Wall clock time and date at job start Wed Apr 1 2020 03:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 C 1.50710 * 109.46921 * 119.99708 * 2 1 3 5 5 N 1.32155 * 120.53951 * 305.15674 * 4 2 1 6 6 C 1.31848 * 120.96971 * 180.28401 * 5 4 2 7 7 N 1.31882 * 122.09456 * 359.75321 * 6 5 4 8 8 C 1.32128 * 120.96892 * 359.96792 * 7 6 5 9 9 C 1.39924 * 120.53541 * 124.91253 * 4 2 1 10 10 C 1.47839 * 120.94272 * 359.97438 * 9 4 2 11 11 O 1.21555 * 119.99532 * 305.40640 * 10 9 4 12 12 N 1.34769 * 120.00211 * 125.40404 * 10 9 4 13 13 C 1.46937 * 120.63073 * 354.38843 * 12 10 9 14 14 C 1.53190 * 108.88839 * 233.67191 * 13 12 10 15 15 C 1.53042 * 109.31510 * 305.29064 * 14 13 12 16 16 H 1.08996 * 109.45647 * 301.34704 * 15 14 13 17 17 C 1.53003 * 109.45911 * 181.38688 * 15 14 13 18 18 C 1.53037 * 109.53589 * 61.36788 * 15 14 13 19 19 H 1.09006 * 109.50056 * 58.58806 * 18 15 14 20 20 C 1.53003 * 109.49810 * 178.64916 * 18 15 14 21 21 N 1.46503 * 109.47247 * 184.99776 * 20 18 15 22 22 C 1.36939 * 119.99703 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99981 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99675 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00310 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00185 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46609 * 60.00113 * 26 24 22 28 28 H 1.48494 * 109.47497 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46795 * 300.00531 * 26 24 22 30 30 C 1.47203 * 120.81760 * 174.52005 * 12 10 9 31 31 H 1.09009 * 109.46974 * 60.00239 * 1 2 3 32 32 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47448 * 300.00335 * 1 2 3 34 34 H 1.08999 * 109.47448 * 239.99665 * 2 1 3 35 35 H 1.09002 * 109.47151 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.46928 * 299.99936 * 3 2 1 37 37 H 1.09006 * 109.46776 * 60.00046 * 3 2 1 38 38 H 1.08005 * 118.95630 * 179.72137 * 6 5 4 39 39 H 1.08004 * 120.54492 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.58544 * 113.81441 * 13 12 10 41 41 H 1.08996 * 109.58082 * 353.52624 * 13 12 10 42 42 H 1.09006 * 109.50242 * 65.24540 * 14 13 12 43 43 H 1.08998 * 109.49668 * 185.33956 * 14 13 12 44 44 H 1.09000 * 109.47225 * 60.00367 * 17 15 14 45 45 H 1.08997 * 109.46714 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47194 * 300.00291 * 17 15 14 47 47 H 1.08994 * 109.47284 * 305.00450 * 20 18 15 48 48 H 1.09009 * 109.46619 * 65.00153 * 20 18 15 49 49 H 0.96995 * 120.00032 * 0.02562 * 21 20 18 50 50 H 0.96997 * 120.00418 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.53065 * 6.54079 * 30 12 10 52 52 H 1.08994 * 109.56715 * 246.16977 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 1.6381 -0.3302 2.4334 6 6 2.0765 -0.9421 3.5159 7 7 2.9173 -1.9563 3.4556 8 6 3.3586 -2.4055 2.2940 9 6 2.9195 -1.7865 1.1179 10 6 3.3847 -2.2527 -0.2057 11 8 2.5767 -2.5554 -1.0619 12 7 4.7046 -2.3421 -0.4630 13 6 5.6920 -1.8652 0.5150 14 6 6.6367 -0.8766 -0.1757 15 6 7.2498 -1.5410 -1.4106 16 1 7.7873 -2.4403 -1.1099 17 6 8.2204 -0.5684 -2.0836 18 6 6.1393 -1.9157 -2.3946 19 1 5.5856 -1.0202 -2.6767 20 6 6.7558 -2.5493 -3.6434 21 7 5.7055 -2.7985 -4.6339 22 6 6.0223 -3.3640 -5.8402 23 1 7.0463 -3.6266 -6.0611 24 6 5.0271 -3.6006 -6.7784 25 7 3.7790 -3.2810 -6.5089 26 14 5.4589 -4.3727 -8.4237 27 1 6.0654 -5.7095 -8.1991 28 1 4.2275 -4.5182 -9.2407 29 1 6.4274 -3.5036 -9.1392 30 6 5.1889 -2.9160 -1.7291 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8901 38 1 1.7366 -0.6015 4.4828 39 1 4.0475 -3.2363 2.2526 40 1 6.2639 -2.7100 0.8986 41 1 5.1797 -1.3668 1.3380 42 1 6.0784 0.0092 -0.4787 43 1 7.4300 -0.5889 0.5142 44 1 9.0122 -0.3024 -1.3833 45 1 8.6575 -1.0417 -2.9629 46 1 7.6835 0.3313 -2.3838 47 1 7.4994 -1.8728 -4.0646 48 1 7.2329 -3.4919 -3.3748 49 1 4.7859 -2.5623 -4.4355 50 1 3.0835 -3.4467 -7.1643 51 1 4.3428 -3.1105 -2.3883 52 1 5.7198 -3.8466 -1.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133317851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:41 Heat of formation + Delta-G solvation = -9.217112 kcal Electronic energy + Delta-G solvation = -31879.834557 eV Core-core repulsion = 27878.306755 eV Total energy + Delta-G solvation = -4001.527802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.61540 -41.04165 -39.22888 -37.20771 -36.61693 -35.21442 -34.14825 -33.53930 -32.82492 -31.40587 -29.33371 -28.16077 -27.52880 -26.28367 -25.90297 -24.92149 -24.24117 -22.61369 -21.95870 -21.47495 -20.46638 -19.20858 -19.00955 -18.36011 -17.76457 -17.38375 -16.74414 -16.27744 -15.95116 -15.82050 -15.60488 -15.47187 -15.39670 -15.11923 -15.09993 -14.61954 -14.40969 -14.32722 -14.19749 -14.10409 -14.03954 -13.16637 -13.11568 -13.05292 -12.87964 -12.75763 -12.68338 -12.60138 -12.59393 -12.39021 -12.22065 -12.05932 -12.02286 -11.89245 -11.76468 -11.63365 -11.32940 -11.20059 -11.02347 -10.90074 -10.61336 -10.38693 -9.74384 -8.98135 -7.93164 -5.23148 -0.54354 -0.14860 1.39782 1.45539 1.49311 1.55545 1.78809 2.56103 2.56941 2.83415 3.04803 3.16418 3.26777 3.39644 3.64428 3.71548 3.75620 3.83491 3.97297 3.99685 4.06219 4.09210 4.21895 4.24088 4.36377 4.39556 4.50263 4.55393 4.58147 4.70323 4.72719 4.76877 4.80675 4.81663 4.84047 4.90643 4.96498 5.01595 5.04871 5.11597 5.14012 5.20402 5.23620 5.26055 5.30561 5.39222 5.48476 5.49289 5.57272 5.73763 6.23688 6.27294 6.89402 6.93664 7.33068 8.10305 8.31811 9.29892 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003122 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.711950 B = 8965.936117 C =10134.377768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.131 4.131 4 C 0.226 3.774 5 N -0.520 5.520 6 C 0.312 3.688 7 N -0.526 5.526 8 C 0.194 3.806 9 C -0.243 4.243 10 C 0.564 3.436 11 O -0.568 6.568 12 N -0.595 5.595 13 C 0.100 3.900 14 C -0.121 4.121 15 C -0.077 4.077 16 H 0.090 0.910 17 C -0.146 4.146 18 C -0.088 4.088 19 H 0.048 0.952 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.974 3.026 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.276 1.276 30 C 0.128 3.872 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.238 0.762 39 H 0.195 0.805 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.026 0.974 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.054 0.946 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 8.455 25.223 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 C -0.188 4.188 4 C 0.080 3.920 5 N -0.234 5.234 6 C 0.026 3.974 7 N -0.240 5.240 8 C 0.027 3.973 9 C -0.251 4.251 10 C 0.351 3.649 11 O -0.448 6.448 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.159 4.159 15 C -0.096 4.096 16 H 0.108 0.892 17 C -0.203 4.203 18 C -0.107 4.107 19 H 0.067 0.933 20 C 0.031 3.969 21 N -0.390 5.390 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.202 1.202 30 C 0.005 3.995 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.212 0.788 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.044 0.956 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.367 8.542 25.573 27.171 hybrid contribution -0.389 -0.863 -2.334 2.519 sum 2.978 7.679 23.239 24.655 Atomic orbital electron populations 1.21663 0.92073 1.01516 1.03439 1.20394 0.98293 0.97390 0.92490 1.21721 1.00568 0.92943 1.03590 1.21811 0.86910 0.88922 0.94382 1.68335 1.25548 1.31171 0.98314 1.25975 0.86957 0.85981 0.98459 1.68586 1.13410 1.14228 1.27752 1.23763 0.92639 0.95571 0.85336 1.21480 1.05104 1.02751 0.95728 1.18254 0.82581 0.77430 0.86632 1.90859 1.54714 1.50954 1.48228 1.48211 1.04975 1.60220 1.19239 1.22165 0.90249 0.99253 0.90493 1.21960 0.99232 0.97516 0.97200 1.21082 0.94601 0.99849 0.94062 0.89204 1.21854 0.99005 0.98521 1.00901 1.21551 0.96689 0.97386 0.95102 0.93297 1.20918 0.90987 0.96979 0.88034 1.42665 1.06663 1.74611 1.15086 1.19616 0.93815 1.31419 0.92824 0.90331 1.25616 0.95339 1.03540 1.02511 1.69853 1.00484 1.55334 1.36466 0.85205 0.76335 0.78629 0.79551 1.20202 1.22455 1.20188 1.21550 0.97720 0.96106 0.84082 0.91009 0.94248 0.90383 0.91018 0.93166 0.90946 0.90548 0.74640 0.78786 0.87918 0.89405 0.92771 0.87080 0.90254 0.93040 0.93755 0.94934 0.95598 0.79812 0.94193 0.92690 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.06 71.98 0.65 -2.38 16 2 C -0.07 -1.70 3.00 -11.54 -0.03 -1.74 16 3 C -0.13 -2.71 9.15 71.98 0.66 -2.05 16 4 C 0.23 5.48 5.52 42.92 0.24 5.72 16 5 N -0.52 -10.56 9.99 -187.06 -1.87 -12.43 16 6 C 0.31 4.90 12.27 180.84 2.22 7.12 16 7 N -0.53 -9.09 10.42 -198.97 -2.07 -11.16 16 8 C 0.19 3.55 9.12 85.07 0.78 4.33 16 9 C -0.24 -5.90 4.60 -19.91 -0.09 -5.99 16 10 C 0.56 17.46 6.40 86.79 0.56 18.01 16 11 O -0.57 -23.77 14.91 -3.89 -0.06 -23.83 16 12 N -0.60 -15.64 2.98 -821.61 -2.45 -18.09 16 13 C 0.10 1.62 5.65 86.36 0.49 2.10 16 14 C -0.12 -1.93 5.36 30.67 0.16 -1.77 16 15 C -0.08 -1.60 2.23 -10.77 -0.02 -1.62 16 16 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 17 C -0.15 -2.92 8.82 71.98 0.63 -2.29 16 18 C -0.09 -2.74 1.92 -10.72 -0.02 -2.76 16 19 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 20 C 0.16 6.14 5.41 86.38 0.47 6.61 16 21 N -0.75 -39.13 5.38 -343.45 -1.85 -40.97 16 22 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 24 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 25 N -0.97 -62.36 13.06 21.65 0.28 -62.07 16 26 Si 0.97 47.38 29.55 68.60 2.03 49.40 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 29 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 30 C 0.13 4.19 5.54 86.31 0.48 4.66 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.59 7.98 -2.39 -0.02 1.57 16 34 H 0.07 2.36 5.55 -2.39 -0.01 2.35 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.20 2.54 7.84 -2.91 -0.02 2.51 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.25 5.39 -2.39 -0.01 1.24 16 42 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.19 6.29 -2.39 -0.02 1.17 16 46 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.03 1.26 6.14 -2.39 -0.01 1.25 16 48 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.37 21.34 6.90 -92.71 -0.64 20.70 16 50 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 51 H 0.05 2.40 6.23 -2.39 -0.01 2.39 16 52 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -77.20 407.66 2.76 -74.45 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.28 Total: 34.07 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 8.47 Total: 10.64 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -7.96 Total: -144.73 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -77.20 2.76 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133317851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.230 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds