.04 -0.07 -21.49 16 9 C -0.32 -11.18 5.21 -20.24 -0.11 -11.29 16 10 C 0.08 3.00 9.62 85.67 0.82 3.82 16 11 N -0.32 -12.63 12.54 -56.07 -0.70 -13.33 16 12 N -0.36 -11.73 4.01 -332.32 -1.33 -13.06 16 13 C 0.14 4.63 6.65 41.98 0.28 4.91 16 14 C -0.06 -1.35 5.78 30.03 0.17 -1.17 16 15 C -0.12 -2.15 5.98 30.80 0.18 -1.96 16 16 C -0.12 -1.87 5.93 30.73 0.18 -1.69 16 17 C 0.12 2.70 7.27 86.42 0.63 3.33 16 18 C 0.12 3.83 4.09 86.36 0.35 4.18 16 19 C -0.09 -2.91 2.15 -10.71 -0.02 -2.93 16 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.16 6.24 5.19 86.38 0.45 6.69 16 22 N -0.74 -37.59 5.38 -343.43 -1.85 -39.44 16 23 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 24 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 25 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 26 N -0.96 -59.31 13.06 21.65 0.28 -59.03 16 27 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 30 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 31 H 0.05 1.19 6.57 -2.39 -0.02 1.17 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.17 4.99 -2.39 -0.01 1.16 16 34 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 2.10 6.99 -2.38 -0.02 2.08 16 37 H 0.09 1.72 6.70 -2.39 -0.02 1.70 16 38 H 0.19 6.43 7.33 -2.91 -0.02 6.41 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.08 2.35 6.69 -2.39 -0.02 2.33 16 48 H 0.07 2.85 3.95 -2.39 -0.01 2.84 16 49 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.03 1.25 6.72 -2.39 -0.02 1.24 16 51 H 0.37 20.42 6.89 -92.71 -0.64 19.78 16 52 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -75.05 395.11 2.34 -72.71 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.29 Total: 39.84 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.14 Total: 5.45 kcal Atomic # 7 Polarization: -139.17 SS G_CDS: -6.05 Total: -145.22 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.05 2.34 -72.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133221185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.553 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds