Wall clock time and date at job start Wed Apr 1 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45760 * 2 1 4 4 C 1.53035 * 109.45242 * 240.02932 * 2 1 3 5 5 C 1.53194 * 109.31441 * 178.61947 * 4 2 1 6 6 N 1.46930 * 108.77308 * 54.63431 * 5 4 2 7 7 C 1.34772 * 120.62606 * 126.41340 * 6 5 4 8 8 O 1.21609 * 119.99562 * 176.30569 * 7 6 5 9 9 C 1.47428 * 120.00449 * 356.30791 * 7 6 5 10 10 C 1.41290 * 126.41482 * 43.01296 * 9 7 6 11 11 N 1.30444 * 108.02425 * 179.97438 * 10 9 7 12 12 N 1.39935 * 108.89592 * 359.97438 * 11 10 9 13 13 C 1.46498 * 125.75182 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47507 * 304.97524 * 13 12 11 15 15 C 1.52999 * 117.50251 * 243.75176 * 14 13 12 16 16 C 1.52994 * 117.50236 * 175.08543 * 14 13 12 17 17 C 1.34263 * 108.49269 * 359.75281 * 12 11 10 18 18 C 1.46924 * 118.73851 * 306.39428 * 6 5 4 19 19 C 1.53042 * 109.45780 * 119.96435 * 2 1 3 20 20 H 1.08999 * 109.49844 * 61.42675 * 19 2 1 21 21 C 1.52997 * 109.50157 * 301.35801 * 19 2 1 22 22 N 1.46501 * 109.47187 * 175.06143 * 21 19 2 23 23 C 1.36937 * 119.99642 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00272 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99513 * 180.02562 * 23 22 21 26 26 N 1.31617 * 120.00519 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00002 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47157 * 59.99443 * 27 25 23 29 29 H 1.48498 * 109.47211 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46996 * 299.99786 * 27 25 23 31 31 H 1.08993 * 109.47653 * 300.02789 * 1 2 3 32 32 H 1.09002 * 109.47037 * 60.03854 * 1 2 3 33 33 H 1.09007 * 109.46440 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.50068 * 298.57320 * 4 2 1 35 35 H 1.08999 * 109.49981 * 58.67020 * 4 2 1 36 36 H 1.09002 * 109.58841 * 174.42134 * 5 4 2 37 37 H 1.08996 * 109.58633 * 294.70540 * 5 4 2 38 38 H 1.08005 * 125.98682 * 359.97412 * 10 9 7 39 39 H 1.09000 * 109.47702 * 64.97757 * 13 12 11 40 40 H 1.08999 * 109.47100 * 184.97917 * 13 12 11 41 41 H 1.09005 * 115.54732 * 29.41988 * 14 13 12 42 42 H 1.08998 * 117.49465 * 359.97438 * 15 14 13 43 43 H 1.09002 * 117.49756 * 145.01901 * 15 14 13 44 44 H 1.09006 * 117.49991 * 214.97607 * 16 14 13 45 45 H 1.08997 * 117.50189 * 359.97438 * 16 14 13 46 46 H 1.07997 * 126.28594 * 180.23851 * 17 12 11 47 47 H 1.08997 * 109.58702 * 293.81856 * 18 6 5 48 48 H 1.09004 * 109.58252 * 173.40143 * 18 6 5 49 49 H 1.09001 * 109.47356 * 295.06992 * 21 19 2 50 50 H 1.09005 * 109.47057 * 55.06571 * 21 19 2 51 51 H 0.96999 * 120.00038 * 0.02562 * 22 21 19 52 52 H 0.96998 * 120.00303 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5712 -0.6889 -1.2644 6 7 4.0677 -1.2492 -0.0001 7 6 4.9617 -2.2577 -0.0002 8 8 5.4157 -2.6677 1.0508 9 6 5.3893 -2.8637 -1.2743 10 6 5.7141 -2.1740 -2.4638 11 7 6.0441 -3.0573 -3.3652 12 7 5.9482 -4.3354 -2.8037 13 6 6.2358 -5.5964 -3.4918 14 6 5.3949 -5.6851 -4.7669 15 6 4.3573 -6.8062 -4.8523 16 6 5.6360 -6.8807 -5.6905 17 6 5.5539 -4.2109 -1.5263 18 6 3.5713 -0.6888 1.2642 19 6 2.0398 -0.7207 1.2501 20 1 1.6977 -1.7556 1.2385 21 6 1.5023 -0.0192 2.4990 22 7 1.8925 -0.7767 3.6907 23 6 1.5208 -0.3374 4.9333 24 1 0.9397 0.5672 5.0348 25 6 1.8910 -1.0549 6.0625 26 7 2.5988 -2.1577 5.9389 27 14 1.3834 -0.4561 7.7576 28 1 -0.0982 -0.3982 7.8390 29 1 1.8991 -1.3925 8.7883 30 1 1.9453 0.8982 7.9929 31 1 -0.3634 0.5142 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3632 -1.0278 0.0005 34 1 1.6974 -1.7557 -1.2383 35 1 1.6571 -0.2208 -2.1398 36 1 3.9414 -1.2850 -2.0985 37 1 3.9142 0.3403 -1.3701 38 1 5.6929 -1.1031 -2.6025 39 1 7.2938 -5.6359 -3.7509 40 1 5.9909 -6.4321 -2.8362 41 1 5.1452 -4.7317 -5.2326 42 1 4.2740 -7.4809 -4.0003 43 1 3.4251 -6.5905 -5.3746 44 1 5.5445 -6.7141 -6.7638 45 1 6.3941 -7.6040 -5.3900 46 1 5.3923 -5.0169 -0.8259 47 1 3.9144 0.3406 1.3672 48 1 3.9417 -1.2848 2.0983 49 1 1.9161 0.9876 2.5567 50 1 0.4151 0.0374 2.4444 51 1 2.4141 -1.5894 3.5996 52 1 2.8578 -2.6588 6.7279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133230267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:21 Heat of formation + Delta-G solvation = 57.358084 kcal Electronic energy + Delta-G solvation = -30645.124355 eV Core-core repulsion = 26646.483470 eV Total energy + Delta-G solvation = -3998.640885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.51003 -40.94232 -39.01992 -38.40890 -36.59258 -35.09639 -33.91373 -33.48143 -31.71399 -31.19014 -29.30427 -28.39901 -27.03058 -25.07379 -24.75342 -23.30247 -22.89115 -22.81318 -22.51134 -21.29722 -21.02994 -20.08969 -19.13490 -18.51373 -17.42505 -17.07202 -16.73227 -16.62279 -16.24473 -15.89774 -15.60275 -15.47202 -15.42712 -15.15010 -14.88246 -14.79446 -14.47617 -14.19773 -14.11557 -13.98193 -13.77723 -13.65180 -13.05797 -13.02430 -12.77900 -12.68827 -12.62135 -12.56611 -12.40676 -12.19452 -12.06317 -11.96596 -11.88080 -11.73235 -11.43449 -11.28945 -11.15009 -11.05429 -10.93189 -10.79432 -10.49601 -9.76908 -9.48014 -8.97415 -7.92359 -5.22450 0.59537 1.19380 1.33529 1.45659 1.50164 1.56255 1.93587 2.28908 2.56910 2.82180 3.30812 3.40121 3.62692 3.74031 3.79985 3.84222 3.86471 3.92601 3.98631 4.03435 4.09668 4.17379 4.23658 4.28020 4.33942 4.46256 4.50587 4.58574 4.62195 4.63425 4.70419 4.77805 4.80387 4.82787 4.89339 4.97978 4.99563 5.00849 5.11615 5.15734 5.18342 5.22367 5.26835 5.30448 5.40308 5.47608 5.50183 5.60457 5.62256 5.85316 6.28188 6.47523 6.53915 7.23612 7.33477 8.10912 8.32933 9.31039 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.002334 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.684070 B =11993.008418 C =12877.290306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.086 0.914 4 C -0.120 4.120 5 C 0.094 3.906 6 N -0.600 5.600 7 C 0.585 3.415 8 O -0.597 6.597 9 C -0.303 4.303 10 C 0.084 3.916 11 N -0.307 5.307 12 N -0.351 5.351 13 C 0.155 3.845 14 C -0.180 4.180 15 C -0.181 4.181 16 C -0.157 4.157 17 C 0.119 3.881 18 C 0.130 3.870 19 C -0.086 4.086 20 H 0.049 0.951 21 C 0.157 3.843 22 N -0.748 5.748 23 C -0.244 4.244 24 H 0.079 0.921 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.977 3.023 28 H -0.275 1.275 29 H -0.297 1.297 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.216 0.784 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.196 0.804 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.024 0.976 50 H 0.034 0.966 51 H 0.370 0.630 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -4.088 -30.171 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.027 4.027 6 N -0.331 5.331 7 C 0.374 3.626 8 O -0.478 6.478 9 C -0.318 4.318 10 C -0.103 4.103 11 N -0.127 5.127 12 N -0.129 5.129 13 C 0.036 3.964 14 C -0.199 4.199 15 C -0.218 4.218 16 C -0.194 4.194 17 C -0.033 4.033 18 C 0.007 3.993 19 C -0.106 4.106 20 H 0.067 0.933 21 C 0.030 3.970 22 N -0.390 5.390 23 C -0.376 4.376 24 H 0.097 0.903 25 C -0.273 4.273 26 N -0.623 5.623 27 Si 0.805 3.195 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.202 1.202 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.131 0.869 46 H 0.213 0.787 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.042 0.958 50 H 0.051 0.949 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.294 -4.495 -30.835 31.455 hybrid contribution -0.245 -0.133 2.505 2.520 sum 4.048 -4.627 -28.330 28.990 Atomic orbital electron populations 1.21854 0.94381 1.01584 1.02389 1.21087 0.96361 0.99685 0.92545 0.89599 1.21950 0.94513 1.00927 0.98431 1.22344 0.94931 1.00485 0.84930 1.48027 1.42090 1.34829 1.08123 1.17885 0.78090 0.78783 0.87809 1.90812 1.57752 1.64025 1.35222 1.20049 1.21752 0.94083 0.95917 1.24391 0.96420 1.00873 0.88568 1.77082 1.24825 0.87899 1.22880 1.48651 1.49510 1.06833 1.07929 1.21728 1.01130 0.80347 0.93216 1.22424 1.03660 0.95575 0.98253 1.23210 0.94193 1.00814 1.03554 1.23083 0.99759 0.98671 0.97892 1.23123 0.94684 0.97945 0.87542 1.21382 0.93972 0.98337 0.85652 1.21544 0.93874 0.99457 0.95739 0.93296 1.20925 0.97152 0.93892 0.84987 1.42674 1.65117 1.29218 1.02007 1.19633 1.26732 1.06214 0.85019 0.90295 1.25664 1.01678 0.98030 1.01953 1.69862 1.44342 1.18949 1.29173 0.85161 0.77976 0.77131 0.79190 1.20089 1.22385 1.20220 0.93132 0.90262 0.93721 0.92826 0.87303 0.87532 0.88834 0.76793 0.87836 0.85987 0.88172 0.87643 0.88765 0.87884 0.86913 0.78709 0.91055 0.93117 0.95822 0.94855 0.79857 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.81 71.98 0.63 -2.51 16 2 C -0.08 -1.78 2.23 -10.77 -0.02 -1.81 16 3 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 4 C -0.12 -2.16 5.36 30.67 0.16 -1.99 16 5 C 0.09 1.76 5.70 86.36 0.49 2.25 16 6 N -0.60 -17.69 2.97 -822.77 -2.45 -20.13 16 7 C 0.58 19.86 7.59 86.66 0.66 20.52 16 8 O -0.60 -27.05 16.52 -4.06 -0.07 -27.12 16 9 C -0.30 -7.72 5.34 -20.15 -0.11 -7.83 16 10 C 0.08 1.67 9.57 85.65 0.82 2.49 16 11 N -0.31 -6.28 12.14 -56.27 -0.68 -6.97 16 12 N -0.35 -6.36 3.65 -346.30 -1.26 -7.62 16 13 C 0.16 1.69 6.77 86.38 0.58 2.28 16 14 C -0.18 -1.97 5.92 -10.80 -0.06 -2.04 16 15 C -0.18 -1.64 10.18 30.62 0.31 -1.33 16 16 C -0.16 -1.12 10.25 30.62 0.31 -0.81 16 17 C 0.12 2.58 11.44 84.27 0.96 3.54 16 18 C 0.13 4.67 5.51 86.36 0.48 5.15 16 19 C -0.09 -2.91 1.92 -10.72 -0.02 -2.93 16 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 21 C 0.16 6.44 5.41 86.38 0.47 6.91 16 22 N -0.75 -40.45 5.38 -343.45 -1.85 -42.30 16 23 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 24 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 25 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 26 N -0.97 -63.62 13.06 21.65 0.28 -63.33 16 27 Si 0.98 48.17 29.55 68.60 2.03 50.20 16 28 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 30 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 31 H 0.05 1.24 6.30 -2.39 -0.02 1.23 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.68 4.14 -2.39 -0.01 1.67 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.22 2.89 7.10 -2.91 -0.02 2.87 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.12 0.79 7.80 -2.39 -0.02 0.77 16 41 H 0.10 1.51 7.90 -2.38 -0.02 1.49 16 42 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.20 3.62 8.06 -2.91 -0.02 3.60 16 47 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.05 2.39 6.23 -2.38 -0.01 2.37 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.03 1.35 6.14 -2.38 -0.01 1.33 16 51 H 0.37 22.01 6.90 -92.71 -0.64 21.37 16 52 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -82.47 412.66 3.26 -79.21 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.28 Total: 34.08 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.98 Total: 3.99 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -5.96 Total: -140.36 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.07 Total: -27.12 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -82.47 3.26 -79.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133230267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.570 kcal (2) G-P(sol) polarization free energy of solvation -82.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds