Wall clock time and date at job start Wed Apr 1 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09002 * 109.42920 * 300.09492 * 8 6 5 10 10 C 1.53121 * 109.42924 * 180.24831 * 8 6 5 11 11 C 1.53497 * 109.30153 * 170.00900 * 10 8 6 12 12 C 1.50718 * 108.04785 * 48.74029 * 11 10 8 13 13 C 1.33862 * 128.68015 * 164.14768 * 12 11 10 14 14 N 1.34421 * 107.79787 * 180.11944 * 13 12 11 15 15 C 1.30795 * 109.31982 * 359.97438 * 14 13 12 16 16 N 1.34407 * 108.55264 * 359.95954 * 15 14 13 17 17 C 1.46469 * 128.44163 * 180.10331 * 16 15 14 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00147 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47143 * 59.99746 * 27 25 23 29 29 H 1.48495 * 109.47059 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47041 * 299.99715 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.09001 * 109.49679 * 289.97344 * 10 8 6 37 37 H 1.09005 * 109.49421 * 50.07148 * 10 8 6 38 38 H 1.09006 * 109.77636 * 289.09395 * 11 10 8 39 39 H 1.08998 * 109.72725 * 168.36061 * 11 10 8 40 40 H 1.08001 * 126.10004 * 0.08916 * 13 12 11 41 41 H 1.08002 * 125.71860 * 179.97438 * 15 14 13 42 42 H 1.09006 * 109.59666 * 42.96063 * 17 16 15 43 43 H 1.08996 * 109.73626 * 282.56346 * 17 16 15 44 44 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 46 46 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 47 47 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 48 48 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 49 49 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 50 50 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 51 51 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5265 -2.8178 -2.7266 10 6 1.3283 -4.7549 -3.2221 11 6 0.5093 -4.7647 -4.5203 12 6 1.1029 -3.7419 -5.4547 13 6 0.9129 -3.6025 -6.7724 14 7 1.6478 -2.5554 -7.1850 15 6 2.2848 -2.0443 -6.1633 16 7 1.9716 -2.7539 -5.0657 17 6 2.4368 -2.5573 -3.6908 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 4.5794 -2.0326 5.2806 27 14 6.0367 0.0621 6.3617 28 1 5.3313 1.1912 7.0197 29 1 6.4562 -0.9248 7.3889 30 1 7.2342 0.5747 5.6488 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.3083 -5.1949 -3.4066 37 1 0.8072 -5.3330 -2.4589 38 1 -0.5278 -4.5078 -4.3041 39 1 0.5569 -5.7529 -4.9779 40 1 0.2819 -4.2213 -7.3933 41 1 2.9505 -1.1945 -6.1963 42 1 2.4252 -1.4943 -3.4494 43 1 3.4501 -2.9449 -3.5861 44 1 3.9374 -1.6733 0.5690 45 1 2.7526 -2.8378 1.2374 46 1 1.2999 -1.8900 2.8976 47 1 0.3251 -0.4676 2.4560 48 1 0.2673 -1.9338 1.4484 49 1 3.7798 0.5157 1.4508 50 1 2.3830 0.9675 2.4574 51 1 3.2943 -1.5730 3.2889 52 1 4.9466 -2.5419 6.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181951713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:43 Heat of formation + Delta-G solvation = 39.201567 kcal Electronic energy + Delta-G solvation = -31613.438574 eV Core-core repulsion = 27614.010364 eV Total energy + Delta-G solvation = -3999.428210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.65541 -40.63736 -38.77479 -36.44826 -34.95503 -33.50677 -33.11406 -31.62864 -31.09710 -29.68664 -28.32102 -27.45120 -25.83987 -25.66408 -24.88622 -23.40854 -22.62483 -21.70566 -21.28406 -19.78393 -19.24479 -18.58401 -17.55981 -17.42409 -16.92929 -16.09485 -16.04489 -15.40048 -15.13747 -14.60402 -14.47455 -14.39818 -14.25050 -14.16756 -14.10111 -13.69777 -13.54676 -13.39312 -13.15795 -13.08043 -12.69404 -12.46626 -12.34317 -12.13965 -11.93357 -11.62245 -11.57106 -11.39076 -11.34216 -11.31667 -11.05830 -10.83523 -10.52416 -10.43844 -10.28185 -10.25037 -9.98922 -9.89806 -9.82165 -9.66617 -8.92197 -8.76119 -8.61513 -6.96916 -5.79790 -3.09138 1.76440 2.25346 2.51518 2.78759 2.90700 3.41224 3.45820 3.47080 3.90886 4.03179 4.12463 4.35539 4.41894 4.48414 4.48609 4.60419 4.68189 4.73960 4.78363 4.81056 4.96553 5.05232 5.17783 5.18118 5.24571 5.31022 5.38082 5.42221 5.44440 5.49813 5.56250 5.67148 5.68384 5.78766 5.80739 5.89489 5.94016 6.00882 6.06777 6.06915 6.12740 6.16565 6.36063 6.45598 6.48650 6.59293 6.69207 6.77777 6.89410 7.44407 7.65515 7.79411 7.98500 8.38552 9.49935 10.06515 10.40786 11.42697 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.002354 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.157439 B =11893.047709 C =12119.940823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.099 3.901 5 N -0.618 5.618 6 C 0.538 3.462 7 O -0.528 6.528 8 C -0.114 4.114 9 H 0.106 0.894 10 C -0.106 4.106 11 C -0.046 4.046 12 C -0.024 4.024 13 C -0.026 4.026 14 N -0.496 5.496 15 C 0.184 3.816 16 N -0.454 5.454 17 C 0.110 3.890 18 C 0.119 3.881 19 C -0.074 4.074 20 C -0.132 4.132 21 C 0.168 3.832 22 N -0.730 5.730 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.205 0.795 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.020 0.980 50 H 0.023 0.977 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 0.064 -21.292 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.024 4.024 5 N -0.352 5.352 6 C 0.325 3.675 7 O -0.403 6.403 8 C -0.136 4.136 9 H 0.124 0.876 10 C -0.144 4.144 11 C -0.084 4.084 12 C -0.138 4.138 13 C -0.173 4.173 14 N -0.214 5.214 15 C -0.098 4.098 16 N -0.138 5.138 17 C -0.013 4.013 18 C -0.002 4.002 19 C -0.075 4.075 20 C -0.189 4.189 21 C 0.040 3.960 22 N -0.375 5.375 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.186 0.814 41 H 0.221 0.779 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.041 0.959 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.997 -0.173 -21.627 23.826 hybrid contribution 0.678 0.111 1.636 1.774 sum -9.318 -0.062 -19.991 22.056 Atomic orbital electron populations 1.21917 0.94466 1.01817 1.01766 1.22137 0.96292 0.99607 0.93653 0.89218 1.22632 1.00469 0.82163 0.97175 1.49065 1.62638 1.05047 1.18421 1.19700 0.78562 0.82531 0.86687 1.90764 1.51892 1.30334 1.67347 1.21562 1.00440 0.99454 0.92151 0.87612 1.21520 1.02051 0.93751 0.97077 1.20275 0.98871 0.96599 0.92687 1.21229 1.00218 0.96035 0.96305 1.21833 1.04115 0.99267 0.92062 1.70511 1.11119 1.10714 1.29097 1.24829 1.03648 1.00508 0.80772 1.45380 1.35246 1.24523 1.08637 1.22019 0.98796 1.02249 0.78201 1.22531 0.97347 0.99123 0.81220 1.21708 0.96245 0.95110 0.94484 1.21864 0.96796 1.00773 0.99449 1.20711 0.93293 0.92834 0.89139 1.42374 1.55986 1.11011 1.28153 1.19144 1.19825 0.94641 1.03736 0.91290 1.24736 1.00992 0.95900 0.99166 1.69639 1.48410 1.07034 1.32908 0.86281 0.80789 0.78132 0.81036 1.21296 1.21703 1.21293 0.91671 0.93174 0.92481 0.90633 0.90639 0.90638 0.89157 0.89803 0.88952 0.81407 0.77856 0.88126 0.89044 0.90168 0.89507 0.91520 0.92420 0.93385 0.96236 0.95948 0.78076 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.93 37.16 0.29 -1.01 16 2 C -0.10 -1.00 3.30 -89.23 -0.29 -1.29 16 3 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 4 C 0.10 0.86 4.92 -2.41 -0.01 0.85 16 5 N -0.62 -7.33 3.31 -169.30 -0.56 -7.89 16 6 C 0.54 6.69 7.25 -10.98 -0.08 6.61 16 7 O -0.53 -8.85 16.08 5.56 0.09 -8.76 16 8 C -0.11 -0.99 1.85 -91.58 -0.17 -1.16 16 9 H 0.11 0.81 7.92 -51.93 -0.41 0.40 16 10 C -0.11 -0.91 4.69 -26.41 -0.12 -1.04 16 11 C -0.05 -0.32 6.31 -27.62 -0.17 -0.50 16 12 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 13 C -0.03 -0.26 11.84 -17.95 -0.21 -0.47 16 14 N -0.50 -5.72 11.27 -14.87 -0.17 -5.89 16 15 C 0.18 1.68 12.66 -90.70 -1.15 0.53 16 16 N -0.45 -3.94 3.13 -114.10 -0.36 -4.29 16 17 C 0.11 0.82 5.93 -3.93 -0.02 0.80 16 18 C 0.12 1.81 5.55 -2.40 -0.01 1.80 16 19 C -0.07 -1.05 0.73 -153.11 -0.11 -1.16 16 20 C -0.13 -1.95 7.08 37.16 0.26 -1.69 16 21 C 0.17 3.05 4.85 -4.04 -0.02 3.03 16 22 N -0.73 -17.36 5.12 -59.91 -0.31 -17.67 16 23 C -0.24 -6.53 9.99 -15.06 -0.15 -6.69 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 27 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.06 0.63 6.89 -51.93 -0.36 0.28 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 34 H 0.08 0.50 6.15 -51.93 -0.32 0.18 16 35 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 36 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.09 0.84 7.77 -51.93 -0.40 0.44 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.10 0.57 5.65 -51.93 -0.29 0.28 16 43 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.08 1.32 7.86 -51.93 -0.41 0.91 16 45 H 0.09 1.56 7.60 -51.93 -0.39 1.17 16 46 H 0.07 1.19 7.01 -51.93 -0.36 0.83 16 47 H 0.06 0.81 6.98 -51.93 -0.36 0.45 16 48 H 0.05 0.65 6.62 -51.93 -0.34 0.30 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.38 9.72 6.28 -40.82 -0.26 9.47 16 52 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -33.74 398.27 -10.64 -44.38 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.43 Total: 6.65 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.61 Total: -2.56 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.67 Total: -62.74 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.74 -10.64 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181951713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.581 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds