Wall clock time and date at job start Wed Apr 1 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 C 1.50710 * 109.46921 * 119.99708 * 2 1 3 5 5 N 1.32155 * 120.53951 * 305.15674 * 4 2 1 6 6 C 1.31848 * 120.96971 * 180.28401 * 5 4 2 7 7 N 1.31882 * 122.09456 * 359.75321 * 6 5 4 8 8 C 1.32128 * 120.96892 * 359.96792 * 7 6 5 9 9 C 1.39924 * 120.53541 * 124.91253 * 4 2 1 10 10 C 1.47839 * 120.94272 * 359.97438 * 9 4 2 11 11 O 1.21555 * 119.99532 * 305.40640 * 10 9 4 12 12 N 1.34769 * 120.00211 * 125.40404 * 10 9 4 13 13 C 1.46937 * 120.63073 * 354.38843 * 12 10 9 14 14 C 1.53190 * 108.88839 * 233.67191 * 13 12 10 15 15 C 1.53042 * 109.31510 * 305.29064 * 14 13 12 16 16 H 1.08996 * 109.45647 * 301.34704 * 15 14 13 17 17 C 1.53003 * 109.45911 * 181.38688 * 15 14 13 18 18 C 1.53037 * 109.53589 * 61.36788 * 15 14 13 19 19 H 1.09006 * 109.50056 * 58.58806 * 18 15 14 20 20 C 1.53003 * 109.49810 * 178.64916 * 18 15 14 21 21 N 1.46503 * 109.47247 * 184.99776 * 20 18 15 22 22 C 1.36939 * 119.99703 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99981 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99675 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00310 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00185 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46609 * 60.00113 * 26 24 22 28 28 H 1.48494 * 109.47497 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46795 * 300.00531 * 26 24 22 30 30 C 1.47203 * 120.81760 * 174.52005 * 12 10 9 31 31 H 1.09009 * 109.46974 * 60.00239 * 1 2 3 32 32 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47448 * 300.00335 * 1 2 3 34 34 H 1.08999 * 109.47448 * 239.99665 * 2 1 3 35 35 H 1.09002 * 109.47151 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.46928 * 299.99936 * 3 2 1 37 37 H 1.09006 * 109.46776 * 60.00046 * 3 2 1 38 38 H 1.08005 * 118.95630 * 179.72137 * 6 5 4 39 39 H 1.08004 * 120.54492 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.58544 * 113.81441 * 13 12 10 41 41 H 1.08996 * 109.58082 * 353.52624 * 13 12 10 42 42 H 1.09006 * 109.50242 * 65.24540 * 14 13 12 43 43 H 1.08998 * 109.49668 * 185.33956 * 14 13 12 44 44 H 1.09000 * 109.47225 * 60.00367 * 17 15 14 45 45 H 1.08997 * 109.46714 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47194 * 300.00291 * 17 15 14 47 47 H 1.08994 * 109.47284 * 305.00450 * 20 18 15 48 48 H 1.09009 * 109.46619 * 65.00153 * 20 18 15 49 49 H 0.96995 * 120.00032 * 0.02562 * 21 20 18 50 50 H 0.96997 * 120.00418 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.53065 * 6.54079 * 30 12 10 52 52 H 1.08994 * 109.56715 * 246.16977 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 1.6381 -0.3302 2.4334 6 6 2.0765 -0.9421 3.5159 7 7 2.9173 -1.9563 3.4556 8 6 3.3586 -2.4055 2.2940 9 6 2.9195 -1.7865 1.1179 10 6 3.3847 -2.2527 -0.2057 11 8 2.5767 -2.5554 -1.0619 12 7 4.7046 -2.3421 -0.4630 13 6 5.6920 -1.8652 0.5150 14 6 6.6367 -0.8766 -0.1757 15 6 7.2498 -1.5410 -1.4106 16 1 7.7873 -2.4403 -1.1099 17 6 8.2204 -0.5684 -2.0836 18 6 6.1393 -1.9157 -2.3946 19 1 5.5856 -1.0202 -2.6767 20 6 6.7558 -2.5493 -3.6434 21 7 5.7055 -2.7985 -4.6339 22 6 6.0223 -3.3640 -5.8402 23 1 7.0463 -3.6266 -6.0611 24 6 5.0271 -3.6006 -6.7784 25 7 3.7790 -3.2810 -6.5089 26 14 5.4589 -4.3727 -8.4237 27 1 6.0654 -5.7095 -8.1991 28 1 4.2275 -4.5182 -9.2407 29 1 6.4274 -3.5036 -9.1392 30 6 5.1889 -2.9160 -1.7291 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8901 38 1 1.7366 -0.6015 4.4828 39 1 4.0475 -3.2363 2.2526 40 1 6.2639 -2.7100 0.8986 41 1 5.1797 -1.3668 1.3380 42 1 6.0784 0.0092 -0.4787 43 1 7.4300 -0.5889 0.5142 44 1 9.0122 -0.3024 -1.3833 45 1 8.6575 -1.0417 -2.9629 46 1 7.6835 0.3313 -2.3838 47 1 7.4994 -1.8728 -4.0646 48 1 7.2329 -3.4919 -3.3748 49 1 4.7859 -2.5623 -4.4355 50 1 3.0835 -3.4467 -7.1643 51 1 4.3428 -3.1105 -2.3883 52 1 5.7198 -3.8466 -1.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133317851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:42 Heat of formation + Delta-G solvation = 11.137853 kcal Electronic energy + Delta-G solvation = -31878.951899 eV Core-core repulsion = 27878.306755 eV Total energy + Delta-G solvation = -4000.645144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71758 -39.97673 -38.04602 -36.28469 -35.06640 -33.82741 -33.27944 -32.10532 -31.69180 -29.83165 -28.29798 -27.26948 -26.05860 -25.36132 -24.82878 -23.33181 -23.17088 -21.28861 -21.05447 -20.29840 -19.38792 -18.22078 -17.45033 -16.98209 -16.92687 -16.24218 -15.23164 -15.02427 -14.89845 -14.81953 -14.44677 -14.28275 -14.25743 -13.93560 -13.80113 -13.59118 -13.29404 -13.18920 -13.09079 -12.76024 -12.57197 -12.29749 -11.99290 -11.91623 -11.74427 -11.71557 -11.59771 -11.47079 -11.04991 -11.02643 -10.93234 -10.80855 -10.77787 -10.61406 -10.32741 -10.21765 -10.02539 -9.91521 -9.67193 -9.57636 -9.54104 -8.84882 -8.61793 -6.88263 -5.71302 -3.01130 0.30532 0.70053 2.50395 2.85523 3.40053 3.46328 3.50534 3.52093 3.67518 3.77971 4.00316 4.20677 4.55130 4.60164 4.63362 4.76911 4.81053 4.89517 4.91873 4.98450 5.08121 5.16464 5.18699 5.27903 5.46536 5.56387 5.56871 5.59530 5.63140 5.65678 5.69509 5.75041 5.75195 5.85146 5.86713 5.89866 5.97818 5.99858 6.10490 6.12020 6.18643 6.20237 6.28547 6.40617 6.49985 6.52059 6.60322 6.78361 6.86341 7.31141 7.70108 7.72512 8.04993 8.46367 9.57411 10.15052 10.49149 11.50799 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003122 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.711950 B = 8965.936117 C =10134.377768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.138 4.138 4 C 0.233 3.767 5 N -0.513 5.513 6 C 0.306 3.694 7 N -0.525 5.525 8 C 0.181 3.819 9 C -0.227 4.227 10 C 0.565 3.435 11 O -0.510 6.510 12 N -0.602 5.602 13 C 0.104 3.896 14 C -0.127 4.127 15 C -0.084 4.084 16 H 0.072 0.928 17 C -0.148 4.148 18 C -0.101 4.101 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.120 3.880 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.200 0.800 39 H 0.172 0.828 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.018 0.982 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.106 0.894 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 7.992 22.188 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 C -0.196 4.196 4 C 0.086 3.914 5 N -0.227 5.227 6 C 0.019 3.981 7 N -0.238 5.238 8 C 0.014 3.986 9 C -0.234 4.234 10 C 0.350 3.650 11 O -0.386 6.386 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.166 4.166 15 C -0.103 4.103 16 H 0.091 0.909 17 C -0.205 4.205 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.001 4.001 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.216 0.784 39 H 0.189 0.811 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.125 0.875 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.941 8.059 22.484 23.903 hybrid contribution 0.297 -0.741 -1.485 1.686 sum 1.238 7.318 20.998 22.271 Atomic orbital electron populations 1.21703 0.92596 1.02382 1.02554 1.20461 0.97810 0.96547 0.93360 1.21777 1.00795 0.94168 1.02879 1.21849 0.86878 0.88759 0.93930 1.68272 1.25217 1.30644 0.98536 1.25165 0.88277 0.86994 0.97643 1.68448 1.13065 1.13954 1.28345 1.23436 0.93125 0.95820 0.86203 1.21699 1.03585 1.01596 0.96564 1.17836 0.82602 0.78373 0.86155 1.90888 1.53147 1.48367 1.46169 1.48189 1.04608 1.61022 1.19638 1.21826 0.90867 0.98009 0.91210 1.21971 0.98542 0.98384 0.97663 1.21096 0.96067 0.98739 0.94427 0.90947 1.21878 0.98549 0.99295 1.00782 1.21713 0.95689 0.99124 0.95554 0.90679 1.20720 0.92131 0.96428 0.87632 1.42403 1.06029 1.74809 1.14505 1.19140 0.93500 1.32793 0.91975 0.91324 1.24743 0.95406 1.02027 0.98613 1.69657 0.99430 1.53201 1.35437 0.86301 0.76844 0.79149 0.84058 1.21306 1.21707 1.21343 1.21876 0.99569 0.95246 0.83401 0.91554 0.92551 0.91706 0.87564 0.92928 0.91294 0.91726 0.78370 0.81067 0.90887 0.90764 0.91485 0.90740 0.93215 0.91528 0.92761 0.95477 0.96376 0.78119 0.93434 0.87544 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.06 37.15 0.34 -1.18 16 2 C -0.06 -0.77 3.00 -91.77 -0.28 -1.04 16 3 C -0.14 -1.43 9.15 37.16 0.34 -1.09 16 4 C 0.23 2.84 5.52 -81.82 -0.45 2.39 16 5 N -0.51 -5.67 9.99 -10.48 -0.10 -5.77 16 6 C 0.31 2.86 12.27 -92.03 -1.13 1.73 16 7 N -0.52 -5.33 10.42 -14.24 -0.15 -5.48 16 8 C 0.18 1.86 9.12 -16.77 -0.15 1.71 16 9 C -0.23 -2.79 4.60 -104.69 -0.48 -3.27 16 10 C 0.57 8.35 6.40 -12.34 -0.08 8.27 16 11 O -0.51 -9.73 14.91 5.32 0.08 -9.65 16 12 N -0.60 -7.87 2.98 -173.66 -0.52 -8.39 16 13 C 0.10 0.99 5.65 -3.71 -0.02 0.97 16 14 C -0.13 -1.21 5.36 -26.61 -0.14 -1.35 16 15 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 18 C -0.10 -1.55 1.92 -90.50 -0.17 -1.73 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 21 N -0.73 -18.39 5.38 -59.91 -0.32 -18.71 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 C 0.12 1.89 5.54 -3.56 -0.02 1.87 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 34 H 0.11 1.58 5.55 -51.93 -0.29 1.29 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.17 1.39 7.84 -52.48 -0.41 0.97 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.65 5.39 -51.93 -0.28 0.37 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 48 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 49 H 0.38 10.35 6.90 -40.82 -0.28 10.07 16 50 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 51 H 0.11 2.12 6.23 -51.93 -0.32 1.80 16 52 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -33.15 407.66 -10.10 -43.24 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.53 Total: 8.43 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.39 Total: 0.44 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -0.37 Total: -66.17 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.15 -10.10 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133317851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.382 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds