Wall clock time and date at job start Wed Apr 1 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.45990 * 2 1 4 4 C 1.53039 * 109.44841 * 119.96182 * 2 1 3 5 5 C 1.53195 * 109.30979 * 58.65235 * 4 2 1 6 6 N 1.46922 * 108.77709 * 54.63446 * 5 4 2 7 7 C 1.34772 * 120.63334 * 126.37364 * 6 5 4 8 8 O 1.21601 * 120.00396 * 175.81209 * 7 6 5 9 9 C 1.47457 * 119.99962 * 355.80677 * 7 6 5 10 10 C 1.39533 * 120.63548 * 54.04912 * 9 7 6 11 11 N 1.31633 * 120.62588 * 179.77439 * 10 9 7 12 12 C 1.32177 * 122.11557 * 0.49412 * 11 10 9 13 13 C 1.37768 * 121.22689 * 359.77380 * 12 11 10 14 14 C 1.39501 * 119.20802 * 359.97386 * 13 12 11 15 15 N 1.38451 * 120.94993 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00420 * 300.02252 * 15 14 13 17 17 C 1.46903 * 111.00059 * 63.98093 * 15 14 13 18 18 C 1.46928 * 118.73924 * 306.38938 * 6 5 4 19 19 C 1.53041 * 109.46144 * 240.02587 * 2 1 3 20 20 H 1.08998 * 109.49452 * 181.40624 * 19 2 1 21 21 C 1.53001 * 109.49287 * 61.34236 * 19 2 1 22 22 N 1.46498 * 109.46663 * 175.06481 * 21 19 2 23 23 C 1.36940 * 120.00080 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99802 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00313 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99977 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00265 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46776 * 60.00076 * 27 25 23 29 29 H 1.48497 * 109.46913 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.46883 * 300.00162 * 27 25 23 31 31 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47062 * 299.97308 * 1 2 3 33 33 H 1.09002 * 109.46891 * 59.97171 * 1 2 3 34 34 H 1.08997 * 109.49939 * 178.59582 * 4 2 1 35 35 H 1.08998 * 109.50013 * 298.70016 * 4 2 1 36 36 H 1.08999 * 109.58527 * 174.42297 * 5 4 2 37 37 H 1.09001 * 109.58547 * 294.69783 * 5 4 2 38 38 H 1.07997 * 119.68296 * 359.97438 * 10 9 7 39 39 H 1.08006 * 119.38595 * 179.74937 * 12 11 10 40 40 H 1.07996 * 120.39782 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.46981 * 63.95171 * 16 15 14 42 42 H 1.09001 * 109.47507 * 183.95427 * 16 15 14 43 43 H 1.09004 * 109.46776 * 303.95927 * 16 15 14 44 44 H 1.08993 * 109.47412 * 56.04136 * 17 15 14 45 45 H 1.09003 * 109.47122 * 176.04475 * 17 15 14 46 46 H 1.08999 * 109.46960 * 296.03970 * 17 15 14 47 47 H 1.09000 * 109.58727 * 293.82411 * 18 6 5 48 48 H 1.08997 * 109.58786 * 173.39875 * 18 6 5 49 49 H 1.09004 * 109.47397 * 295.06175 * 21 19 2 50 50 H 1.08995 * 109.47531 * 55.06523 * 21 19 2 51 51 H 0.97004 * 120.00543 * 0.02562 * 22 21 19 52 52 H 0.96994 * 120.00155 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4991 -2.1540 1.2644 6 7 1.8621 -2.8089 0.0002 7 6 2.5157 -3.9875 0.0004 8 8 2.7433 -4.5567 -1.0498 9 6 2.9549 -4.5869 1.2740 10 6 2.0455 -4.7996 2.3107 11 7 2.4369 -5.3387 3.4460 12 6 3.6927 -5.6908 3.6606 13 6 4.6593 -5.5127 2.6952 14 6 4.3020 -4.9504 1.4696 15 7 5.2442 -4.7545 0.4743 16 6 6.3167 -3.8616 0.9328 17 6 5.7898 -6.0357 0.0064 18 6 1.4994 -2.1542 -1.2641 19 6 2.0399 -0.7209 -1.2500 20 1 3.1296 -0.7431 -1.2380 21 6 1.5579 0.0198 -2.4989 22 7 2.1422 -0.6006 -3.6905 23 6 1.8514 -0.1044 -4.9333 24 1 1.1915 0.7445 -5.0349 25 6 2.4054 -0.6919 -6.0623 26 7 3.2100 -1.7262 -5.9384 27 14 2.0093 -0.0146 -7.7576 28 1 2.4466 1.4022 -7.8391 29 1 2.7205 -0.8129 -8.7881 30 1 0.5453 -0.0951 -7.9930 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8898 34 1 3.1293 -0.7430 1.2386 35 1 1.6955 -0.1933 2.1399 36 1 1.9375 -2.7017 2.0986 37 1 0.4143 -2.1345 1.3699 38 1 1.0101 -4.5222 2.1792 39 1 3.9662 -6.1260 4.6105 40 1 5.6814 -5.8057 2.8847 41 1 6.8554 -4.3330 1.7549 42 1 7.0055 -3.6687 0.1103 43 1 5.8850 -2.9205 1.2737 44 1 4.9746 -6.6777 -0.3273 45 1 6.4749 -5.8579 -0.8225 46 1 6.3249 -6.5222 0.8220 47 1 0.4145 -2.1346 -1.3674 48 1 1.9380 -2.7020 -2.0982 49 1 0.4707 -0.0349 -2.5569 50 1 1.8668 1.0636 -2.4442 51 1 2.7345 -1.3633 -3.5993 52 1 3.5968 -2.1370 -6.7273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133250290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:32 Heat of formation + Delta-G solvation = 8.503988 kcal Electronic energy + Delta-G solvation = -32091.302264 eV Core-core repulsion = 28090.542906 eV Total energy + Delta-G solvation = -4000.759357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.16598 -40.86892 -39.06833 -38.45985 -36.61974 -34.94439 -33.49562 -32.79730 -32.15091 -31.34179 -28.71782 -28.66473 -27.48681 -26.27565 -26.15992 -24.90327 -24.65642 -22.75496 -22.53715 -21.21076 -19.62539 -18.92911 -18.50171 -18.19385 -17.81388 -17.17429 -16.78041 -16.25566 -16.21571 -15.96633 -15.75599 -15.62409 -15.51198 -15.30122 -15.01739 -14.76772 -14.69289 -14.45694 -14.30866 -14.00563 -13.80705 -13.36766 -13.34453 -13.05883 -13.01877 -12.92927 -12.82824 -12.80664 -12.62397 -12.44746 -12.17113 -12.04269 -11.89658 -11.72252 -11.43303 -11.24083 -11.15264 -10.91344 -10.65326 -10.53426 -10.16019 -9.59554 -9.55486 -8.99343 -7.93047 -5.23650 -0.26049 -0.01303 1.44753 1.49293 1.55443 1.63012 1.98625 2.55962 2.61903 2.65441 3.28443 3.39284 3.50204 3.69143 3.79686 3.81710 3.84844 3.90319 3.99047 4.07403 4.19806 4.24080 4.27019 4.31737 4.38860 4.43918 4.47183 4.50263 4.55924 4.58126 4.60677 4.69793 4.78581 4.84171 4.84490 4.86588 4.92094 4.97427 5.05861 5.11606 5.17066 5.27297 5.31098 5.41208 5.43307 5.48720 5.53320 5.61817 5.76786 6.14158 6.26889 6.41080 6.79983 7.17049 7.32316 8.09321 8.31582 9.30098 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003264 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.159541 B = 8575.544549 C =10063.810869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.096 3.904 6 N -0.601 5.601 7 C 0.565 3.435 8 O -0.568 6.568 9 C -0.178 4.178 10 C 0.142 3.858 11 N -0.497 5.497 12 C 0.129 3.871 13 C -0.200 4.200 14 C 0.172 3.828 15 N -0.543 5.543 16 C 0.033 3.967 17 C 0.040 3.960 18 C 0.134 3.866 19 C -0.087 4.087 20 H 0.046 0.954 21 C 0.160 3.840 22 N -0.748 5.748 23 C -0.247 4.247 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.971 5.971 27 Si 0.977 3.023 28 H -0.275 1.275 29 H -0.297 1.297 30 H -0.276 1.276 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.178 0.822 39 H 0.197 0.803 40 H 0.165 0.835 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.047 0.953 49 H 0.031 0.969 50 H 0.023 0.977 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 -4.283 28.012 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.025 4.025 6 N -0.333 5.333 7 C 0.353 3.647 8 O -0.446 6.446 9 C -0.185 4.185 10 C -0.017 4.017 11 N -0.206 5.206 12 C -0.026 4.026 13 C -0.222 4.222 14 C 0.068 3.932 15 N -0.265 5.265 16 C -0.113 4.113 17 C -0.106 4.106 18 C 0.011 3.989 19 C -0.107 4.107 20 H 0.064 0.936 21 C 0.034 3.966 22 N -0.390 5.390 23 C -0.378 4.378 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.622 5.622 27 Si 0.805 3.195 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.202 1.202 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.194 0.806 39 H 0.214 0.786 40 H 0.182 0.818 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.041 0.959 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.390 -4.363 27.591 27.936 hybrid contribution 1.377 -0.321 -1.950 2.408 sum 1.767 -4.684 25.641 26.125 Atomic orbital electron populations 1.21963 0.93771 1.02225 1.02648 1.21055 0.97100 0.99204 0.92353 0.90197 1.21911 1.00401 0.94814 0.98682 1.22252 1.01893 0.93876 0.84472 1.48096 1.56635 1.20363 1.08184 1.18325 0.76797 0.80994 0.88570 1.90821 1.56623 1.62644 1.34543 1.20968 0.95567 1.06191 0.95744 1.23140 0.99790 0.92235 0.86556 1.67819 1.19381 1.11562 1.21826 1.23353 0.86981 0.92562 0.99747 1.22893 1.03495 1.02044 0.93754 1.19201 0.91107 0.92171 0.90686 1.58955 1.15545 1.16336 1.35627 1.22470 0.92345 0.95823 1.00656 1.22359 0.99435 0.88065 1.00729 1.21358 0.99563 0.92614 0.85338 1.21511 0.99126 0.94225 0.95825 0.93559 1.20860 0.96017 0.94742 0.84995 1.42680 1.56987 1.37368 1.02012 1.19633 1.22492 1.10682 0.85018 0.90311 1.25657 1.00556 0.98975 1.01919 1.69871 1.37189 1.25962 1.29157 0.85169 0.77655 0.77485 0.79195 1.20081 1.22356 1.20186 0.92483 0.89998 0.93223 0.92843 0.87149 0.88741 0.88469 0.80550 0.78605 0.81773 0.92056 0.90588 0.91929 0.92990 0.90532 0.92084 0.90687 0.93416 0.95071 0.95894 0.79877 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.11 71.98 0.58 -2.37 16 2 C -0.08 -1.80 2.71 -10.77 -0.03 -1.83 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.12 -2.18 5.63 30.67 0.17 -2.01 16 5 C 0.10 1.84 5.06 86.36 0.44 2.28 16 6 N -0.60 -17.87 2.97 -822.76 -2.45 -20.31 16 7 C 0.57 19.48 6.88 86.67 0.60 20.07 16 8 O -0.57 -26.05 16.22 -4.03 -0.07 -26.12 16 9 C -0.18 -4.66 4.91 -19.89 -0.10 -4.76 16 10 C 0.14 2.86 8.61 85.04 0.73 3.59 16 11 N -0.50 -8.97 10.34 -195.07 -2.02 -10.98 16 12 C 0.13 1.74 11.15 84.53 0.94 2.68 16 13 C -0.20 -3.03 8.74 22.46 0.20 -2.84 16 14 C 0.17 4.03 4.70 39.05 0.18 4.21 16 15 N -0.54 -14.16 4.23 -743.66 -3.14 -17.30 16 16 C 0.03 0.65 9.29 127.69 1.19 1.84 16 17 C 0.04 0.91 9.33 127.69 1.19 2.10 16 18 C 0.13 4.86 5.04 86.36 0.44 5.29 16 19 C -0.09 -2.97 2.15 -10.72 -0.02 -2.99 16 20 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 21 C 0.16 6.64 5.19 86.38 0.45 7.09 16 22 N -0.75 -40.78 5.38 -343.45 -1.85 -42.62 16 23 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 24 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 25 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 26 N -0.97 -63.76 13.06 21.65 0.28 -63.48 16 27 Si 0.98 48.27 29.55 68.60 2.03 50.30 16 28 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 29 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 30 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 31 H 0.06 1.14 4.98 -2.39 -0.01 1.13 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.05 1.14 6.58 -2.39 -0.02 1.12 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.58 4.72 -2.39 -0.01 1.57 16 37 H 0.10 1.45 6.70 -2.39 -0.02 1.44 16 38 H 0.18 2.90 7.35 -2.91 -0.02 2.88 16 39 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.16 1.54 7.22 -2.91 -0.02 1.52 16 41 H 0.06 0.82 7.33 -2.38 -0.02 0.80 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.30 8.12 -2.38 -0.02 1.28 16 44 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 0.95 7.54 -2.39 -0.02 0.93 16 47 H 0.08 2.56 6.69 -2.39 -0.02 2.54 16 48 H 0.05 2.28 6.23 -2.39 -0.01 2.27 16 49 H 0.03 1.26 6.73 -2.38 -0.02 1.24 16 50 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.37 22.24 6.90 -92.71 -0.64 21.60 16 52 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -82.72 400.61 1.35 -81.38 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.29 Total: 34.77 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 8.26 Total: 14.37 kcal Atomic # 7 Polarization: -145.53 SS G_CDS: -9.17 Total: -154.69 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -82.72 1.35 -81.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133250290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.880 kcal (2) G-P(sol) polarization free energy of solvation -82.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds