Wall clock time and date at job start Wed Apr 1 2020 03:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.45990 * 2 1 4 4 C 1.53039 * 109.44841 * 119.96182 * 2 1 3 5 5 C 1.53195 * 109.30979 * 58.65235 * 4 2 1 6 6 N 1.46922 * 108.77709 * 54.63446 * 5 4 2 7 7 C 1.34772 * 120.63334 * 126.37364 * 6 5 4 8 8 O 1.21601 * 120.00396 * 175.81209 * 7 6 5 9 9 C 1.47457 * 119.99962 * 355.80677 * 7 6 5 10 10 C 1.39533 * 120.63548 * 54.04912 * 9 7 6 11 11 N 1.31633 * 120.62588 * 179.77439 * 10 9 7 12 12 C 1.32177 * 122.11557 * 0.49412 * 11 10 9 13 13 C 1.37768 * 121.22689 * 359.77380 * 12 11 10 14 14 C 1.39501 * 119.20802 * 359.97386 * 13 12 11 15 15 N 1.38451 * 120.94993 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00420 * 300.02252 * 15 14 13 17 17 C 1.46903 * 111.00059 * 63.98093 * 15 14 13 18 18 C 1.46928 * 118.73924 * 306.38938 * 6 5 4 19 19 C 1.53041 * 109.46144 * 240.02587 * 2 1 3 20 20 H 1.08998 * 109.49452 * 181.40624 * 19 2 1 21 21 C 1.53001 * 109.49287 * 61.34236 * 19 2 1 22 22 N 1.46498 * 109.46663 * 175.06481 * 21 19 2 23 23 C 1.36940 * 120.00080 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99802 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00313 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99977 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00265 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46776 * 60.00076 * 27 25 23 29 29 H 1.48497 * 109.46913 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.46883 * 300.00162 * 27 25 23 31 31 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47062 * 299.97308 * 1 2 3 33 33 H 1.09002 * 109.46891 * 59.97171 * 1 2 3 34 34 H 1.08997 * 109.49939 * 178.59582 * 4 2 1 35 35 H 1.08998 * 109.50013 * 298.70016 * 4 2 1 36 36 H 1.08999 * 109.58527 * 174.42297 * 5 4 2 37 37 H 1.09001 * 109.58547 * 294.69783 * 5 4 2 38 38 H 1.07997 * 119.68296 * 359.97438 * 10 9 7 39 39 H 1.08006 * 119.38595 * 179.74937 * 12 11 10 40 40 H 1.07996 * 120.39782 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.46981 * 63.95171 * 16 15 14 42 42 H 1.09001 * 109.47507 * 183.95427 * 16 15 14 43 43 H 1.09004 * 109.46776 * 303.95927 * 16 15 14 44 44 H 1.08993 * 109.47412 * 56.04136 * 17 15 14 45 45 H 1.09003 * 109.47122 * 176.04475 * 17 15 14 46 46 H 1.08999 * 109.46960 * 296.03970 * 17 15 14 47 47 H 1.09000 * 109.58727 * 293.82411 * 18 6 5 48 48 H 1.08997 * 109.58786 * 173.39875 * 18 6 5 49 49 H 1.09004 * 109.47397 * 295.06175 * 21 19 2 50 50 H 1.08995 * 109.47531 * 55.06523 * 21 19 2 51 51 H 0.97004 * 120.00543 * 0.02562 * 22 21 19 52 52 H 0.96994 * 120.00155 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4991 -2.1540 1.2644 6 7 1.8621 -2.8089 0.0002 7 6 2.5157 -3.9875 0.0004 8 8 2.7433 -4.5567 -1.0498 9 6 2.9549 -4.5869 1.2740 10 6 2.0455 -4.7996 2.3107 11 7 2.4369 -5.3387 3.4460 12 6 3.6927 -5.6908 3.6606 13 6 4.6593 -5.5127 2.6952 14 6 4.3020 -4.9504 1.4696 15 7 5.2442 -4.7545 0.4743 16 6 6.3167 -3.8616 0.9328 17 6 5.7898 -6.0357 0.0064 18 6 1.4994 -2.1542 -1.2641 19 6 2.0399 -0.7209 -1.2500 20 1 3.1296 -0.7431 -1.2380 21 6 1.5579 0.0198 -2.4989 22 7 2.1422 -0.6006 -3.6905 23 6 1.8514 -0.1044 -4.9333 24 1 1.1915 0.7445 -5.0349 25 6 2.4054 -0.6919 -6.0623 26 7 3.2100 -1.7262 -5.9384 27 14 2.0093 -0.0146 -7.7576 28 1 2.4466 1.4022 -7.8391 29 1 2.7205 -0.8129 -8.7881 30 1 0.5453 -0.0951 -7.9930 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8898 34 1 3.1293 -0.7430 1.2386 35 1 1.6955 -0.1933 2.1399 36 1 1.9375 -2.7017 2.0986 37 1 0.4143 -2.1345 1.3699 38 1 1.0101 -4.5222 2.1792 39 1 3.9662 -6.1260 4.6105 40 1 5.6814 -5.8057 2.8847 41 1 6.8554 -4.3330 1.7549 42 1 7.0055 -3.6687 0.1103 43 1 5.8850 -2.9205 1.2737 44 1 4.9746 -6.6777 -0.3273 45 1 6.4749 -5.8579 -0.8225 46 1 6.3249 -6.5222 0.8220 47 1 0.4145 -2.1346 -1.3674 48 1 1.9380 -2.7020 -2.0982 49 1 0.4707 -0.0349 -2.5569 50 1 1.8668 1.0636 -2.4442 51 1 2.7345 -1.3633 -3.5993 52 1 3.5968 -2.1370 -6.7273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133250290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:33 Heat of formation + Delta-G solvation = 33.119647 kcal Electronic energy + Delta-G solvation = -32090.234849 eV Core-core repulsion = 28090.542906 eV Total energy + Delta-G solvation = -3999.691942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22019 -39.79265 -37.82244 -37.59111 -34.89606 -33.50413 -32.05285 -31.59014 -31.36635 -29.72657 -27.83871 -27.61871 -26.04841 -25.29941 -24.99872 -23.71588 -23.11847 -21.85825 -21.14424 -20.04049 -18.32989 -17.52880 -17.39025 -16.95062 -16.85166 -16.00388 -15.32446 -15.13441 -14.94502 -14.81497 -14.80288 -14.69321 -14.22813 -14.10786 -13.86822 -13.58113 -13.47522 -13.02632 -12.86823 -12.76850 -12.57941 -12.51548 -12.37735 -12.18409 -11.92674 -11.86075 -11.59233 -11.20023 -11.01904 -10.87260 -10.74342 -10.58013 -10.28117 -10.23116 -10.11696 -9.90205 -9.80940 -9.58589 -9.55238 -9.27177 -8.78768 -8.76158 -8.35330 -6.82597 -5.66007 -2.95597 0.56521 0.77503 2.81349 3.08561 3.45108 3.47502 3.49642 3.53576 3.55188 4.04560 4.39101 4.52543 4.63974 4.64672 4.74452 4.80718 4.89613 4.95069 5.00450 5.08167 5.20993 5.24342 5.26278 5.30760 5.33229 5.35444 5.39348 5.59932 5.63074 5.65929 5.71392 5.72854 5.75112 5.81187 5.89135 5.95300 6.01358 6.06860 6.16360 6.22245 6.37581 6.40048 6.42495 6.57301 6.64416 6.73110 6.84110 6.95900 6.96754 7.54568 7.58921 7.77144 8.38354 8.51658 9.62509 10.21227 10.55414 11.56098 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003264 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.159541 B = 8575.544549 C =10063.810869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.100 3.900 6 N -0.605 5.605 7 C 0.569 3.431 8 O -0.504 6.504 9 C -0.153 4.153 10 C 0.135 3.865 11 N -0.488 5.488 12 C 0.119 3.881 13 C -0.210 4.210 14 C 0.184 3.816 15 N -0.508 5.508 16 C 0.030 3.970 17 C 0.036 3.964 18 C 0.124 3.876 19 C -0.101 4.101 20 H 0.073 0.927 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.068 0.932 25 C -0.012 4.012 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.032 0.968 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.029 0.971 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -5.191 24.285 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.354 3.646 8 O -0.378 6.378 9 C -0.159 4.159 10 C -0.024 4.024 11 N -0.197 5.197 12 C -0.037 4.037 13 C -0.232 4.232 14 C 0.080 3.920 15 N -0.228 5.228 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.002 3.998 19 C -0.121 4.121 20 H 0.091 0.909 21 C 0.033 3.967 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.086 0.914 48 H 0.121 0.879 49 H 0.040 0.960 50 H 0.037 0.963 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.155 -5.337 23.791 24.410 hybrid contribution 1.147 -0.041 -0.888 1.451 sum 2.302 -5.379 22.903 23.638 Atomic orbital electron populations 1.21989 0.95217 1.02005 1.01771 1.21070 0.96016 0.99319 0.93931 0.90914 1.21922 1.01048 0.95085 0.98473 1.21922 1.00276 0.93894 0.86214 1.48044 1.57386 1.20760 1.07716 1.17721 0.77780 0.81075 0.87994 1.90861 1.54141 1.60791 1.31976 1.21119 0.94233 1.03886 0.96681 1.23013 0.99644 0.92714 0.87078 1.67704 1.18318 1.11251 1.22422 1.22696 0.87903 0.94435 0.98677 1.22681 1.01954 1.03259 0.95309 1.19001 0.91633 0.91677 0.89657 1.59059 1.14283 1.15331 1.34108 1.22483 0.92921 0.96286 0.99964 1.22421 1.00271 0.88569 0.99745 1.21734 0.99829 0.92826 0.85376 1.21675 1.00871 0.94437 0.95068 0.90869 1.20673 0.95951 0.94669 0.85410 1.42415 1.56957 1.37591 1.00768 1.19149 1.23337 1.10960 0.83838 0.91357 1.24744 1.00071 0.98323 0.97727 1.69666 1.35382 1.24101 1.28551 0.86302 0.77623 0.77965 0.84478 1.21385 1.21741 1.21326 0.92397 0.93181 0.91772 0.91707 0.90988 0.90341 0.90880 0.81882 0.82438 0.84527 0.94996 0.89970 0.91159 0.90612 0.90045 0.95220 0.91366 0.87876 0.95970 0.96268 0.78070 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 2 C -0.08 -1.04 2.71 -90.58 -0.25 -1.29 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.32 5.63 -26.61 -0.15 -1.47 16 5 C 0.10 1.06 5.06 -3.71 -0.02 1.04 16 6 N -0.61 -8.73 2.97 -174.03 -0.52 -9.24 16 7 C 0.57 9.23 6.88 -12.51 -0.09 9.15 16 8 O -0.50 -10.50 16.22 5.28 0.09 -10.41 16 9 C -0.15 -2.00 4.91 -104.66 -0.51 -2.51 16 10 C 0.13 1.47 8.61 -17.15 -0.15 1.32 16 11 N -0.49 -5.14 10.34 -13.01 -0.13 -5.27 16 12 C 0.12 1.03 11.15 -17.57 -0.20 0.83 16 13 C -0.21 -1.90 8.74 -39.28 -0.34 -2.24 16 14 C 0.18 2.21 4.70 -83.40 -0.39 1.82 16 15 N -0.51 -6.44 4.23 -186.41 -0.79 -7.23 16 16 C 0.03 0.30 9.29 60.06 0.56 0.86 16 17 C 0.04 0.40 9.33 60.07 0.56 0.96 16 18 C 0.12 2.10 5.04 -3.71 -0.02 2.09 16 19 C -0.10 -1.66 2.15 -90.50 -0.19 -1.85 16 20 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 22 N -0.73 -19.02 5.38 -59.91 -0.32 -19.35 16 23 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 27 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.75 4.72 -51.93 -0.25 0.51 16 37 H 0.07 0.67 6.70 -51.93 -0.35 0.32 16 38 H 0.16 1.50 7.35 -52.49 -0.39 1.11 16 39 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.14 0.94 7.22 -52.49 -0.38 0.56 16 41 H 0.03 0.25 7.33 -51.93 -0.38 -0.13 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 44 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.03 0.25 7.54 -51.93 -0.39 -0.14 16 47 H 0.07 1.12 6.69 -51.93 -0.35 0.77 16 48 H 0.10 2.22 6.23 -51.93 -0.32 1.90 16 49 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.39 10.75 6.90 -40.82 -0.28 10.47 16 52 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -34.96 400.61 -9.32 -44.27 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.23 Total: 8.66 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.15 Total: 2.96 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.04 Total: -69.45 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.96 -9.32 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133250290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.394 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds