Wall clock time and date at job start Wed Apr 1 2020 03:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.45560 * 2 1 4 4 C 1.53032 * 109.44959 * 119.96946 * 2 1 3 5 5 C 1.53198 * 109.31352 * 58.65207 * 4 2 1 6 6 N 1.46924 * 108.77515 * 54.62891 * 5 4 2 7 7 C 1.34776 * 120.62520 * 126.41465 * 6 5 4 8 8 O 1.21613 * 119.99885 * 174.53001 * 7 6 5 9 9 C 1.47411 * 120.00300 * 354.53737 * 7 6 5 10 10 N 1.31875 * 125.93399 * 353.72340 * 9 7 6 11 11 C 1.33372 * 109.15065 * 179.86332 * 10 9 7 12 12 C 1.34867 * 108.16114 * 0.36225 * 11 10 9 13 13 N 1.35672 * 107.37260 * 359.82461 * 12 11 10 14 14 C 1.46446 * 124.57838 * 179.86910 * 13 12 11 15 15 C 1.53274 * 108.75737 * 342.83023 * 14 13 12 16 16 C 1.53145 * 109.61191 * 50.49120 * 15 14 13 17 17 C 1.50758 * 128.32241 * 179.89147 * 12 11 10 18 18 C 1.46919 * 118.74283 * 306.39246 * 6 5 4 19 19 C 1.53047 * 109.45691 * 240.03546 * 2 1 3 20 20 H 1.08990 * 109.49465 * 181.40896 * 19 2 1 21 21 C 1.52996 * 109.50124 * 61.33676 * 19 2 1 22 22 N 1.46500 * 109.47289 * 175.06392 * 21 19 2 23 23 C 1.36938 * 120.00137 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99892 * 0.02562 * 23 22 21 25 25 C 1.38805 * 119.99833 * 180.02562 * 23 22 21 26 26 N 1.31619 * 119.99667 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00186 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.46910 * 90.00695 * 27 25 23 29 29 H 1.48502 * 109.47171 * 210.00661 * 27 25 23 30 30 H 1.48496 * 109.46888 * 330.00276 * 27 25 23 31 31 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46779 * 299.96763 * 1 2 3 33 33 H 1.08997 * 109.47434 * 59.96418 * 1 2 3 34 34 H 1.09006 * 109.49569 * 178.59721 * 4 2 1 35 35 H 1.08997 * 109.50191 * 298.69564 * 4 2 1 36 36 H 1.09000 * 109.58300 * 174.42125 * 5 4 2 37 37 H 1.09005 * 109.58049 * 294.69957 * 5 4 2 38 38 H 1.08002 * 125.91475 * 180.13859 * 11 10 9 39 39 H 1.08994 * 109.59387 * 102.60877 * 14 13 12 40 40 H 1.09006 * 109.58838 * 223.04742 * 14 13 12 41 41 H 1.09000 * 109.45016 * 290.45125 * 15 14 13 42 42 H 1.08999 * 109.44938 * 170.53781 * 15 14 13 43 43 H 1.09002 * 109.51116 * 170.59171 * 16 15 14 44 44 H 1.09008 * 109.54865 * 50.48391 * 16 15 14 45 45 H 1.08994 * 109.73428 * 283.82559 * 17 12 11 46 46 H 1.09003 * 109.73441 * 44.47280 * 17 12 11 47 47 H 1.09003 * 109.58618 * 293.82553 * 18 6 5 48 48 H 1.08994 * 109.58818 * 173.39863 * 18 6 5 49 49 H 1.09005 * 109.47368 * 295.06840 * 21 19 2 50 50 H 1.09005 * 109.46942 * 55.06183 * 21 19 2 51 51 H 0.96998 * 119.99241 * 0.02562 * 22 21 19 52 52 H 0.97005 * 119.99729 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4991 -2.1542 1.2641 6 7 1.8620 -2.8089 -0.0002 7 6 2.5150 -3.9879 -0.0001 8 8 2.7220 -4.5684 -1.0485 9 6 2.9780 -4.5740 1.2707 10 7 2.9216 -3.9969 2.4552 11 6 3.4281 -4.8249 3.3699 12 6 3.8221 -5.9526 2.7439 13 7 3.5435 -5.8021 1.4246 14 6 3.8219 -6.8070 0.3964 15 6 4.8309 -7.8168 0.9546 16 6 4.3527 -8.3203 2.3196 17 6 4.4565 -7.1817 3.3434 18 6 1.4993 -2.1541 -1.2644 19 6 2.0399 -0.7208 -1.2502 20 1 3.1295 -0.7431 -1.2383 21 6 1.5577 0.0199 -2.4991 22 7 2.1420 -0.6003 -3.6908 23 6 1.8519 -0.1034 -4.9334 24 1 1.1927 0.7460 -5.0349 25 6 2.4050 -0.6914 -6.0625 26 7 2.1266 -0.2135 -7.2568 27 14 3.5458 -2.1602 -5.8869 28 1 2.7497 -3.4130 -5.9289 29 1 4.5279 -2.1602 -7.0008 30 1 4.2668 -2.0749 -4.5915 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3634 0.5144 -0.8896 34 1 3.1294 -0.7431 1.2383 35 1 1.6956 -0.1935 2.1398 36 1 1.9376 -2.7019 2.0983 37 1 0.4144 -2.1346 1.3697 38 1 3.5117 -4.6252 4.4280 39 1 2.8991 -7.3221 0.1294 40 1 4.2403 -6.3215 -0.4853 41 1 5.8026 -7.3355 1.0654 42 1 4.9195 -8.6587 0.2679 43 1 4.9768 -9.1550 2.6387 44 1 3.3161 -8.6489 2.2445 45 1 5.5045 -6.9829 3.5675 46 1 3.9309 -7.4587 4.2573 47 1 0.4143 -2.1345 -1.3675 48 1 1.9378 -2.7018 -2.0985 49 1 0.4706 -0.0347 -2.5569 50 1 1.8666 1.0639 -2.4443 51 1 2.7343 -1.3630 -3.5995 52 1 2.5135 -0.6242 -8.0459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133326296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:40 Heat of formation + Delta-G solvation = 21.322940 kcal Electronic energy + Delta-G solvation = -31847.180231 eV Core-core repulsion = 27846.976745 eV Total energy + Delta-G solvation = -4000.203486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.69523 -41.34470 -39.31534 -37.82649 -36.78751 -34.98607 -33.96748 -33.68501 -32.20840 -31.50246 -29.56202 -28.71747 -27.38136 -26.06483 -25.38820 -24.58878 -23.79988 -22.94629 -22.55796 -21.40155 -20.11329 -19.84812 -19.18442 -18.23963 -17.75534 -17.29544 -16.84324 -16.70488 -16.19247 -16.08849 -15.97223 -15.48554 -15.20258 -15.13614 -15.01536 -14.91659 -14.80394 -14.66689 -14.61419 -14.22333 -14.15316 -13.87425 -13.42839 -13.18094 -13.02556 -12.98790 -12.68834 -12.52900 -12.22584 -12.13794 -12.11854 -11.95538 -11.93584 -11.89705 -11.79733 -11.52419 -11.38299 -11.31457 -11.02401 -10.83901 -10.31693 -9.79327 -9.35609 -9.32567 -8.08590 -5.40368 0.20841 1.26903 1.29890 1.32971 1.38210 1.50766 2.07612 2.22251 2.40616 3.07149 3.23344 3.44576 3.47900 3.52712 3.69992 3.78375 3.80508 3.84515 3.91910 4.07809 4.13768 4.19446 4.27289 4.31299 4.42184 4.48267 4.49679 4.56970 4.60156 4.71929 4.76111 4.78582 4.83505 4.85312 4.90606 4.94878 5.02568 5.07588 5.07777 5.15519 5.19785 5.24443 5.27137 5.33022 5.39857 5.45275 5.56733 5.71553 5.78361 5.95995 6.16551 6.20126 6.64381 6.95414 7.01804 7.79018 7.96278 9.13154 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003337 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.298477 B = 8388.254340 C =10488.216436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.082 0.918 4 C -0.113 4.113 5 C 0.053 3.947 6 N -0.580 5.580 7 C 0.590 3.410 8 O -0.583 6.583 9 C 0.113 3.887 10 N -0.444 5.444 11 C -0.035 4.035 12 C 0.012 3.988 13 N -0.410 5.410 14 C 0.094 3.906 15 C -0.129 4.129 16 C -0.124 4.124 17 C -0.047 4.047 18 C 0.125 3.875 19 C -0.093 4.093 20 H 0.057 0.943 21 C 0.163 3.837 22 N -0.762 5.762 23 C -0.229 4.229 24 H 0.065 0.935 25 C -0.056 4.056 26 N -0.979 5.979 27 Si 0.944 3.056 28 H -0.283 1.283 29 H -0.288 1.288 30 H -0.267 1.267 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.212 0.788 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.038 0.962 50 H 0.032 0.968 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -16.030 32.396 36.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.067 4.067 6 N -0.310 5.310 7 C 0.377 3.623 8 O -0.463 6.463 9 C -0.144 4.144 10 N -0.166 5.166 11 C -0.187 4.187 12 C -0.108 4.108 13 N -0.090 5.090 14 C -0.027 4.027 15 C -0.167 4.167 16 C -0.162 4.162 17 C -0.085 4.085 18 C 0.002 3.998 19 C -0.113 4.113 20 H 0.075 0.925 21 C 0.037 3.963 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.083 0.917 25 C -0.248 4.248 26 N -0.630 5.630 27 Si 0.773 3.227 28 H -0.209 1.209 29 H -0.214 1.214 30 H -0.193 1.193 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.177 0.823 37 H 0.092 0.908 38 H 0.229 0.771 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.136 0.864 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.472 -15.478 31.628 35.383 hybrid contribution 0.837 -1.138 -1.493 2.056 sum 4.309 -16.616 30.134 34.681 Atomic orbital electron populations 1.21953 0.94083 1.01968 1.02587 1.21100 0.96912 0.99404 0.92577 0.89925 1.21816 1.00264 0.94801 0.98179 1.23326 1.01337 0.95202 0.86883 1.47852 1.54514 1.19511 1.09131 1.17003 0.78076 0.81481 0.85724 1.90796 1.59720 1.62380 1.33389 1.22033 1.10531 0.87151 0.94643 1.69668 1.19295 1.29760 0.97921 1.22780 1.04435 0.90525 1.00922 1.22133 1.04873 1.01329 0.82478 1.45164 1.41658 1.13066 1.09158 1.22319 1.01743 0.88966 0.89704 1.21976 0.97386 0.98172 0.99165 1.21716 1.02799 0.98611 0.93051 1.20565 1.01689 0.87361 0.98838 1.21587 1.00354 0.92799 0.85037 1.21601 0.99750 0.94008 0.95902 0.92496 1.20859 0.96441 0.95124 0.83893 1.42876 1.57596 1.37551 1.02722 1.19081 1.22440 1.10811 0.83661 0.91676 1.25332 1.02456 1.02106 0.94899 1.69849 1.50356 1.45037 0.97794 0.85572 0.79508 0.80452 0.77190 1.20943 1.21392 1.19279 0.92850 0.90328 0.93012 0.92862 0.87766 0.82333 0.90816 0.77132 0.89462 0.90167 0.90659 0.87490 0.87541 0.91596 0.87793 0.86403 0.90150 0.92430 0.94407 0.94967 0.80696 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.11 71.98 0.58 -2.66 16 2 C -0.08 -1.96 2.71 -10.77 -0.03 -1.99 16 3 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.11 -2.37 5.62 30.67 0.17 -2.20 16 5 C 0.05 1.25 5.85 86.36 0.51 1.76 16 6 N -0.58 -17.97 2.97 -822.79 -2.45 -20.41 16 7 C 0.59 20.18 7.68 86.66 0.67 20.84 16 8 O -0.58 -23.71 14.65 -4.07 -0.06 -23.77 16 9 C 0.11 3.16 7.58 136.40 1.03 4.19 16 10 N -0.44 -10.46 7.59 -190.12 -1.44 -11.90 16 11 C -0.03 -0.58 11.82 83.68 0.99 0.41 16 12 C 0.01 0.19 6.57 41.21 0.27 0.47 16 13 N -0.41 -9.22 3.14 -502.18 -1.58 -10.79 16 14 C 0.09 1.86 6.17 86.48 0.53 2.39 16 15 C -0.13 -1.38 5.93 30.73 0.18 -1.20 16 16 C -0.12 -0.79 5.96 30.80 0.18 -0.60 16 17 C -0.05 -0.30 6.31 30.03 0.19 -0.11 16 18 C 0.12 4.33 5.04 86.37 0.44 4.76 16 19 C -0.09 -3.06 2.15 -10.71 -0.02 -3.08 16 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 21 C 0.16 6.52 5.19 86.38 0.45 6.97 16 22 N -0.76 -38.64 5.18 -343.45 -1.78 -40.42 16 23 C -0.23 -13.76 10.47 84.03 0.88 -12.88 16 24 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 25 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 26 N -0.98 -65.09 13.97 21.65 0.30 -64.79 16 27 Si 0.94 49.93 27.74 68.60 1.90 51.83 16 28 H -0.28 -14.88 7.11 99.48 0.71 -14.18 16 29 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 30 H -0.27 -13.51 6.52 99.48 0.65 -12.87 16 31 H 0.05 1.20 4.98 -2.39 -0.01 1.19 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.25 6.58 -2.39 -0.02 1.24 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.16 3.72 3.69 -55.72 -0.21 3.51 16 37 H 0.07 1.57 6.70 -2.38 -0.02 1.55 16 38 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.03 7.17 -2.38 -0.02 2.01 16 41 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 42 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 44 H 0.07 0.51 8.12 -2.38 -0.02 0.49 16 45 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.08 2.66 6.69 -2.39 -0.02 2.65 16 48 H 0.06 2.43 6.25 -2.39 -0.01 2.41 16 49 H 0.04 1.50 6.73 -2.38 -0.02 1.48 16 50 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.36 18.36 4.76 -92.71 -0.44 17.92 16 52 H 0.26 16.36 8.31 -92.70 -0.77 15.59 16 Total: -1.00 -80.68 388.39 2.63 -78.06 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.24 Total: 28.16 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.49 Total: 14.03 kcal Atomic # 7 Polarization: -141.37 SS G_CDS: -6.94 Total: -148.32 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.90 Total: 51.83 kcal Total: -80.68 2.63 -78.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133326296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.378 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds