Wall clock time and date at job start Wed Apr 1 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45760 * 2 1 4 4 C 1.53035 * 109.45242 * 240.02932 * 2 1 3 5 5 C 1.53194 * 109.31441 * 178.61947 * 4 2 1 6 6 N 1.46930 * 108.77308 * 54.63431 * 5 4 2 7 7 C 1.34772 * 120.62606 * 126.41340 * 6 5 4 8 8 O 1.21609 * 119.99562 * 176.30569 * 7 6 5 9 9 C 1.47428 * 120.00449 * 356.30791 * 7 6 5 10 10 C 1.41290 * 126.41482 * 43.01296 * 9 7 6 11 11 N 1.30444 * 108.02425 * 179.97438 * 10 9 7 12 12 N 1.39935 * 108.89592 * 359.97438 * 11 10 9 13 13 C 1.46498 * 125.75182 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47507 * 304.97524 * 13 12 11 15 15 C 1.52999 * 117.50251 * 243.75176 * 14 13 12 16 16 C 1.52994 * 117.50236 * 175.08543 * 14 13 12 17 17 C 1.34263 * 108.49269 * 359.75281 * 12 11 10 18 18 C 1.46924 * 118.73851 * 306.39428 * 6 5 4 19 19 C 1.53042 * 109.45780 * 119.96435 * 2 1 3 20 20 H 1.08999 * 109.49844 * 61.42675 * 19 2 1 21 21 C 1.52997 * 109.50157 * 301.35801 * 19 2 1 22 22 N 1.46501 * 109.47187 * 175.06143 * 21 19 2 23 23 C 1.36937 * 119.99642 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00272 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99513 * 180.02562 * 23 22 21 26 26 N 1.31617 * 120.00519 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00002 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47157 * 59.99443 * 27 25 23 29 29 H 1.48498 * 109.47211 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46996 * 299.99786 * 27 25 23 31 31 H 1.08993 * 109.47653 * 300.02789 * 1 2 3 32 32 H 1.09002 * 109.47037 * 60.03854 * 1 2 3 33 33 H 1.09007 * 109.46440 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.50068 * 298.57320 * 4 2 1 35 35 H 1.08999 * 109.49981 * 58.67020 * 4 2 1 36 36 H 1.09002 * 109.58841 * 174.42134 * 5 4 2 37 37 H 1.08996 * 109.58633 * 294.70540 * 5 4 2 38 38 H 1.08005 * 125.98682 * 359.97412 * 10 9 7 39 39 H 1.09000 * 109.47702 * 64.97757 * 13 12 11 40 40 H 1.08999 * 109.47100 * 184.97917 * 13 12 11 41 41 H 1.09005 * 115.54732 * 29.41988 * 14 13 12 42 42 H 1.08998 * 117.49465 * 359.97438 * 15 14 13 43 43 H 1.09002 * 117.49756 * 145.01901 * 15 14 13 44 44 H 1.09006 * 117.49991 * 214.97607 * 16 14 13 45 45 H 1.08997 * 117.50189 * 359.97438 * 16 14 13 46 46 H 1.07997 * 126.28594 * 180.23851 * 17 12 11 47 47 H 1.08997 * 109.58702 * 293.81856 * 18 6 5 48 48 H 1.09004 * 109.58252 * 173.40143 * 18 6 5 49 49 H 1.09001 * 109.47356 * 295.06992 * 21 19 2 50 50 H 1.09005 * 109.47057 * 55.06571 * 21 19 2 51 51 H 0.96999 * 120.00038 * 0.02562 * 22 21 19 52 52 H 0.96998 * 120.00303 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5712 -0.6889 -1.2644 6 7 4.0677 -1.2492 -0.0001 7 6 4.9617 -2.2577 -0.0002 8 8 5.4157 -2.6677 1.0508 9 6 5.3893 -2.8637 -1.2743 10 6 5.7141 -2.1740 -2.4638 11 7 6.0441 -3.0573 -3.3652 12 7 5.9482 -4.3354 -2.8037 13 6 6.2358 -5.5964 -3.4918 14 6 5.3949 -5.6851 -4.7669 15 6 4.3573 -6.8062 -4.8523 16 6 5.6360 -6.8807 -5.6905 17 6 5.5539 -4.2109 -1.5263 18 6 3.5713 -0.6888 1.2642 19 6 2.0398 -0.7207 1.2501 20 1 1.6977 -1.7556 1.2385 21 6 1.5023 -0.0192 2.4990 22 7 1.8925 -0.7767 3.6907 23 6 1.5208 -0.3374 4.9333 24 1 0.9397 0.5672 5.0348 25 6 1.8910 -1.0549 6.0625 26 7 2.5988 -2.1577 5.9389 27 14 1.3834 -0.4561 7.7576 28 1 -0.0982 -0.3982 7.8390 29 1 1.8991 -1.3925 8.7883 30 1 1.9453 0.8982 7.9929 31 1 -0.3634 0.5142 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3632 -1.0278 0.0005 34 1 1.6974 -1.7557 -1.2383 35 1 1.6571 -0.2208 -2.1398 36 1 3.9414 -1.2850 -2.0985 37 1 3.9142 0.3403 -1.3701 38 1 5.6929 -1.1031 -2.6025 39 1 7.2938 -5.6359 -3.7509 40 1 5.9909 -6.4321 -2.8362 41 1 5.1452 -4.7317 -5.2326 42 1 4.2740 -7.4809 -4.0003 43 1 3.4251 -6.5905 -5.3746 44 1 5.5445 -6.7141 -6.7638 45 1 6.3941 -7.6040 -5.3900 46 1 5.3923 -5.0169 -0.8259 47 1 3.9144 0.3406 1.3672 48 1 3.9417 -1.2848 2.0983 49 1 1.9161 0.9876 2.5567 50 1 0.4151 0.0374 2.4444 51 1 2.4141 -1.5894 3.5996 52 1 2.8578 -2.6588 6.7279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133230267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:22 Heat of formation + Delta-G solvation = 79.970517 kcal Electronic energy + Delta-G solvation = -30644.143806 eV Core-core repulsion = 26646.483470 eV Total energy + Delta-G solvation = -3997.660336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.63317 -39.77030 -38.04362 -37.60474 -34.91784 -33.68255 -33.12680 -31.80859 -30.55827 -29.73819 -28.31806 -27.45244 -25.43918 -23.82054 -23.16412 -22.91987 -22.13512 -21.85004 -21.14665 -20.61219 -19.81343 -19.04278 -17.68949 -16.96919 -16.37867 -16.16370 -15.69952 -15.44198 -14.88950 -14.78683 -14.69723 -14.45896 -14.06585 -13.87851 -13.78019 -13.54347 -13.35377 -13.12386 -12.92657 -12.72945 -12.57936 -12.38233 -12.21025 -12.05535 -11.79538 -11.64588 -11.39473 -11.16804 -10.99460 -10.92806 -10.82365 -10.73221 -10.61366 -10.51716 -10.24166 -10.08396 -9.91670 -9.72082 -9.59504 -9.48927 -8.79068 -8.76110 -8.32878 -6.81696 -5.65770 -2.95087 1.48529 2.05271 2.13302 3.09275 3.23004 3.42767 3.50144 3.54011 3.55650 3.88922 4.27145 4.38173 4.46221 4.57408 4.64870 4.67304 4.81408 4.85601 4.86425 4.94797 4.96082 5.05292 5.12328 5.25443 5.31353 5.36683 5.37251 5.49042 5.54794 5.57639 5.66542 5.67181 5.75047 5.75544 5.81902 5.89799 6.01327 6.04133 6.09796 6.21903 6.26562 6.32108 6.40125 6.52822 6.61029 6.66469 6.78590 6.89381 6.97726 7.34851 7.67013 7.77698 8.47437 8.52171 9.62921 10.21839 10.55984 11.56541 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.002334 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.684070 B =11993.008418 C =12877.290306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.127 4.127 5 C 0.099 3.901 6 N -0.604 5.604 7 C 0.589 3.411 8 O -0.534 6.534 9 C -0.279 4.279 10 C 0.076 3.924 11 N -0.295 5.295 12 N -0.359 5.359 13 C 0.163 3.837 14 C -0.171 4.171 15 C -0.177 4.177 16 C -0.170 4.170 17 C 0.117 3.883 18 C 0.122 3.878 19 C -0.101 4.101 20 H 0.073 0.927 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.191 0.809 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.185 0.815 47 H 0.065 0.935 48 H 0.103 0.897 49 H 0.018 0.982 50 H 0.026 0.974 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -5.104 -27.380 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.165 4.165 5 C -0.024 4.024 6 N -0.337 5.337 7 C 0.376 3.624 8 O -0.410 6.410 9 C -0.294 4.294 10 C -0.111 4.111 11 N -0.115 5.115 12 N -0.139 5.139 13 C 0.042 3.958 14 C -0.189 4.189 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.033 4.033 18 C 0.000 4.000 19 C -0.120 4.120 20 H 0.091 0.909 21 C 0.031 3.969 22 N -0.377 5.377 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.208 0.792 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.036 0.964 50 H 0.044 0.956 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.017 -5.562 -27.948 28.934 hybrid contribution -0.449 0.196 1.747 1.814 sum 4.569 -5.366 -26.201 27.132 Atomic orbital electron populations 1.21882 0.95098 1.01884 1.01619 1.21092 0.95845 0.99356 0.94042 0.91108 1.21966 0.94866 1.01454 0.98255 1.21993 0.94728 0.98987 0.86734 1.47968 1.42809 1.35325 1.07590 1.17334 0.78599 0.79062 0.87360 1.90849 1.55353 1.62073 1.32766 1.20267 1.19300 0.93058 0.96744 1.24078 0.97375 0.99756 0.89900 1.77096 1.24537 0.87344 1.22569 1.48384 1.50885 1.06188 1.08407 1.21372 1.00378 0.81179 0.92853 1.22553 1.02663 0.95841 0.97879 1.23140 0.94078 1.01177 1.03034 1.22991 1.00045 0.99753 0.97914 1.22895 0.95596 0.98035 0.86799 1.21715 0.93505 0.99102 0.85630 1.21705 0.94600 1.00670 0.95064 0.90863 1.20725 0.96770 0.94051 0.85400 1.42411 1.65304 1.29215 1.00790 1.19152 1.27818 1.06347 0.83837 0.91330 1.24750 1.00901 0.97570 0.97765 1.69662 1.42330 1.17288 1.28564 0.86291 0.77933 0.77642 0.84439 1.21386 1.21754 1.21323 0.91665 0.93308 0.92854 0.91624 0.91092 0.89245 0.91485 0.79247 0.88926 0.88161 0.86305 0.88385 0.88442 0.88264 0.88362 0.79836 0.91699 0.87834 0.96413 0.95588 0.78117 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.81 37.16 0.33 -1.45 16 2 C -0.08 -1.06 2.23 -90.58 -0.20 -1.26 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.34 5.36 -26.61 -0.14 -1.48 16 5 C 0.10 1.05 5.70 -3.71 -0.02 1.03 16 6 N -0.60 -8.84 2.97 -174.03 -0.52 -9.36 16 7 C 0.59 9.62 7.59 -12.52 -0.09 9.52 16 8 O -0.53 -11.22 16.52 5.27 0.09 -11.14 16 9 C -0.28 -3.58 5.34 -105.07 -0.56 -4.15 16 10 C 0.08 0.82 9.57 -16.98 -0.16 0.66 16 11 N -0.30 -3.27 12.14 30.86 0.37 -2.90 16 12 N -0.36 -3.50 3.65 -60.81 -0.22 -3.72 16 13 C 0.16 1.04 6.77 -4.04 -0.03 1.01 16 14 C -0.17 -1.07 5.92 -90.62 -0.54 -1.61 16 15 C -0.18 -0.95 10.18 -26.69 -0.27 -1.22 16 16 C -0.17 -0.79 10.25 -26.69 -0.27 -1.06 16 17 C 0.12 1.29 11.44 -16.56 -0.19 1.10 16 18 C 0.12 2.11 5.51 -3.71 -0.02 2.09 16 19 C -0.10 -1.67 1.92 -90.50 -0.17 -1.84 16 20 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.16 3.21 5.41 -4.04 -0.02 3.18 16 22 N -0.73 -19.06 5.38 -59.91 -0.32 -19.39 16 23 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 27 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 31 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.84 4.14 -51.93 -0.22 0.62 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.19 1.55 7.10 -52.48 -0.37 1.18 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.44 7.80 -51.93 -0.40 0.03 16 41 H 0.12 0.95 7.90 -51.93 -0.41 0.54 16 42 H 0.10 0.46 8.03 -51.93 -0.42 0.05 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.10 2.24 6.23 -51.93 -0.32 1.91 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 51 H 0.38 10.74 6.90 -40.82 -0.28 10.46 16 52 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 412.66 15.07 6.22 6.22 Total: -1.00 -35.72 412.66 -9.83 -45.55 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.54 Total: 8.26 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.62 Total: -3.02 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.04 Total: -63.86 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.72 -9.83 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133230267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.519 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds