Wall clock time and date at job start Wed Apr 1 2020 04:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.30671 * 2 1 4 4 C 1.54389 * 110.34120 * 237.82374 * 2 1 3 5 5 N 1.48142 * 104.62041 * 264.89294 * 4 2 1 6 6 C 1.34768 * 127.84055 * 140.39449 * 5 4 2 7 7 O 1.21281 * 120.00597 * 180.02562 * 6 5 4 8 8 C 1.50706 * 120.00038 * 0.02562 * 6 5 4 9 9 H 1.08999 * 109.46445 * 299.99800 * 8 6 5 10 10 C 1.53147 * 109.46696 * 180.02562 * 8 6 5 11 11 C 1.53395 * 109.24600 * 170.50803 * 10 8 6 12 12 C 1.51040 * 108.21066 * 48.80449 * 11 10 8 13 13 N 1.30091 * 127.38951 * 164.02736 * 12 11 10 14 14 C 1.34289 * 109.21466 * 180.10159 * 13 12 11 15 15 C 1.34852 * 108.06926 * 359.97438 * 14 13 12 16 16 N 1.35417 * 123.98719 * 344.08196 * 12 11 10 17 17 C 1.46481 * 124.81690 * 359.84355 * 16 12 11 18 18 C 1.48148 * 104.32251 * 320.41203 * 5 4 2 19 19 C 1.54280 * 110.43132 * 122.23632 * 2 1 3 20 20 C 1.53003 * 110.34580 * 0.04358 * 19 2 1 21 21 C 1.53005 * 110.34445 * 237.78435 * 19 2 1 22 22 N 1.46497 * 109.47131 * 180.02562 * 21 19 2 23 23 C 1.36937 * 119.99740 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99996 * 359.97438 * 23 22 21 25 25 C 1.38817 * 120.00103 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99738 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00079 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47332 * 59.99809 * 27 25 23 29 29 H 1.48505 * 109.47142 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47400 * 299.99449 * 27 25 23 31 31 H 1.09001 * 109.47275 * 179.29977 * 1 2 3 32 32 H 1.09000 * 109.46451 * 299.29666 * 1 2 3 33 33 H 1.08995 * 109.47048 * 59.29464 * 1 2 3 34 34 H 1.09000 * 110.40509 * 23.67790 * 4 2 1 35 35 H 1.09001 * 110.40707 * 145.98494 * 4 2 1 36 36 H 1.08997 * 109.51128 * 290.43476 * 10 8 6 37 37 H 1.08999 * 109.51562 * 50.58047 * 10 8 6 38 38 H 1.09004 * 109.69964 * 289.13674 * 11 10 8 39 39 H 1.08994 * 109.76781 * 168.51549 * 11 10 8 40 40 H 1.07999 * 125.96578 * 179.97438 * 14 13 12 41 41 H 1.08004 * 126.65537 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.57859 * 223.09016 * 17 16 12 43 43 H 1.08995 * 109.58291 * 102.68331 * 17 16 12 44 44 H 1.08998 * 110.40441 * 158.36670 * 18 5 4 45 45 H 1.08994 * 110.41147 * 280.80433 * 18 5 4 46 46 H 1.08998 * 109.46584 * 60.00187 * 20 19 2 47 47 H 1.08995 * 109.47120 * 179.97438 * 20 19 2 48 48 H 1.08997 * 109.46741 * 300.00351 * 20 19 2 49 49 H 1.08996 * 109.46910 * 299.99985 * 21 19 2 50 50 H 1.08995 * 109.46861 * 60.00284 * 21 19 2 51 51 H 0.97004 * 120.00317 * 359.97438 * 22 21 19 52 52 H 0.97001 * 120.00293 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 2.3164 -2.1425 -0.7242 6 6 2.0806 -3.3092 -1.3561 7 8 2.3408 -4.3593 -0.8079 8 6 1.4934 -3.3092 -2.7440 9 1 0.5206 -2.8177 -2.7269 10 6 1.3270 -4.7527 -3.2278 11 6 0.5167 -4.7592 -4.5303 12 6 1.1155 -3.7339 -5.4639 13 7 0.9199 -3.6226 -6.7451 14 6 1.6336 -2.5856 -7.2127 15 6 2.2971 -2.0334 -6.1767 16 7 1.9692 -2.7591 -5.0704 17 6 2.4299 -2.5559 -3.6949 18 6 2.8836 -1.9405 0.6294 19 6 2.0686 -0.7712 1.2229 20 6 0.9100 -1.3051 2.0676 21 6 2.9710 0.1320 2.0661 22 7 3.4717 -0.6186 3.2203 23 6 4.3038 -0.0119 4.1229 24 1 4.5913 1.0198 3.9836 25 6 4.7787 -0.7232 5.2163 26 7 4.4287 -1.9806 5.3857 27 14 5.9144 0.1043 6.4471 28 1 5.2234 1.2717 7.0512 29 1 6.2765 -0.8628 7.5144 30 1 7.1458 0.5618 5.7546 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3632 0.5029 0.8963 33 1 -0.3633 0.5247 -0.8836 34 1 1.3216 -0.7866 -2.0206 35 1 2.9928 -0.3202 -1.5821 36 1 2.3083 -5.1918 -3.4075 37 1 0.8013 -5.3326 -2.4693 38 1 -0.5212 -4.5020 -4.3187 39 1 0.5646 -5.7467 -4.9893 40 1 1.6700 -2.2521 -8.2393 41 1 2.9600 -1.1816 -6.2159 42 1 2.4134 -1.4923 -3.4574 43 1 3.4444 -2.9401 -3.5889 44 1 2.7547 -2.8387 1.2333 45 1 3.9384 -1.6738 0.5636 46 1 0.3000 -1.9772 1.4640 47 1 1.3060 -1.8472 2.9263 48 1 0.2987 -0.4718 2.4138 49 1 3.8119 0.4717 1.4616 50 1 2.4007 0.9939 2.4124 51 1 3.2132 -1.5451 3.3456 52 1 4.7602 -2.4776 6.1499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181947106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:12 Heat of formation + Delta-G solvation = 39.774963 kcal Electronic energy + Delta-G solvation = -31598.462201 eV Core-core repulsion = 27599.058855 eV Total energy + Delta-G solvation = -3999.403346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.63127 -40.64002 -38.77521 -36.39846 -34.96328 -33.61938 -33.18752 -31.61820 -30.64503 -29.62766 -28.79572 -27.51157 -25.81927 -25.66339 -24.84818 -23.43706 -22.66255 -21.65433 -21.28781 -19.77875 -19.19749 -18.56350 -17.56329 -17.38307 -16.94474 -16.07787 -16.00951 -15.53475 -15.08917 -14.62370 -14.52323 -14.40562 -14.25010 -14.19042 -14.08493 -13.69547 -13.66771 -13.28056 -13.09142 -13.04051 -12.66701 -12.45095 -12.25821 -12.13768 -11.93732 -11.64852 -11.60617 -11.40073 -11.35310 -11.33358 -11.04776 -10.83533 -10.52694 -10.42955 -10.28057 -10.23228 -10.00860 -9.92889 -9.87174 -9.66248 -8.92071 -8.76842 -8.61433 -6.96785 -5.79783 -3.09052 1.76730 2.23899 2.51583 2.77846 2.89599 3.41210 3.45806 3.47069 3.88037 4.01832 4.06009 4.14220 4.41720 4.48373 4.56997 4.60659 4.67609 4.77111 4.79027 4.86766 4.93873 5.14837 5.17605 5.18432 5.24401 5.31498 5.35422 5.39723 5.48876 5.55193 5.55703 5.61974 5.67109 5.78210 5.80487 5.89171 5.93772 6.00887 6.01408 6.06922 6.12566 6.16550 6.35943 6.48449 6.49556 6.60377 6.69911 6.79035 6.85028 7.43666 7.65590 7.84684 7.97650 8.38656 9.50004 10.06650 10.40892 11.42722 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.002338 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.294952 B =11973.827276 C =12204.037266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.099 3.901 5 N -0.618 5.618 6 C 0.540 3.460 7 O -0.527 6.527 8 C -0.117 4.117 9 H 0.108 0.892 10 C -0.107 4.107 11 C -0.034 4.034 12 C 0.208 3.792 13 N -0.490 5.490 14 C -0.032 4.032 15 C -0.054 4.054 16 N -0.454 5.454 17 C 0.110 3.890 18 C 0.119 3.881 19 C -0.074 4.074 20 C -0.132 4.132 21 C 0.168 3.832 22 N -0.730 5.730 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.020 0.980 50 H 0.023 0.977 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 1.388 -22.107 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.024 4.024 5 N -0.351 5.351 6 C 0.326 3.674 7 O -0.402 6.402 8 C -0.138 4.138 9 H 0.126 0.874 10 C -0.145 4.145 11 C -0.073 4.073 12 C -0.055 4.055 13 N -0.209 5.209 14 C -0.180 4.180 15 C -0.187 4.187 16 N -0.138 5.138 17 C -0.012 4.012 18 C -0.002 4.002 19 C -0.075 4.075 20 C -0.189 4.189 21 C 0.040 3.960 22 N -0.375 5.375 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.187 0.813 41 H 0.192 0.808 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.040 0.960 51 H 0.220 0.780 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.113 0.353 -22.100 23.908 hybrid contribution 1.272 1.037 1.187 2.025 sum -7.842 1.389 -20.913 22.378 Atomic orbital electron populations 1.21916 0.94440 1.01940 1.01683 1.22141 0.96324 0.99586 0.93638 0.89244 1.22635 1.00454 0.82157 0.97198 1.49055 1.62547 1.05052 1.18492 1.19650 0.78577 0.82551 0.86590 1.90768 1.51889 1.30259 1.67331 1.21596 1.00574 0.99405 0.92258 0.87417 1.21550 1.02274 0.93959 0.96709 1.20250 0.99113 0.96376 0.91530 1.23399 0.96140 0.94135 0.91816 1.70073 1.24030 1.19604 1.07182 1.22369 0.99981 0.96252 0.99365 1.22588 1.07546 1.02224 0.86327 1.45343 1.35767 1.24685 1.07968 1.22019 0.98843 1.02240 0.78133 1.22536 0.97259 0.99197 0.81237 1.21707 0.96271 0.95077 0.94471 1.21863 0.96811 1.00657 0.99605 1.20703 0.93581 0.92973 0.88726 1.42391 1.57281 1.12866 1.25002 1.19145 1.20593 0.95687 1.01926 0.91300 1.24738 1.01040 0.96067 0.98957 1.69641 1.48836 1.08387 1.31121 0.86281 0.80717 0.78178 0.81053 1.21299 1.21699 1.21303 0.92407 0.91690 0.93188 0.90629 0.90696 0.90362 0.88568 0.89057 0.88160 0.81296 0.80772 0.88247 0.89083 0.89463 0.90245 0.93434 0.91353 0.92396 0.96246 0.95950 0.78034 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.93 37.16 0.29 -1.01 16 2 C -0.10 -1.00 3.30 -89.22 -0.29 -1.29 16 3 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 4 C 0.10 0.86 4.93 -2.41 -0.01 0.85 16 5 N -0.62 -7.29 3.31 -169.31 -0.56 -7.85 16 6 C 0.54 6.64 7.25 -10.99 -0.08 6.56 16 7 O -0.53 -8.72 16.09 5.56 0.09 -8.63 16 8 C -0.12 -1.01 1.87 -91.56 -0.17 -1.18 16 9 H 0.11 0.81 7.93 -51.93 -0.41 0.40 16 10 C -0.11 -0.92 4.68 -26.45 -0.12 -1.04 16 11 C -0.03 -0.27 6.33 -27.51 -0.17 -0.44 16 12 C 0.21 2.18 7.65 -155.25 -1.19 0.99 16 13 N -0.49 -5.97 11.24 -10.62 -0.12 -6.09 16 14 C -0.03 -0.32 11.87 -17.68 -0.21 -0.53 16 15 C -0.05 -0.46 11.64 -16.76 -0.20 -0.66 16 16 N -0.45 -4.16 3.13 -113.76 -0.36 -4.52 16 17 C 0.11 0.85 5.91 -3.92 -0.02 0.83 16 18 C 0.12 1.80 5.71 -2.40 -0.01 1.78 16 19 C -0.07 -1.05 0.73 -153.10 -0.11 -1.16 16 20 C -0.13 -1.97 7.09 37.16 0.26 -1.70 16 21 C 0.17 3.05 4.87 -4.04 -0.02 3.03 16 22 N -0.73 -17.35 5.12 -59.91 -0.31 -17.66 16 23 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 27 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 32 H 0.06 0.63 6.90 -51.93 -0.36 0.28 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.50 6.15 -51.93 -0.32 0.18 16 35 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.10 0.86 7.79 -51.93 -0.40 0.46 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 42 H 0.10 0.60 5.67 -51.93 -0.29 0.31 16 43 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.56 7.60 -51.93 -0.39 1.16 16 45 H 0.08 1.29 7.83 -51.93 -0.41 0.88 16 46 H 0.05 0.65 6.77 -51.93 -0.35 0.30 16 47 H 0.07 1.23 6.75 -51.93 -0.35 0.88 16 48 H 0.06 0.82 6.85 -51.93 -0.36 0.46 16 49 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.38 9.72 6.18 -40.82 -0.25 9.46 16 52 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -33.71 398.19 -10.27 -43.98 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.42 Total: 6.82 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.30 Total: -2.09 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.62 Total: -63.09 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.71 -10.27 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181947106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.755 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds