Wall clock time and date at job start Wed Apr 1 2020 04:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.30671 * 2 1 4 4 C 1.54389 * 110.34120 * 237.82374 * 2 1 3 5 5 N 1.48142 * 104.62041 * 264.89294 * 4 2 1 6 6 C 1.34768 * 127.84055 * 140.39449 * 5 4 2 7 7 O 1.21281 * 120.00597 * 180.02562 * 6 5 4 8 8 C 1.50706 * 120.00038 * 0.02562 * 6 5 4 9 9 H 1.08999 * 109.46445 * 299.99800 * 8 6 5 10 10 C 1.53147 * 109.46696 * 180.02562 * 8 6 5 11 11 C 1.53395 * 109.24600 * 170.50803 * 10 8 6 12 12 C 1.51040 * 108.21066 * 48.80449 * 11 10 8 13 13 N 1.30091 * 127.38951 * 164.02736 * 12 11 10 14 14 C 1.34289 * 109.21466 * 180.10159 * 13 12 11 15 15 C 1.34852 * 108.06926 * 359.97438 * 14 13 12 16 16 N 1.35417 * 123.98719 * 344.08196 * 12 11 10 17 17 C 1.46481 * 124.81690 * 359.84355 * 16 12 11 18 18 C 1.48148 * 104.32251 * 320.41203 * 5 4 2 19 19 C 1.54280 * 110.43132 * 122.23632 * 2 1 3 20 20 C 1.53003 * 110.34580 * 0.04358 * 19 2 1 21 21 C 1.53005 * 110.34445 * 237.78435 * 19 2 1 22 22 N 1.46497 * 109.47131 * 180.02562 * 21 19 2 23 23 C 1.36937 * 119.99740 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99996 * 359.97438 * 23 22 21 25 25 C 1.38817 * 120.00103 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99738 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00079 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47332 * 59.99809 * 27 25 23 29 29 H 1.48505 * 109.47142 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47400 * 299.99449 * 27 25 23 31 31 H 1.09001 * 109.47275 * 179.29977 * 1 2 3 32 32 H 1.09000 * 109.46451 * 299.29666 * 1 2 3 33 33 H 1.08995 * 109.47048 * 59.29464 * 1 2 3 34 34 H 1.09000 * 110.40509 * 23.67790 * 4 2 1 35 35 H 1.09001 * 110.40707 * 145.98494 * 4 2 1 36 36 H 1.08997 * 109.51128 * 290.43476 * 10 8 6 37 37 H 1.08999 * 109.51562 * 50.58047 * 10 8 6 38 38 H 1.09004 * 109.69964 * 289.13674 * 11 10 8 39 39 H 1.08994 * 109.76781 * 168.51549 * 11 10 8 40 40 H 1.07999 * 125.96578 * 179.97438 * 14 13 12 41 41 H 1.08004 * 126.65537 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.57859 * 223.09016 * 17 16 12 43 43 H 1.08995 * 109.58291 * 102.68331 * 17 16 12 44 44 H 1.08998 * 110.40441 * 158.36670 * 18 5 4 45 45 H 1.08994 * 110.41147 * 280.80433 * 18 5 4 46 46 H 1.08998 * 109.46584 * 60.00187 * 20 19 2 47 47 H 1.08995 * 109.47120 * 179.97438 * 20 19 2 48 48 H 1.08997 * 109.46741 * 300.00351 * 20 19 2 49 49 H 1.08996 * 109.46910 * 299.99985 * 21 19 2 50 50 H 1.08995 * 109.46861 * 60.00284 * 21 19 2 51 51 H 0.97004 * 120.00317 * 359.97438 * 22 21 19 52 52 H 0.97001 * 120.00293 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 2.3164 -2.1425 -0.7242 6 6 2.0806 -3.3092 -1.3561 7 8 2.3408 -4.3593 -0.8079 8 6 1.4934 -3.3092 -2.7440 9 1 0.5206 -2.8177 -2.7269 10 6 1.3270 -4.7527 -3.2278 11 6 0.5167 -4.7592 -4.5303 12 6 1.1155 -3.7339 -5.4639 13 7 0.9199 -3.6226 -6.7451 14 6 1.6336 -2.5856 -7.2127 15 6 2.2971 -2.0334 -6.1767 16 7 1.9692 -2.7591 -5.0704 17 6 2.4299 -2.5559 -3.6949 18 6 2.8836 -1.9405 0.6294 19 6 2.0686 -0.7712 1.2229 20 6 0.9100 -1.3051 2.0676 21 6 2.9710 0.1320 2.0661 22 7 3.4717 -0.6186 3.2203 23 6 4.3038 -0.0119 4.1229 24 1 4.5913 1.0198 3.9836 25 6 4.7787 -0.7232 5.2163 26 7 4.4287 -1.9806 5.3857 27 14 5.9144 0.1043 6.4471 28 1 5.2234 1.2717 7.0512 29 1 6.2765 -0.8628 7.5144 30 1 7.1458 0.5618 5.7546 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3632 0.5029 0.8963 33 1 -0.3633 0.5247 -0.8836 34 1 1.3216 -0.7866 -2.0206 35 1 2.9928 -0.3202 -1.5821 36 1 2.3083 -5.1918 -3.4075 37 1 0.8013 -5.3326 -2.4693 38 1 -0.5212 -4.5020 -4.3187 39 1 0.5646 -5.7467 -4.9893 40 1 1.6700 -2.2521 -8.2393 41 1 2.9600 -1.1816 -6.2159 42 1 2.4134 -1.4923 -3.4574 43 1 3.4444 -2.9401 -3.5889 44 1 2.7547 -2.8387 1.2333 45 1 3.9384 -1.6738 0.5636 46 1 0.3000 -1.9772 1.4640 47 1 1.3060 -1.8472 2.9263 48 1 0.2987 -0.4718 2.4138 49 1 3.8119 0.4717 1.4616 50 1 2.4007 0.9939 2.4124 51 1 3.2132 -1.5451 3.3456 52 1 4.7602 -2.4776 6.1499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181947106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:11 Heat of formation + Delta-G solvation = 19.056362 kcal Electronic energy + Delta-G solvation = -31599.360627 eV Core-core repulsion = 27599.058855 eV Total energy + Delta-G solvation = -4000.301772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.31421 -41.63736 -39.82027 -37.20657 -36.53110 -34.68220 -34.16076 -33.06976 -31.61469 -30.92777 -29.48863 -28.56398 -27.22012 -26.67785 -25.68063 -24.96848 -23.55482 -22.42505 -22.32994 -20.62726 -20.03576 -19.77401 -19.02920 -18.20865 -18.03058 -17.12639 -16.88243 -16.49122 -16.39247 -15.86668 -15.62535 -15.46116 -15.18922 -15.00954 -14.92680 -14.81073 -14.71141 -14.45405 -14.40777 -13.92790 -13.82826 -13.53818 -13.17293 -13.04229 -12.93108 -12.82622 -12.73751 -12.60860 -12.47936 -12.41413 -12.25828 -12.13787 -12.05680 -11.95442 -11.49364 -11.38030 -11.22042 -11.02844 -10.93535 -10.89394 -10.57964 -9.80028 -9.27196 -8.96714 -7.93382 -5.21420 1.11002 1.37696 1.47019 1.49599 1.55735 1.68617 1.91561 2.18356 2.56643 3.16688 3.24743 3.39113 3.40491 3.49099 3.54042 3.59448 3.80477 3.95425 4.01229 4.08665 4.20227 4.23000 4.27837 4.29182 4.31038 4.34984 4.51725 4.55806 4.59242 4.63498 4.69974 4.75255 4.77141 4.83137 4.89130 4.92668 4.95745 5.02015 5.04423 5.07008 5.11514 5.15420 5.26899 5.34812 5.39516 5.44860 5.51790 5.59866 5.86514 6.18933 6.28418 6.49388 7.00070 7.15838 7.35168 8.13122 8.34023 9.30013 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.002338 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.294952 B =11973.827276 C =12204.037266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.106 0.894 4 C 0.097 3.903 5 N -0.613 5.613 6 C 0.538 3.462 7 O -0.579 6.579 8 C -0.103 4.103 9 H 0.131 0.869 10 C -0.102 4.102 11 C -0.027 4.027 12 C 0.190 3.810 13 N -0.527 5.527 14 C -0.058 4.058 15 C -0.044 4.044 16 N -0.455 5.455 17 C 0.114 3.886 18 C 0.124 3.876 19 C -0.066 4.066 20 C -0.123 4.123 21 C 0.166 3.834 22 N -0.744 5.744 23 C -0.240 4.240 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.971 3.029 28 H -0.277 1.277 29 H -0.300 1.300 30 H -0.278 1.278 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.185 0.815 41 H 0.208 0.792 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.026 0.974 48 H 0.066 0.934 49 H 0.028 0.972 50 H 0.028 0.972 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 4.278 -24.390 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.124 0.876 4 C -0.024 4.024 5 N -0.345 5.345 6 C 0.327 3.673 7 O -0.458 6.458 8 C -0.125 4.125 9 H 0.149 0.851 10 C -0.140 4.140 11 C -0.065 4.065 12 C -0.072 4.072 13 N -0.246 5.246 14 C -0.205 4.205 15 C -0.177 4.177 16 N -0.138 5.138 17 C -0.008 4.008 18 C 0.001 3.999 19 C -0.067 4.067 20 C -0.181 4.181 21 C 0.040 3.960 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.800 3.200 28 H -0.203 1.203 29 H -0.227 1.227 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.202 0.798 41 H 0.225 0.775 42 H 0.144 0.856 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.206 0.794 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.748 3.318 -24.436 26.517 hybrid contribution 1.457 0.162 1.838 2.351 sum -8.291 3.479 -22.598 24.321 Atomic orbital electron populations 1.21898 0.93194 1.01841 1.02802 1.22150 0.97277 0.99850 0.91661 0.87633 1.22932 1.02570 0.79657 0.97249 1.49064 1.61785 1.06574 1.17096 1.20305 0.77630 0.81747 0.87612 1.90752 1.54019 1.32211 1.68799 1.21509 1.01457 0.99781 0.89716 0.85149 1.21469 1.01583 0.94054 0.96934 1.20250 0.99534 0.96213 0.90531 1.23708 0.96786 0.94890 0.91815 1.70028 1.25429 1.20930 1.08241 1.22791 1.00549 0.96363 1.00750 1.23110 1.06780 1.02322 0.85462 1.45430 1.35425 1.24421 1.08511 1.22067 0.98056 1.03489 0.77200 1.22200 0.96923 0.97815 0.82936 1.21570 0.95079 0.94572 0.95523 1.21769 0.97181 1.00715 0.98410 1.20901 0.94366 0.93275 0.87485 1.42634 1.57032 1.12755 1.26264 1.19602 1.19681 0.95967 1.01927 0.90390 1.25550 1.03398 0.96744 1.01311 1.69819 1.50775 1.09975 1.31682 0.85244 0.79072 0.77093 0.78549 1.20312 1.22656 1.20377 0.93149 0.92449 0.90231 0.87126 0.88551 0.91823 0.89212 0.87576 0.87903 0.79806 0.77503 0.85563 0.89571 0.93490 0.91745 0.92248 0.95519 0.91472 0.95423 0.95449 0.79412 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.93 71.98 0.57 -1.44 16 2 C -0.09 -1.52 3.30 -9.89 -0.03 -1.55 16 3 H 0.11 1.54 7.71 -2.39 -0.02 1.52 16 4 C 0.10 1.28 4.93 86.54 0.43 1.70 16 5 N -0.61 -13.49 3.31 -807.96 -2.67 -16.17 16 6 C 0.54 12.77 7.25 87.66 0.64 13.41 16 7 O -0.58 -19.81 16.09 -3.03 -0.05 -19.86 16 8 C -0.10 -1.54 1.87 -11.40 -0.02 -1.56 16 9 H 0.13 1.43 7.93 -2.39 -0.02 1.41 16 10 C -0.10 -1.67 4.68 30.78 0.14 -1.53 16 11 C -0.03 -0.39 6.33 30.09 0.19 -0.20 16 12 C 0.19 3.64 7.65 138.23 1.06 4.70 16 13 N -0.53 -12.13 11.24 -187.52 -2.11 -14.23 16 14 C -0.06 -1.03 11.87 83.54 0.99 -0.04 16 15 C -0.04 -0.60 11.64 83.22 0.97 0.37 16 16 N -0.45 -6.97 3.13 -513.83 -1.61 -8.58 16 17 C 0.11 1.38 5.91 86.47 0.51 1.89 16 18 C 0.12 3.81 5.71 86.54 0.49 4.31 16 19 C -0.07 -1.82 0.73 -51.27 -0.04 -1.86 16 20 C -0.12 -3.71 7.09 71.98 0.51 -3.20 16 21 C 0.17 5.90 4.87 86.38 0.42 6.32 16 22 N -0.74 -36.12 5.12 -343.46 -1.76 -37.88 16 23 C -0.24 -13.01 9.99 84.03 0.84 -12.17 16 24 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 25 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 26 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 27 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 30 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.05 0.81 6.71 -2.39 -0.02 0.80 16 32 H 0.06 0.93 6.90 -2.39 -0.02 0.92 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.77 6.15 -2.39 -0.01 0.76 16 35 H 0.10 0.96 8.13 -2.39 -0.02 0.94 16 36 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 37 H 0.09 1.60 7.79 -2.39 -0.02 1.58 16 38 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.13 0.85 5.67 -2.39 -0.01 0.84 16 43 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 44 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 45 H 0.06 2.15 7.83 -2.39 -0.02 2.13 16 46 H 0.06 1.61 6.77 -2.39 -0.02 1.60 16 47 H 0.03 1.01 6.75 -2.39 -0.02 0.99 16 48 H 0.07 1.86 6.85 -2.39 -0.02 1.84 16 49 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 50 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.37 19.82 6.18 -92.71 -0.57 19.25 16 52 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.50 398.19 2.60 -74.90 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.35 Total: 28.38 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 8.14 Total: 5.15 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -7.87 Total: -136.46 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.50 2.60 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181947106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.957 kcal (2) G-P(sol) polarization free energy of solvation -77.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds