Wall clock time and date at job start Wed Apr 1 2020 04:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09002 * 109.49653 * 299.93606 * 8 6 5 10 10 C 1.53121 * 109.49324 * 179.83950 * 8 6 5 11 11 C 1.53279 * 109.70969 * 170.14664 * 10 8 6 12 12 N 1.46478 * 108.69284 * 50.76473 * 11 10 8 13 13 C 1.34405 * 128.44225 * 162.64757 * 12 11 10 14 14 N 1.30783 * 108.55313 * 180.16849 * 13 12 11 15 15 C 1.34431 * 109.31999 * 359.94825 * 14 13 12 16 16 C 1.33856 * 107.79681 * 359.97438 * 15 14 13 17 17 C 1.50710 * 128.68141 * 180.02562 * 16 15 14 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00147 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46793 * 89.99698 * 27 25 23 29 29 H 1.48496 * 109.47174 * 209.99767 * 27 25 23 30 30 H 1.48497 * 109.46863 * 329.99889 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.08993 * 109.43310 * 290.21440 * 10 8 6 37 37 H 1.09004 * 109.43361 * 50.07549 * 10 8 6 38 38 H 1.09002 * 109.59650 * 291.00889 * 11 10 8 39 39 H 1.08997 * 109.74009 * 170.60890 * 11 10 8 40 40 H 1.07999 * 125.72320 * 0.17568 * 13 12 11 41 41 H 1.08004 * 126.10149 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.74488 * 44.61467 * 17 16 15 43 43 H 1.08999 * 109.79256 * 283.91854 * 17 16 15 44 44 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 46 46 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 47 47 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 48 48 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 49 49 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 50 50 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 51 51 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5251 -2.8205 -2.7273 10 6 1.3371 -4.7541 -3.2276 11 6 0.5231 -4.7746 -4.5262 12 7 1.1118 -3.8161 -5.4645 13 6 0.9342 -3.7315 -6.7941 14 7 1.6483 -2.7336 -7.2466 15 6 2.2995 -2.1529 -6.2239 16 6 1.9763 -2.8133 -5.1053 17 6 2.4381 -2.5575 -3.6937 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 4.5794 -2.0326 5.2806 27 14 6.0367 0.0621 6.3617 28 1 5.2419 0.6362 7.4771 29 1 6.9905 -0.9414 6.8987 30 1 6.7896 1.1461 5.6812 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.3205 -5.1876 -3.4093 37 1 0.8195 -5.3373 -2.4660 38 1 -0.5087 -4.4932 -4.3154 39 1 0.5481 -5.7739 -4.9606 40 1 0.3070 -4.3789 -7.3889 41 1 2.9647 -1.3048 -6.2926 42 1 2.3987 -1.4891 -3.4812 43 1 3.4582 -2.9204 -3.5677 44 1 3.9374 -1.6733 0.5690 45 1 2.7526 -2.8378 1.2374 46 1 1.2999 -1.8900 2.8976 47 1 0.3251 -0.4676 2.4560 48 1 0.2673 -1.9338 1.4484 49 1 3.7798 0.5157 1.4508 50 1 2.3830 0.9675 2.4574 51 1 3.2943 -1.5730 3.2889 52 1 4.9466 -2.5419 6.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181947264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:29 Heat of formation + Delta-G solvation = 17.764628 kcal Electronic energy + Delta-G solvation = -31566.955792 eV Core-core repulsion = 27566.598006 eV Total energy + Delta-G solvation = -4000.357786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.27922 -41.59354 -39.77721 -37.21262 -36.51657 -34.76504 -33.88306 -33.06009 -31.48072 -31.22346 -29.38928 -28.38505 -27.12604 -26.64025 -25.66954 -24.96497 -23.52205 -22.43764 -22.33189 -20.45739 -20.06625 -19.80447 -18.99210 -18.18474 -17.92767 -17.20663 -16.92180 -16.49476 -16.22674 -15.84139 -15.63769 -15.44212 -15.00433 -14.92250 -14.90818 -14.72363 -14.63188 -14.45521 -14.27477 -14.04054 -13.87366 -13.55183 -13.16267 -13.03747 -12.98782 -12.88038 -12.81485 -12.58165 -12.46806 -12.39660 -12.19322 -12.11992 -12.03345 -11.95375 -11.47447 -11.36650 -11.19651 -11.05379 -10.92664 -10.75307 -10.42699 -9.74897 -9.28224 -8.97037 -7.93664 -5.21793 1.13686 1.46814 1.48364 1.52500 1.56717 1.83963 1.93464 2.22588 2.56403 3.17662 3.39988 3.45803 3.53360 3.56287 3.60406 3.74211 3.83003 3.94514 4.01013 4.13016 4.19939 4.25065 4.28400 4.29969 4.35532 4.45977 4.50368 4.55336 4.61164 4.67684 4.71268 4.75249 4.78209 4.84125 4.85324 4.90852 4.93143 5.03462 5.04774 5.08221 5.10818 5.15667 5.27625 5.39492 5.43022 5.45762 5.52026 5.60937 5.80545 6.28214 6.34423 6.56608 7.07212 7.15014 7.34800 8.12464 8.33755 9.30011 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.002333 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.189891 B =11998.696041 C =12229.889104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.104 0.896 4 C 0.100 3.900 5 N -0.613 5.613 6 C 0.533 3.467 7 O -0.588 6.588 8 C -0.093 4.093 9 H 0.124 0.876 10 C -0.114 4.114 11 C 0.109 3.891 12 N -0.457 5.457 13 C 0.186 3.814 14 N -0.539 5.539 15 C -0.042 4.042 16 C -0.025 4.025 17 C -0.032 4.032 18 C 0.125 3.875 19 C -0.066 4.066 20 C -0.122 4.122 21 C 0.166 3.834 22 N -0.743 5.743 23 C -0.239 4.239 24 H 0.078 0.922 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.972 3.028 28 H -0.288 1.288 29 H -0.300 1.300 30 H -0.267 1.267 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.237 0.763 41 H 0.177 0.823 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.028 0.972 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 0.187 -24.558 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.122 0.878 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.323 3.677 7 O -0.469 6.469 8 C -0.114 4.114 9 H 0.142 0.858 10 C -0.152 4.152 11 C -0.012 4.012 12 N -0.140 5.140 13 C -0.096 4.096 14 N -0.258 5.258 15 C -0.189 4.189 16 C -0.139 4.139 17 C -0.070 4.070 18 C 0.001 3.999 19 C -0.067 4.067 20 C -0.179 4.179 21 C 0.040 3.960 22 N -0.386 5.386 23 C -0.370 4.370 24 H 0.096 0.904 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.801 3.199 28 H -0.215 1.215 29 H -0.226 1.226 30 H -0.192 1.192 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.253 0.747 41 H 0.194 0.806 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.045 0.955 50 H 0.046 0.954 51 H 0.205 0.795 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.386 -0.179 -25.016 28.373 hybrid contribution 1.014 -0.652 2.301 2.597 sum -12.372 -0.831 -22.715 25.879 Atomic orbital electron populations 1.21888 0.93055 1.01817 1.02817 1.22162 0.97392 0.99784 0.91702 0.87791 1.22881 1.02439 0.79644 0.97130 1.49046 1.61893 1.06721 1.16807 1.20697 0.77496 0.81526 0.88003 1.90722 1.54742 1.32342 1.69066 1.21340 1.01513 0.99053 0.89473 0.85844 1.21660 1.01671 0.95157 0.96748 1.22213 0.98120 0.93401 0.87497 1.45661 1.35010 1.24677 1.08698 1.25437 1.02851 0.99771 0.81555 1.70486 1.12516 1.10248 1.32509 1.22107 1.04981 1.03746 0.88018 1.21060 1.00639 0.94954 0.97293 1.20263 0.98103 1.02458 0.86202 1.22159 0.96826 0.97716 0.83165 1.21569 0.95082 0.94531 0.95551 1.21769 0.97111 1.00679 0.98385 1.20911 0.93968 0.93127 0.88042 1.42622 1.55838 1.10915 1.29267 1.19644 1.18874 0.94963 1.03566 0.90370 1.25557 1.03423 0.96543 1.01553 1.69828 1.50360 1.08598 1.33530 0.85162 0.78382 0.77190 0.79176 1.21474 1.22649 1.19224 0.92393 0.90220 0.93115 0.86974 0.89096 0.91897 0.88670 0.87142 0.86289 0.74742 0.80579 0.86731 0.90668 0.92222 0.93656 0.95655 0.91487 0.92028 0.95539 0.95404 0.79484 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.93 71.98 0.57 -1.54 16 2 C -0.09 -1.68 3.30 -9.89 -0.03 -1.72 16 3 H 0.10 1.70 7.71 -2.38 -0.02 1.69 16 4 C 0.10 1.57 4.97 86.53 0.43 2.00 16 5 N -0.61 -14.84 3.31 -807.94 -2.67 -17.51 16 6 C 0.53 13.53 7.24 87.66 0.64 14.16 16 7 O -0.59 -20.98 16.08 -3.02 -0.05 -21.03 16 8 C -0.09 -1.43 1.87 -11.33 -0.02 -1.45 16 9 H 0.12 1.39 7.93 -2.39 -0.02 1.37 16 10 C -0.11 -1.64 4.66 30.73 0.14 -1.49 16 11 C 0.11 0.88 7.00 86.48 0.61 1.49 16 12 N -0.46 -6.13 3.13 -514.86 -1.61 -7.74 16 13 C 0.19 2.70 12.66 180.38 2.28 4.99 16 14 N -0.54 -11.40 11.27 -200.97 -2.26 -13.67 16 15 C -0.04 -0.79 11.84 83.30 0.99 0.19 16 16 C -0.02 -0.40 6.57 40.73 0.27 -0.13 16 17 C -0.03 -0.45 5.20 30.02 0.16 -0.30 16 18 C 0.12 4.08 5.55 86.54 0.48 4.56 16 19 C -0.07 -1.91 0.73 -51.27 -0.04 -1.95 16 20 C -0.12 -3.75 7.08 71.98 0.51 -3.24 16 21 C 0.17 6.11 4.85 86.38 0.42 6.53 16 22 N -0.74 -36.90 5.12 -343.45 -1.76 -38.66 16 23 C -0.24 -13.15 9.99 84.03 0.84 -12.31 16 24 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 26 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 27 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 31 H 0.06 0.98 6.89 -2.39 -0.02 0.96 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.84 6.72 -2.39 -0.02 0.83 16 34 H 0.11 1.05 6.14 -2.39 -0.01 1.04 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 37 H 0.09 1.49 7.77 -2.38 -0.02 1.47 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.24 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.11 1.18 5.77 -2.38 -0.01 1.16 16 43 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 44 H 0.06 2.15 7.86 -2.39 -0.02 2.14 16 45 H 0.04 1.83 7.60 -2.39 -0.02 1.81 16 46 H 0.02 0.96 7.01 -2.38 -0.02 0.94 16 47 H 0.07 1.89 6.98 -2.39 -0.02 1.87 16 48 H 0.06 1.69 6.62 -2.39 -0.02 1.67 16 49 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.37 20.20 6.28 -92.71 -0.58 19.61 16 52 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -79.26 398.39 3.00 -76.26 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.34 Total: 28.49 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 8.70 Total: 5.71 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -8.03 Total: -137.88 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -79.26 3.00 -76.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181947264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.027 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds