Wall clock time and date at job start Wed Apr 1 2020 04:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09002 * 109.49653 * 299.93606 * 8 6 5 10 10 C 1.53121 * 109.49324 * 179.83950 * 8 6 5 11 11 C 1.53279 * 109.70969 * 170.14664 * 10 8 6 12 12 N 1.46478 * 108.69284 * 50.76473 * 11 10 8 13 13 C 1.34405 * 128.44225 * 162.64757 * 12 11 10 14 14 N 1.30783 * 108.55313 * 180.16849 * 13 12 11 15 15 C 1.34431 * 109.31999 * 359.94825 * 14 13 12 16 16 C 1.33856 * 107.79681 * 359.97438 * 15 14 13 17 17 C 1.50710 * 128.68141 * 180.02562 * 16 15 14 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00147 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46793 * 89.99698 * 27 25 23 29 29 H 1.48496 * 109.47174 * 209.99767 * 27 25 23 30 30 H 1.48497 * 109.46863 * 329.99889 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.08993 * 109.43310 * 290.21440 * 10 8 6 37 37 H 1.09004 * 109.43361 * 50.07549 * 10 8 6 38 38 H 1.09002 * 109.59650 * 291.00889 * 11 10 8 39 39 H 1.08997 * 109.74009 * 170.60890 * 11 10 8 40 40 H 1.07999 * 125.72320 * 0.17568 * 13 12 11 41 41 H 1.08004 * 126.10149 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.74488 * 44.61467 * 17 16 15 43 43 H 1.08999 * 109.79256 * 283.91854 * 17 16 15 44 44 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 46 46 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 47 47 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 48 48 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 49 49 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 50 50 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 51 51 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5251 -2.8205 -2.7273 10 6 1.3371 -4.7541 -3.2276 11 6 0.5231 -4.7746 -4.5262 12 7 1.1118 -3.8161 -5.4645 13 6 0.9342 -3.7315 -6.7941 14 7 1.6483 -2.7336 -7.2466 15 6 2.2995 -2.1529 -6.2239 16 6 1.9763 -2.8133 -5.1053 17 6 2.4381 -2.5575 -3.6937 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 4.5794 -2.0326 5.2806 27 14 6.0367 0.0621 6.3617 28 1 5.2419 0.6362 7.4771 29 1 6.9905 -0.9414 6.8987 30 1 6.7896 1.1461 5.6812 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.3205 -5.1876 -3.4093 37 1 0.8195 -5.3373 -2.4660 38 1 -0.5087 -4.4932 -4.3154 39 1 0.5481 -5.7739 -4.9606 40 1 0.3070 -4.3789 -7.3889 41 1 2.9647 -1.3048 -6.2926 42 1 2.3987 -1.4891 -3.4812 43 1 3.4582 -2.9204 -3.5677 44 1 3.9374 -1.6733 0.5690 45 1 2.7526 -2.8378 1.2374 46 1 1.2999 -1.8900 2.8976 47 1 0.3251 -0.4676 2.4560 48 1 0.2673 -1.9338 1.4484 49 1 3.7798 0.5157 1.4508 50 1 2.3830 0.9675 2.4574 51 1 3.2943 -1.5730 3.2889 52 1 4.9466 -2.5419 6.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181947264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:30 Heat of formation + Delta-G solvation = 38.477914 kcal Electronic energy + Delta-G solvation = -31566.057596 eV Core-core repulsion = 27566.598006 eV Total energy + Delta-G solvation = -3999.459590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.63956 -40.54490 -38.69771 -36.43797 -34.91050 -33.62750 -32.94354 -31.54809 -30.80769 -29.71531 -28.59393 -27.31886 -25.72586 -25.58731 -24.86945 -23.40818 -22.63362 -21.75238 -21.20082 -19.63554 -19.22354 -18.52397 -17.50270 -17.41291 -16.82103 -16.20641 -16.00674 -15.33389 -15.05804 -14.53152 -14.47584 -14.35340 -14.22859 -14.13217 -13.89909 -13.62875 -13.44522 -13.41567 -13.14597 -13.04078 -12.64943 -12.48419 -12.31910 -12.08496 -11.98837 -11.58356 -11.55409 -11.42126 -11.29421 -11.28256 -11.02365 -10.82590 -10.45895 -10.37544 -10.27548 -10.22397 -9.92556 -9.81636 -9.76682 -9.63239 -8.89534 -8.65472 -8.62056 -6.93614 -5.77252 -3.06267 1.76210 2.45060 2.53963 2.86171 2.91391 3.42807 3.47948 3.49834 3.93343 4.13517 4.18065 4.33727 4.46578 4.49529 4.54172 4.60040 4.71245 4.74946 4.80887 4.86302 5.01352 5.07457 5.18416 5.30350 5.33043 5.36447 5.38641 5.44329 5.47013 5.54283 5.56955 5.60697 5.69732 5.76449 5.85617 5.95338 6.01986 6.05689 6.06573 6.12341 6.18617 6.22166 6.40644 6.45796 6.54705 6.64104 6.73797 6.82415 6.91130 7.56573 7.68761 7.79442 8.10343 8.41202 9.52632 10.09688 10.43981 11.45380 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.002333 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.189891 B =11998.696041 C =12229.889104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.101 3.899 5 N -0.616 5.616 6 C 0.537 3.463 7 O -0.537 6.537 8 C -0.106 4.106 9 H 0.100 0.900 10 C -0.115 4.115 11 C 0.104 3.896 12 N -0.456 5.456 13 C 0.182 3.818 14 N -0.497 5.497 15 C -0.022 4.022 16 C -0.020 4.020 17 C -0.040 4.040 18 C 0.119 3.881 19 C -0.074 4.074 20 C -0.131 4.131 21 C 0.168 3.832 22 N -0.730 5.730 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.204 0.796 41 H 0.170 0.830 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.047 0.953 49 H 0.020 0.980 50 H 0.022 0.978 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 -1.572 -22.163 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.107 0.893 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.325 3.675 7 O -0.414 6.414 8 C -0.127 4.127 9 H 0.118 0.882 10 C -0.153 4.153 11 C -0.018 4.018 12 N -0.140 5.140 13 C -0.100 4.100 14 N -0.215 5.215 15 C -0.170 4.170 16 C -0.134 4.134 17 C -0.078 4.078 18 C -0.002 4.002 19 C -0.076 4.076 20 C -0.188 4.188 21 C 0.040 3.960 22 N -0.375 5.375 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.220 0.780 41 H 0.187 0.813 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.040 0.960 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.626 -2.006 -22.579 25.476 hybrid contribution 0.484 -0.099 1.600 1.674 sum -11.142 -2.105 -20.980 23.848 Atomic orbital electron populations 1.21910 0.94582 1.01728 1.01682 1.22147 0.96207 0.99631 0.93813 0.89281 1.22612 1.00614 0.82018 0.96941 1.48999 1.62593 1.05160 1.18191 1.19874 0.78418 0.82393 0.86792 1.90743 1.52639 1.30440 1.67577 1.21359 1.00824 0.97978 0.92564 0.88229 1.21701 1.02192 0.95923 0.95498 1.22066 0.97879 0.92605 0.89270 1.45493 1.35338 1.24788 1.08424 1.24793 1.03605 1.00365 0.81237 1.70509 1.10983 1.08604 1.31426 1.21847 1.04427 1.02983 0.87705 1.21029 1.00315 0.94685 0.97415 1.20309 0.99075 1.01600 0.86811 1.22505 0.97342 0.98982 0.81399 1.21702 0.96199 0.95155 0.94496 1.21859 0.96828 1.00725 0.99423 1.20715 0.93327 0.92831 0.89124 1.42386 1.55982 1.11018 1.28149 1.19196 1.19670 0.94647 1.03632 0.91233 1.24735 1.01052 0.95898 0.99200 1.69652 1.48528 1.07029 1.32817 0.86208 0.80461 0.78129 0.81483 1.21771 1.21807 1.20793 0.91787 0.93168 0.92556 0.90444 0.90624 0.89976 0.88182 0.89478 0.88526 0.77957 0.81316 0.88539 0.89381 0.90265 0.89658 0.91586 0.92472 0.93429 0.96184 0.95977 0.78088 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.93 37.16 0.29 -1.05 16 2 C -0.10 -1.06 3.30 -89.23 -0.29 -1.35 16 3 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 4 C 0.10 0.96 4.97 -2.41 -0.01 0.94 16 5 N -0.62 -7.71 3.31 -169.30 -0.56 -8.27 16 6 C 0.54 6.93 7.24 -10.98 -0.08 6.85 16 7 O -0.54 -9.19 16.08 5.56 0.09 -9.10 16 8 C -0.11 -0.93 1.87 -91.45 -0.17 -1.10 16 9 H 0.10 0.77 7.93 -51.93 -0.41 0.36 16 10 C -0.12 -0.91 4.66 -26.52 -0.12 -1.04 16 11 C 0.10 0.59 7.00 -3.91 -0.03 0.56 16 12 N -0.46 -3.72 3.13 -114.09 -0.36 -4.08 16 13 C 0.18 1.57 12.66 -90.72 -1.15 0.42 16 14 N -0.50 -5.68 11.27 -14.87 -0.17 -5.85 16 15 C -0.02 -0.23 11.84 -17.95 -0.21 -0.44 16 16 C -0.02 -0.19 6.57 -81.73 -0.54 -0.72 16 17 C -0.04 -0.32 5.20 -27.62 -0.14 -0.47 16 18 C 0.12 1.88 5.55 -2.40 -0.01 1.87 16 19 C -0.07 -1.09 0.73 -153.11 -0.11 -1.20 16 20 C -0.13 -1.99 7.08 37.16 0.26 -1.72 16 21 C 0.17 3.11 4.85 -4.04 -0.02 3.09 16 22 N -0.73 -17.62 5.12 -59.91 -0.31 -17.92 16 23 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 27 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.06 0.64 6.89 -51.93 -0.36 0.29 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 34 H 0.08 0.57 6.14 -51.93 -0.32 0.25 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.10 0.83 7.77 -51.93 -0.40 0.43 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.10 0.67 5.77 -51.92 -0.30 0.37 16 43 H 0.09 0.80 8.11 -51.93 -0.42 0.37 16 44 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 45 H 0.08 1.58 7.60 -51.93 -0.39 1.19 16 46 H 0.07 1.20 7.01 -51.93 -0.36 0.84 16 47 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 48 H 0.05 0.66 6.62 -51.93 -0.34 0.31 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.38 9.86 6.28 -40.82 -0.26 9.60 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -34.39 398.39 -10.62 -45.01 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.44 Total: 6.75 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.58 Total: -2.51 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.67 Total: -63.36 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.39 -10.62 -45.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181947264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.491 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds