Wall clock time and date at job start Wed Apr 1 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.45706 * 2 1 4 4 C 1.53039 * 109.44691 * 240.03383 * 2 1 3 5 5 C 1.53191 * 109.30999 * 178.62176 * 4 2 1 6 6 N 1.46929 * 108.77734 * 54.63505 * 5 4 2 7 7 C 1.34776 * 120.63269 * 126.36365 * 6 5 4 8 8 O 1.21600 * 120.00207 * 176.09403 * 7 6 5 9 9 C 1.47425 * 119.99839 * 356.10245 * 7 6 5 10 10 C 1.39970 * 120.61319 * 53.27176 * 9 7 6 11 11 C 1.38338 * 118.37259 * 179.80101 * 10 9 7 12 12 C 1.38378 * 119.50708 * 0.43739 * 11 10 9 13 13 N 1.31851 * 121.21469 * 359.80674 * 12 11 10 14 14 C 1.32429 * 121.77367 * 359.97438 * 13 12 11 15 15 N 1.38271 * 119.82245 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00043 * 304.24333 * 15 14 13 17 17 C 1.46898 * 111.00012 * 68.19939 * 15 14 13 18 18 C 1.46925 * 118.73870 * 306.39293 * 6 5 4 19 19 C 1.53038 * 109.45764 * 119.97137 * 2 1 3 20 20 H 1.09006 * 109.49529 * 61.41929 * 19 2 1 21 21 C 1.53001 * 109.49964 * 301.35459 * 19 2 1 22 22 N 1.46496 * 109.46859 * 175.06367 * 21 19 2 23 23 C 1.36941 * 119.99954 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99713 * 0.02562 * 23 22 21 25 25 C 1.38809 * 120.00455 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00298 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99725 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46941 * 90.00328 * 27 25 23 29 29 H 1.48496 * 109.47297 * 210.00306 * 27 25 23 30 30 H 1.48500 * 109.47503 * 330.00370 * 27 25 23 31 31 H 1.08997 * 109.46571 * 300.02960 * 1 2 3 32 32 H 1.09004 * 109.46721 * 60.03034 * 1 2 3 33 33 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.49884 * 298.57293 * 4 2 1 35 35 H 1.09000 * 109.50055 * 58.67271 * 4 2 1 36 36 H 1.09006 * 109.58405 * 174.42034 * 5 4 2 37 37 H 1.08996 * 109.59058 * 294.70451 * 5 4 2 38 38 H 1.08008 * 120.81664 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.24999 * 180.22004 * 11 10 9 40 40 H 1.07997 * 119.39186 * 179.78773 * 12 11 10 41 41 H 1.08998 * 109.47431 * 59.99707 * 16 15 14 42 42 H 1.08995 * 109.47297 * 180.02562 * 16 15 14 43 43 H 1.09005 * 109.46766 * 299.99800 * 16 15 14 44 44 H 1.08991 * 109.47100 * 55.00711 * 17 15 14 45 45 H 1.08999 * 109.46888 * 175.00917 * 17 15 14 46 46 H 1.09005 * 109.46582 * 295.00414 * 17 15 14 47 47 H 1.09007 * 109.58513 * 293.82007 * 18 6 5 48 48 H 1.08995 * 109.58902 * 173.39425 * 18 6 5 49 49 H 1.08993 * 109.47219 * 295.06648 * 21 19 2 50 50 H 1.09003 * 109.47124 * 55.06621 * 21 19 2 51 51 H 0.96999 * 120.00248 * 0.02562 * 22 21 19 52 52 H 0.96991 * 119.99714 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2493 -0.0003 7 6 4.9610 -2.2585 -0.0004 8 8 5.4180 -2.6661 1.0501 9 6 5.3841 -2.8682 -1.2742 10 6 5.8781 -2.0736 -2.3153 11 6 6.2658 -2.6946 -3.4891 12 6 6.1476 -4.0685 -3.6046 13 7 5.6751 -4.7993 -2.6141 14 6 5.2936 -4.2571 -1.4677 15 7 4.8044 -5.0619 -0.4554 16 6 3.6677 -5.8655 -0.9245 17 6 5.8635 -5.9187 0.0943 18 6 3.5714 -0.6891 1.2640 19 6 2.0399 -0.7209 1.2500 20 1 1.6976 -1.7557 1.2382 21 6 1.5024 -0.0194 2.4990 22 7 1.8927 -0.7770 3.6906 23 6 1.5211 -0.3379 4.9333 24 1 0.9399 0.5668 5.0348 25 6 1.8912 -1.0554 6.0624 26 7 1.5336 -0.6336 7.2568 27 14 2.8957 -2.6205 5.8867 28 1 4.3423 -2.2875 5.9284 29 1 2.5686 -3.5463 7.0006 30 1 2.5749 -3.2719 4.5913 31 1 -0.3632 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6974 -1.7556 -1.2384 35 1 1.6570 -0.2207 -2.1399 36 1 3.9412 -1.2850 -2.0988 37 1 3.9143 0.3402 -1.3701 38 1 5.9573 -1.0022 -2.2040 39 1 6.6546 -2.1112 -4.3106 40 1 6.4476 -4.5510 -4.5230 41 1 3.9875 -6.4995 -1.7514 42 1 3.3020 -6.4888 -0.1086 43 1 2.8696 -5.2038 -1.2616 44 1 6.7005 -5.2998 0.4173 45 1 5.4741 -6.4765 0.9460 46 1 6.2016 -6.6157 -0.6726 47 1 3.9146 0.3404 1.3671 48 1 3.9417 -1.2851 2.0981 49 1 1.9163 0.9873 2.5568 50 1 0.4152 0.0373 2.4444 51 1 2.4143 -1.5897 3.5993 52 1 1.7926 -1.1348 8.0458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133323489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:11 Heat of formation + Delta-G solvation = 35.710096 kcal Electronic energy + Delta-G solvation = -32138.085424 eV Core-core repulsion = 28138.505812 eV Total energy + Delta-G solvation = -3999.579612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27629 -39.79580 -37.84606 -37.16697 -35.13339 -33.82359 -32.88689 -31.85829 -30.96462 -30.15640 -28.28141 -27.76905 -26.16389 -25.24384 -24.80679 -23.07576 -22.91107 -21.89771 -21.10378 -20.31982 -19.37349 -17.70167 -17.44067 -17.23692 -17.06682 -16.15207 -15.46013 -15.35177 -14.96353 -14.85095 -14.47116 -14.37866 -14.20795 -14.01976 -13.77462 -13.61606 -13.36256 -13.26533 -13.07756 -12.89909 -12.58358 -12.48408 -12.39771 -12.17389 -11.98283 -11.87134 -11.79828 -11.66719 -11.23882 -10.99277 -10.84125 -10.63457 -10.34806 -10.30169 -10.19819 -10.06905 -9.98828 -9.64560 -9.49342 -9.31052 -8.81613 -8.79411 -8.54025 -7.14419 -5.69603 -3.04698 0.46484 0.74673 2.67747 2.95180 3.34259 3.40557 3.49724 3.54923 3.58458 4.04569 4.34835 4.40342 4.60837 4.65729 4.69108 4.73759 4.78671 4.79464 5.02145 5.08427 5.11350 5.19707 5.20109 5.29980 5.37589 5.39565 5.55134 5.55944 5.58648 5.62570 5.63538 5.65342 5.69032 5.74023 5.79477 5.79956 5.88374 5.89132 5.99468 6.05215 6.14833 6.27831 6.38088 6.40556 6.55744 6.59027 6.75736 6.82255 6.99430 7.38576 7.50456 8.06364 8.23336 8.49573 9.29128 10.02150 10.21525 11.48702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003746 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.230594 B = 7473.209940 C = 9012.737024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.101 3.899 6 N -0.606 5.606 7 C 0.571 3.429 8 O -0.509 6.509 9 C -0.144 4.144 10 C -0.046 4.046 11 C -0.182 4.182 12 C 0.126 3.874 13 N -0.513 5.513 14 C 0.339 3.661 15 N -0.490 5.490 16 C 0.030 3.970 17 C 0.038 3.962 18 C 0.122 3.878 19 C -0.106 4.106 20 H 0.074 0.926 21 C 0.163 3.837 22 N -0.757 5.757 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.936 5.936 27 Si 0.881 3.119 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.275 1.275 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.027 0.973 50 H 0.035 0.965 51 H 0.362 0.638 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -3.959 -28.899 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.022 4.022 6 N -0.340 5.340 7 C 0.357 3.643 8 O -0.383 6.383 9 C -0.151 4.151 10 C -0.072 4.072 11 C -0.202 4.202 12 C -0.033 4.033 13 N -0.225 5.225 14 C 0.110 3.890 15 N -0.213 5.213 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.000 4.000 19 C -0.125 4.125 20 H 0.092 0.908 21 C 0.036 3.964 22 N -0.403 5.403 23 C -0.373 4.373 24 H 0.107 0.893 25 C -0.190 4.190 26 N -0.584 5.584 27 Si 0.711 3.289 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.201 1.201 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.116 0.884 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.195 0.805 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.003 -4.670 -27.816 29.062 hybrid contribution 0.990 -0.724 -0.613 1.371 sum 7.993 -5.394 -28.429 30.020 Atomic orbital electron populations 1.21889 0.94817 1.01988 1.01874 1.21073 0.96079 0.99369 0.93676 0.90872 1.21975 0.94520 1.01591 0.98515 1.21930 0.95064 0.99005 0.86234 1.48052 1.43088 1.35129 1.07743 1.17737 0.79451 0.79027 0.88092 1.90832 1.54446 1.60936 1.32109 1.20708 1.04527 0.93865 0.96030 1.21775 0.93507 1.00509 0.91433 1.22065 1.02885 0.96323 0.98911 1.22740 0.93011 0.90987 0.96603 1.67856 1.11985 1.41177 1.01461 1.19734 0.91206 0.89806 0.88238 1.59826 1.09168 1.24305 1.27984 1.22399 0.92180 0.96918 1.00213 1.22348 0.93693 0.95548 0.99269 1.21724 0.93699 0.99153 0.85386 1.21773 0.94455 1.00867 0.95444 0.90759 1.20700 0.97346 0.94072 0.84312 1.42780 1.66201 1.28715 1.02560 1.19035 1.28497 1.07886 0.81869 0.89258 1.24643 1.00590 0.98654 0.95105 1.69706 1.50910 1.40745 0.97015 0.86595 0.80856 0.84442 0.76993 1.20877 1.21823 1.20148 0.91450 0.93153 0.92809 0.91581 0.90852 0.90038 0.91140 0.83829 0.83955 0.82402 0.93777 0.90394 0.91592 0.90950 0.90280 0.94423 0.91186 0.88441 0.95510 0.94726 0.80484 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 2 C -0.08 -0.95 2.23 -90.57 -0.20 -1.16 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.21 5.36 -26.61 -0.14 -1.36 16 5 C 0.10 0.95 5.53 -3.71 -0.02 0.93 16 6 N -0.61 -8.21 2.97 -174.03 -0.52 -8.73 16 7 C 0.57 8.82 6.86 -12.52 -0.09 8.73 16 8 O -0.51 -10.07 16.11 5.28 0.09 -9.99 16 9 C -0.14 -1.79 4.93 -104.65 -0.52 -2.31 16 10 C -0.05 -0.39 7.54 -38.90 -0.29 -0.69 16 11 C -0.18 -1.20 10.09 -39.49 -0.40 -1.60 16 12 C 0.13 0.99 11.16 -17.49 -0.20 0.80 16 13 N -0.51 -5.72 9.57 -12.20 -0.12 -5.84 16 14 C 0.34 4.35 5.32 -155.18 -0.83 3.53 16 15 N -0.49 -6.69 4.07 -188.75 -0.77 -7.46 16 16 C 0.03 0.34 9.40 60.06 0.56 0.90 16 17 C 0.04 0.47 9.46 60.06 0.57 1.04 16 18 C 0.12 1.94 5.51 -3.71 -0.02 1.92 16 19 C -0.11 -1.63 1.92 -90.50 -0.17 -1.80 16 20 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 21 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16 22 N -0.76 -18.54 5.18 -59.91 -0.31 -18.85 16 23 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 24 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 26 N -0.94 -30.19 13.97 55.49 0.78 -29.42 16 27 Si 0.88 23.57 27.74 -169.99 -4.71 18.85 16 28 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 30 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 31 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.67 4.70 -51.93 -0.24 0.42 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.14 0.94 7.36 -52.48 -0.39 0.56 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.04 0.42 8.10 -51.93 -0.42 0.00 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 1.92 6.23 -51.93 -0.32 1.60 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16 51 H 0.36 8.98 4.76 -40.82 -0.19 8.79 16 52 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -36.34 405.48 -9.69 -46.03 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.55 Total: 5.72 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.69 Total: 3.57 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.94 Total: -70.30 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.71 Total: 18.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.34 -9.69 -46.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133323489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.744 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds