Wall clock time and date at job start Wed Apr 1 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.45560 * 2 1 4 4 C 1.53032 * 109.44959 * 119.96946 * 2 1 3 5 5 C 1.53198 * 109.31352 * 58.65207 * 4 2 1 6 6 N 1.46924 * 108.77515 * 54.62891 * 5 4 2 7 7 C 1.34776 * 120.62520 * 126.41465 * 6 5 4 8 8 O 1.21613 * 119.99885 * 174.53001 * 7 6 5 9 9 C 1.47411 * 120.00300 * 354.53737 * 7 6 5 10 10 N 1.31875 * 125.93399 * 353.72340 * 9 7 6 11 11 C 1.33372 * 109.15065 * 179.86332 * 10 9 7 12 12 C 1.34867 * 108.16114 * 0.36225 * 11 10 9 13 13 N 1.35672 * 107.37260 * 359.82461 * 12 11 10 14 14 C 1.46446 * 124.57838 * 179.86910 * 13 12 11 15 15 C 1.53274 * 108.75737 * 342.83023 * 14 13 12 16 16 C 1.53145 * 109.61191 * 50.49120 * 15 14 13 17 17 C 1.50758 * 128.32241 * 179.89147 * 12 11 10 18 18 C 1.46919 * 118.74283 * 306.39246 * 6 5 4 19 19 C 1.53047 * 109.45691 * 240.03546 * 2 1 3 20 20 H 1.08990 * 109.49465 * 181.40896 * 19 2 1 21 21 C 1.52996 * 109.50124 * 61.33676 * 19 2 1 22 22 N 1.46500 * 109.47289 * 175.06392 * 21 19 2 23 23 C 1.36938 * 120.00137 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99892 * 0.02562 * 23 22 21 25 25 C 1.38805 * 119.99833 * 180.02562 * 23 22 21 26 26 N 1.31619 * 119.99667 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00186 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.46910 * 90.00695 * 27 25 23 29 29 H 1.48502 * 109.47171 * 210.00661 * 27 25 23 30 30 H 1.48496 * 109.46888 * 330.00276 * 27 25 23 31 31 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46779 * 299.96763 * 1 2 3 33 33 H 1.08997 * 109.47434 * 59.96418 * 1 2 3 34 34 H 1.09006 * 109.49569 * 178.59721 * 4 2 1 35 35 H 1.08997 * 109.50191 * 298.69564 * 4 2 1 36 36 H 1.09000 * 109.58300 * 174.42125 * 5 4 2 37 37 H 1.09005 * 109.58049 * 294.69957 * 5 4 2 38 38 H 1.08002 * 125.91475 * 180.13859 * 11 10 9 39 39 H 1.08994 * 109.59387 * 102.60877 * 14 13 12 40 40 H 1.09006 * 109.58838 * 223.04742 * 14 13 12 41 41 H 1.09000 * 109.45016 * 290.45125 * 15 14 13 42 42 H 1.08999 * 109.44938 * 170.53781 * 15 14 13 43 43 H 1.09002 * 109.51116 * 170.59171 * 16 15 14 44 44 H 1.09008 * 109.54865 * 50.48391 * 16 15 14 45 45 H 1.08994 * 109.73428 * 283.82559 * 17 12 11 46 46 H 1.09003 * 109.73441 * 44.47280 * 17 12 11 47 47 H 1.09003 * 109.58618 * 293.82553 * 18 6 5 48 48 H 1.08994 * 109.58818 * 173.39863 * 18 6 5 49 49 H 1.09005 * 109.47368 * 295.06840 * 21 19 2 50 50 H 1.09005 * 109.46942 * 55.06183 * 21 19 2 51 51 H 0.96998 * 119.99241 * 0.02562 * 22 21 19 52 52 H 0.97005 * 119.99729 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4991 -2.1542 1.2641 6 7 1.8620 -2.8089 -0.0002 7 6 2.5150 -3.9879 -0.0001 8 8 2.7220 -4.5684 -1.0485 9 6 2.9780 -4.5740 1.2707 10 7 2.9216 -3.9969 2.4552 11 6 3.4281 -4.8249 3.3699 12 6 3.8221 -5.9526 2.7439 13 7 3.5435 -5.8021 1.4246 14 6 3.8219 -6.8070 0.3964 15 6 4.8309 -7.8168 0.9546 16 6 4.3527 -8.3203 2.3196 17 6 4.4565 -7.1817 3.3434 18 6 1.4993 -2.1541 -1.2644 19 6 2.0399 -0.7208 -1.2502 20 1 3.1295 -0.7431 -1.2383 21 6 1.5577 0.0199 -2.4991 22 7 2.1420 -0.6003 -3.6908 23 6 1.8519 -0.1034 -4.9334 24 1 1.1927 0.7460 -5.0349 25 6 2.4050 -0.6914 -6.0625 26 7 2.1266 -0.2135 -7.2568 27 14 3.5458 -2.1602 -5.8869 28 1 2.7497 -3.4130 -5.9289 29 1 4.5279 -2.1602 -7.0008 30 1 4.2668 -2.0749 -4.5915 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3634 0.5144 -0.8896 34 1 3.1294 -0.7431 1.2383 35 1 1.6956 -0.1935 2.1398 36 1 1.9376 -2.7019 2.0983 37 1 0.4144 -2.1346 1.3697 38 1 3.5117 -4.6252 4.4280 39 1 2.8991 -7.3221 0.1294 40 1 4.2403 -6.3215 -0.4853 41 1 5.8026 -7.3355 1.0654 42 1 4.9195 -8.6587 0.2679 43 1 4.9768 -9.1550 2.6387 44 1 3.3161 -8.6489 2.2445 45 1 5.5045 -6.9829 3.5675 46 1 3.9309 -7.4587 4.2573 47 1 0.4143 -2.1345 -1.3675 48 1 1.9378 -2.7018 -2.0985 49 1 0.4706 -0.0347 -2.5569 50 1 1.8666 1.0639 -2.4443 51 1 2.7343 -1.3630 -3.5995 52 1 2.5135 -0.6242 -8.0459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133326296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:41 Heat of formation + Delta-G solvation = 43.115916 kcal Electronic energy + Delta-G solvation = -31846.235216 eV Core-core repulsion = 27846.976745 eV Total energy + Delta-G solvation = -3999.258472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.87099 -40.15271 -38.04809 -37.17621 -35.05603 -33.64146 -33.22813 -31.88421 -31.11952 -30.12792 -28.70235 -27.57087 -25.97366 -24.88986 -24.69315 -22.91654 -22.79843 -22.22598 -21.01717 -20.34883 -19.30254 -18.43011 -17.48270 -17.14453 -16.61623 -16.46438 -15.64322 -15.18991 -15.06631 -14.87566 -14.71490 -14.55613 -14.38570 -14.22876 -14.10148 -13.82172 -13.79545 -13.41582 -13.19020 -12.90928 -12.63211 -12.45625 -12.42635 -12.05581 -11.64896 -11.61183 -11.54713 -11.48351 -11.46234 -11.10518 -10.99638 -10.77556 -10.69727 -10.34770 -10.22168 -10.08924 -10.02650 -9.98797 -9.52540 -9.33356 -8.82792 -8.75402 -8.39691 -7.15870 -5.70919 -3.05810 1.17557 2.16395 2.34249 3.10833 3.27780 3.45845 3.50818 3.53188 3.98438 4.09061 4.12545 4.22396 4.33702 4.66616 4.74540 4.80934 4.88584 4.90390 4.97521 4.99507 5.00592 5.20368 5.24361 5.25814 5.30030 5.39564 5.43139 5.43352 5.52150 5.60354 5.63458 5.64436 5.68599 5.77911 5.83043 5.88481 5.97508 6.02525 6.13773 6.14555 6.28903 6.34679 6.39546 6.41044 6.51107 6.60045 6.73333 6.83523 6.91807 7.33083 7.57663 8.05482 8.09107 8.48364 9.27668 10.00637 10.20323 11.47548 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003337 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.298477 B = 8388.254340 C =10488.216436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.055 3.945 6 N -0.580 5.580 7 C 0.599 3.401 8 O -0.541 6.541 9 C 0.158 3.842 10 N -0.443 5.443 11 C -0.025 4.025 12 C -0.002 4.002 13 N -0.407 5.407 14 C 0.099 3.901 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.048 4.048 18 C 0.119 3.881 19 C -0.105 4.105 20 H 0.072 0.928 21 C 0.165 3.835 22 N -0.757 5.757 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.936 5.936 27 Si 0.881 3.119 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -14.517 27.987 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.067 4.067 6 N -0.311 5.311 7 C 0.384 3.616 8 O -0.417 6.417 9 C -0.101 4.101 10 N -0.164 5.164 11 C -0.177 4.177 12 C -0.122 4.122 13 N -0.087 5.087 14 C -0.022 4.022 15 C -0.174 4.174 16 C -0.165 4.165 17 C -0.086 4.086 18 C -0.002 4.002 19 C -0.125 4.125 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.403 5.403 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.584 5.584 27 Si 0.711 3.289 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.080 0.920 38 H 0.195 0.805 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.678 -13.992 27.163 30.673 hybrid contribution 1.128 -1.620 -0.241 1.988 sum 3.806 -15.612 26.923 31.354 Atomic orbital electron populations 1.21985 0.95195 1.01959 1.01818 1.21103 0.96078 0.99371 0.94002 0.90834 1.21848 1.00930 0.95348 0.97799 1.23123 1.00544 0.94900 0.88173 1.47791 1.54785 1.19621 1.08924 1.16578 0.78502 0.81481 0.85051 1.90839 1.58022 1.61211 1.31669 1.22558 1.06993 0.85386 0.95209 1.69798 1.19466 1.29126 0.98036 1.22110 1.04924 0.90837 0.99787 1.21317 1.07021 1.00214 0.83638 1.44971 1.42240 1.13600 1.07907 1.22242 1.00960 0.88745 0.90293 1.21954 0.98773 0.98861 0.97798 1.21693 1.02512 0.98006 0.94309 1.20309 1.00763 0.89313 0.98189 1.21831 1.00484 0.92941 0.84966 1.21739 1.00806 0.94215 0.95720 0.90937 1.20677 0.96409 0.94973 0.84223 1.42791 1.57425 1.37466 1.02633 1.19051 1.24083 1.12163 0.81845 0.89184 1.24644 1.00233 0.99062 0.95127 1.69707 1.48498 1.43173 0.96998 0.86590 0.81391 0.83987 0.76884 1.20908 1.21775 1.20353 0.92499 0.93038 0.91815 0.91844 0.90962 0.82816 0.91997 0.80512 0.89102 0.87324 0.90591 0.89041 0.90205 0.91187 0.89556 0.89005 0.90599 0.88761 0.94972 0.95192 0.80613 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.11 37.16 0.30 -1.52 16 2 C -0.09 -1.12 2.71 -90.58 -0.25 -1.37 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.42 5.62 -26.61 -0.15 -1.56 16 5 C 0.05 0.68 5.85 -3.71 -0.02 0.66 16 6 N -0.58 -8.84 2.97 -174.04 -0.52 -9.36 16 7 C 0.60 9.80 7.68 -12.53 -0.10 9.71 16 8 O -0.54 -10.27 14.65 5.27 0.08 -10.19 16 9 C 0.16 2.20 7.58 -154.85 -1.17 1.02 16 10 N -0.44 -5.52 7.59 -11.44 -0.09 -5.61 16 11 C -0.03 -0.24 11.82 -18.08 -0.21 -0.46 16 12 C 0.00 -0.02 6.57 -82.06 -0.54 -0.56 16 13 N -0.41 -4.67 3.14 -110.08 -0.35 -5.02 16 14 C 0.10 0.96 6.17 -3.93 -0.02 0.94 16 15 C -0.14 -0.85 5.93 -26.51 -0.16 -1.00 16 16 C -0.13 -0.63 5.96 -26.41 -0.16 -0.78 16 17 C -0.05 -0.25 6.31 -27.61 -0.17 -0.43 16 18 C 0.12 2.01 5.04 -3.71 -0.02 1.99 16 19 C -0.11 -1.73 2.15 -90.49 -0.19 -1.92 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 22 N -0.76 -18.81 5.18 -59.91 -0.31 -19.12 16 23 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 24 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 25 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 26 N -0.94 -30.25 13.97 55.49 0.78 -29.48 16 27 Si 0.88 23.46 27.74 -169.99 -4.71 18.74 16 28 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 30 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 31 H 0.06 0.69 4.98 -51.93 -0.26 0.43 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.16 1.92 3.69 -78.94 -0.29 1.63 16 37 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 38 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.26 7.17 -51.93 -0.37 0.88 16 41 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.38 8.12 -51.92 -0.42 -0.05 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 1.23 6.69 -51.93 -0.35 0.88 16 48 H 0.09 1.88 6.25 -51.93 -0.32 1.56 16 49 H 0.03 0.63 6.73 -51.93 -0.35 0.28 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.36 9.01 4.76 -40.82 -0.19 8.82 16 52 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -35.34 388.39 -10.74 -46.08 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.33 Total: 7.31 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.14 Total: 0.77 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.48 Total: -68.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.71 Total: 18.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.34 -10.74 -46.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133326296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.198 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds