Wall clock time and date at job start Wed Apr 1 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.45706 * 2 1 4 4 C 1.53039 * 109.44691 * 240.03383 * 2 1 3 5 5 C 1.53191 * 109.30999 * 178.62176 * 4 2 1 6 6 N 1.46929 * 108.77734 * 54.63505 * 5 4 2 7 7 C 1.34776 * 120.63269 * 126.36365 * 6 5 4 8 8 O 1.21600 * 120.00207 * 176.09403 * 7 6 5 9 9 C 1.47425 * 119.99839 * 356.10245 * 7 6 5 10 10 C 1.39970 * 120.61319 * 53.27176 * 9 7 6 11 11 C 1.38338 * 118.37259 * 179.80101 * 10 9 7 12 12 C 1.38378 * 119.50708 * 0.43739 * 11 10 9 13 13 N 1.31851 * 121.21469 * 359.80674 * 12 11 10 14 14 C 1.32429 * 121.77367 * 359.97438 * 13 12 11 15 15 N 1.38271 * 119.82245 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00043 * 304.24333 * 15 14 13 17 17 C 1.46898 * 111.00012 * 68.19939 * 15 14 13 18 18 C 1.46925 * 118.73870 * 306.39293 * 6 5 4 19 19 C 1.53038 * 109.45764 * 119.97137 * 2 1 3 20 20 H 1.09006 * 109.49529 * 61.41929 * 19 2 1 21 21 C 1.53001 * 109.49964 * 301.35459 * 19 2 1 22 22 N 1.46496 * 109.46859 * 175.06367 * 21 19 2 23 23 C 1.36941 * 119.99954 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99713 * 0.02562 * 23 22 21 25 25 C 1.38809 * 120.00455 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00298 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99725 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46941 * 90.00328 * 27 25 23 29 29 H 1.48496 * 109.47297 * 210.00306 * 27 25 23 30 30 H 1.48500 * 109.47503 * 330.00370 * 27 25 23 31 31 H 1.08997 * 109.46571 * 300.02960 * 1 2 3 32 32 H 1.09004 * 109.46721 * 60.03034 * 1 2 3 33 33 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.49884 * 298.57293 * 4 2 1 35 35 H 1.09000 * 109.50055 * 58.67271 * 4 2 1 36 36 H 1.09006 * 109.58405 * 174.42034 * 5 4 2 37 37 H 1.08996 * 109.59058 * 294.70451 * 5 4 2 38 38 H 1.08008 * 120.81664 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.24999 * 180.22004 * 11 10 9 40 40 H 1.07997 * 119.39186 * 179.78773 * 12 11 10 41 41 H 1.08998 * 109.47431 * 59.99707 * 16 15 14 42 42 H 1.08995 * 109.47297 * 180.02562 * 16 15 14 43 43 H 1.09005 * 109.46766 * 299.99800 * 16 15 14 44 44 H 1.08991 * 109.47100 * 55.00711 * 17 15 14 45 45 H 1.08999 * 109.46888 * 175.00917 * 17 15 14 46 46 H 1.09005 * 109.46582 * 295.00414 * 17 15 14 47 47 H 1.09007 * 109.58513 * 293.82007 * 18 6 5 48 48 H 1.08995 * 109.58902 * 173.39425 * 18 6 5 49 49 H 1.08993 * 109.47219 * 295.06648 * 21 19 2 50 50 H 1.09003 * 109.47124 * 55.06621 * 21 19 2 51 51 H 0.96999 * 120.00248 * 0.02562 * 22 21 19 52 52 H 0.96991 * 119.99714 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2493 -0.0003 7 6 4.9610 -2.2585 -0.0004 8 8 5.4180 -2.6661 1.0501 9 6 5.3841 -2.8682 -1.2742 10 6 5.8781 -2.0736 -2.3153 11 6 6.2658 -2.6946 -3.4891 12 6 6.1476 -4.0685 -3.6046 13 7 5.6751 -4.7993 -2.6141 14 6 5.2936 -4.2571 -1.4677 15 7 4.8044 -5.0619 -0.4554 16 6 3.6677 -5.8655 -0.9245 17 6 5.8635 -5.9187 0.0943 18 6 3.5714 -0.6891 1.2640 19 6 2.0399 -0.7209 1.2500 20 1 1.6976 -1.7557 1.2382 21 6 1.5024 -0.0194 2.4990 22 7 1.8927 -0.7770 3.6906 23 6 1.5211 -0.3379 4.9333 24 1 0.9399 0.5668 5.0348 25 6 1.8912 -1.0554 6.0624 26 7 1.5336 -0.6336 7.2568 27 14 2.8957 -2.6205 5.8867 28 1 4.3423 -2.2875 5.9284 29 1 2.5686 -3.5463 7.0006 30 1 2.5749 -3.2719 4.5913 31 1 -0.3632 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6974 -1.7556 -1.2384 35 1 1.6570 -0.2207 -2.1399 36 1 3.9412 -1.2850 -2.0988 37 1 3.9143 0.3402 -1.3701 38 1 5.9573 -1.0022 -2.2040 39 1 6.6546 -2.1112 -4.3106 40 1 6.4476 -4.5510 -4.5230 41 1 3.9875 -6.4995 -1.7514 42 1 3.3020 -6.4888 -0.1086 43 1 2.8696 -5.2038 -1.2616 44 1 6.7005 -5.2998 0.4173 45 1 5.4741 -6.4765 0.9460 46 1 6.2016 -6.6157 -0.6726 47 1 3.9146 0.3404 1.3671 48 1 3.9417 -1.2851 2.0981 49 1 1.9163 0.9873 2.5568 50 1 0.4152 0.0373 2.4444 51 1 2.4143 -1.5897 3.5993 52 1 1.7926 -1.1348 8.0458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133323489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:09 Heat of formation + Delta-G solvation = 10.666471 kcal Electronic energy + Delta-G solvation = -32139.171397 eV Core-core repulsion = 28138.505812 eV Total energy + Delta-G solvation = -4000.665585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.12911 -40.79432 -39.03250 -37.99868 -36.75076 -35.17416 -33.76733 -33.57816 -31.91429 -31.53983 -29.28758 -28.69344 -27.65918 -26.13451 -25.69967 -24.64387 -23.92654 -22.76364 -22.52720 -21.47647 -20.39630 -19.63887 -18.38714 -18.18380 -17.92711 -17.21398 -16.74408 -16.40446 -16.10164 -16.00996 -15.87773 -15.43503 -15.43135 -15.08698 -14.96269 -14.67893 -14.42811 -14.38628 -14.22907 -14.15373 -13.91398 -13.56483 -13.39361 -13.28642 -13.19102 -13.04852 -12.88059 -12.82639 -12.66227 -12.63307 -12.22971 -12.06683 -11.88969 -11.80009 -11.36464 -11.25145 -11.20028 -11.01397 -10.86167 -10.59168 -10.05513 -9.70512 -9.60700 -9.29818 -8.07283 -5.38179 -0.26839 0.09318 1.31545 1.35609 1.40390 1.60445 1.97219 2.42103 2.55922 2.64629 3.25134 3.29558 3.49749 3.58810 3.75794 3.81810 3.86796 3.95756 3.99681 4.02218 4.09079 4.25320 4.27099 4.31163 4.35911 4.45300 4.48215 4.52832 4.55162 4.57700 4.73843 4.77278 4.78945 4.80527 4.81269 4.92780 4.94592 4.95319 5.03844 5.06540 5.11084 5.20891 5.24877 5.41868 5.44063 5.53245 5.56734 5.69933 5.73477 6.15438 6.18318 6.37614 6.79283 7.04181 7.13584 7.82225 7.98557 9.14461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003746 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.230594 B = 7473.209940 C = 9012.737024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.121 4.121 5 C 0.096 3.904 6 N -0.602 5.602 7 C 0.566 3.434 8 O -0.569 6.569 9 C -0.168 4.168 10 C -0.042 4.042 11 C -0.159 4.159 12 C 0.124 3.876 13 N -0.531 5.531 14 C 0.317 3.683 15 N -0.518 5.518 16 C 0.036 3.964 17 C 0.045 3.955 18 C 0.126 3.874 19 C -0.092 4.092 20 H 0.052 0.948 21 C 0.159 3.841 22 N -0.762 5.762 23 C -0.227 4.227 24 H 0.066 0.934 25 C -0.054 4.054 26 N -0.979 5.979 27 Si 0.942 3.058 28 H -0.285 1.285 29 H -0.289 1.289 30 H -0.268 1.268 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.168 0.832 39 H 0.188 0.812 40 H 0.193 0.807 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.032 0.968 50 H 0.038 0.962 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 -3.211 -34.042 35.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.025 4.025 6 N -0.334 5.334 7 C 0.354 3.646 8 O -0.448 6.448 9 C -0.175 4.175 10 C -0.068 4.068 11 C -0.178 4.178 12 C -0.035 4.035 13 N -0.243 5.243 14 C 0.089 3.911 15 N -0.241 5.241 16 C -0.111 4.111 17 C -0.101 4.101 18 C 0.003 3.997 19 C -0.111 4.111 20 H 0.071 0.929 21 C 0.033 3.967 22 N -0.408 5.408 23 C -0.358 4.358 24 H 0.084 0.916 25 C -0.246 4.246 26 N -0.630 5.630 27 Si 0.771 3.229 28 H -0.212 1.212 29 H -0.215 1.215 30 H -0.193 1.193 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.185 0.815 39 H 0.205 0.795 40 H 0.210 0.790 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.056 0.944 51 H 0.193 0.807 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.719 -3.899 -33.045 34.158 hybrid contribution 0.747 -0.850 0.838 1.408 sum 8.466 -4.749 -32.207 33.638 Atomic orbital electron populations 1.21867 0.94427 1.01624 1.02453 1.21075 0.96328 0.99818 0.92361 0.89282 1.21954 0.94432 1.00875 0.98597 1.22292 0.95029 1.00636 0.84565 1.48114 1.42365 1.34630 1.08310 1.18316 0.78930 0.78685 0.88634 1.90790 1.56750 1.62745 1.34514 1.20568 1.07056 0.94128 0.95737 1.22090 0.92415 1.01436 0.90867 1.22519 1.00393 0.95957 0.98979 1.23474 0.91332 0.91966 0.96711 1.67860 1.12889 1.42000 1.01595 1.19729 0.92692 0.89826 0.88844 1.59777 1.09879 1.24930 1.29475 1.22342 0.91628 0.96712 1.00369 1.22237 0.93098 0.95230 0.99568 1.21459 0.93847 0.98766 0.85633 1.21616 0.94066 0.99708 0.95755 0.92915 1.20925 0.97634 0.94060 0.84052 1.42892 1.66023 1.29091 1.02745 1.19086 1.26525 1.06497 0.83688 0.91580 1.25290 1.02541 1.01847 0.94959 1.69838 1.53038 1.42397 0.97766 0.85605 0.79004 0.81119 0.77146 1.21215 1.21531 1.19317 0.93189 0.90234 0.93675 0.93016 0.87103 0.88145 0.88284 0.81468 0.79468 0.78985 0.93159 0.90284 0.91955 0.92892 0.90248 0.93435 0.90242 0.92985 0.94978 0.94379 0.80718 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.81 71.99 0.63 -2.29 16 2 C -0.08 -1.57 2.23 -10.76 -0.02 -1.59 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -1.84 5.36 30.67 0.16 -1.67 16 5 C 0.10 1.46 5.53 86.36 0.48 1.93 16 6 N -0.60 -15.74 2.97 -822.78 -2.45 -18.19 16 7 C 0.57 17.66 6.86 86.66 0.59 18.26 16 8 O -0.57 -23.86 16.11 -4.03 -0.06 -23.92 16 9 C -0.17 -3.97 4.93 -19.88 -0.10 -4.07 16 10 C -0.04 -0.56 7.54 22.71 0.17 -0.39 16 11 C -0.16 -1.27 10.09 22.33 0.23 -1.05 16 12 C 0.12 1.45 11.16 84.72 0.95 2.40 16 13 N -0.53 -10.82 9.57 -192.51 -1.84 -12.66 16 14 C 0.32 7.96 5.32 133.64 0.71 8.67 16 15 N -0.52 -14.55 4.07 -751.07 -3.06 -17.61 16 16 C 0.04 0.83 9.40 127.69 1.20 2.03 16 17 C 0.05 1.17 9.46 127.69 1.21 2.38 16 18 C 0.13 4.04 5.51 86.36 0.48 4.52 16 19 C -0.09 -2.81 1.92 -10.72 -0.02 -2.83 16 20 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 21 C 0.16 6.15 5.41 86.38 0.47 6.62 16 22 N -0.76 -38.26 5.18 -343.46 -1.78 -40.04 16 23 C -0.23 -13.56 10.47 84.03 0.88 -12.68 16 24 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 25 C -0.05 -3.40 5.50 84.86 0.47 -2.93 16 26 N -0.98 -65.09 13.97 21.65 0.30 -64.79 16 27 Si 0.94 50.58 27.74 68.60 1.90 52.48 16 28 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 29 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 30 H -0.27 -13.83 6.52 99.48 0.65 -13.18 16 31 H 0.05 1.17 6.30 -2.39 -0.02 1.15 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.21 4.70 -2.38 -0.01 1.19 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.17 1.38 7.36 -2.91 -0.02 1.36 16 39 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 40 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.05 1.54 8.11 -2.39 -0.02 1.52 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 47 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 48 H 0.05 2.16 6.23 -2.39 -0.01 2.15 16 49 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.04 1.47 6.14 -2.39 -0.01 1.46 16 51 H 0.36 18.39 4.76 -92.71 -0.44 17.95 16 52 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -85.43 405.48 1.91 -83.52 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.41 Total: 23.90 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 8.48 Total: 17.31 kcal Atomic # 7 Polarization: -144.47 SS G_CDS: -8.82 Total: -153.29 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 1.90 Total: 52.48 kcal Total: -85.43 1.91 -83.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133323489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.188 kcal (2) G-P(sol) polarization free energy of solvation -85.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds